Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03040

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03039 and MPMX20_03040 overlap by 4 nucleotidesMPMX20_03040 and MPMX20_03041 overlap by 1 nucleotidesMPMX20_03041 and MPMX20_03042 are separated by 22 nucleotides MPMX20_03039: MPMX20_03039 - hypothetical protein, at 3,176,783 to 3,178,000 _03039 MPMX20_03040: MPMX20_03040 - Serine acetyltransferase, at 3,177,997 to 3,178,488 _03040 MPMX20_03041: MPMX20_03041 - hypothetical protein, at 3,178,488 to 3,179,330 _03041 MPMX20_03042: MPMX20_03042 - Tyrosine-protein kinase wzc, at 3,179,353 to 3,181,515 _03042 Position (kb) 3177 3178 3179Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3177.125 kb on - strand, within MPMX20_03039at 3177.139 kb on + strand, within MPMX20_03039at 3177.139 kb on + strand, within MPMX20_03039at 3177.209 kb on - strand, within MPMX20_03039at 3177.226 kb on + strand, within MPMX20_03039at 3177.229 kb on - strand, within MPMX20_03039at 3177.239 kb on - strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.369 kb on + strand, within MPMX20_03039at 3177.377 kb on - strand, within MPMX20_03039at 3177.377 kb on - strand, within MPMX20_03039at 3177.377 kb on - strand, within MPMX20_03039at 3177.381 kb on + strand, within MPMX20_03039at 3177.406 kb on + strand, within MPMX20_03039at 3177.406 kb on + strand, within MPMX20_03039at 3177.429 kb on - strand, within MPMX20_03039at 3177.517 kb on + strand, within MPMX20_03039at 3177.525 kb on - strand, within MPMX20_03039at 3177.525 kb on - strand, within MPMX20_03039at 3177.582 kb on + strand, within MPMX20_03039at 3177.667 kb on + strand, within MPMX20_03039at 3177.686 kb on + strand, within MPMX20_03039at 3177.694 kb on - strand, within MPMX20_03039at 3177.767 kb on - strand, within MPMX20_03039at 3177.774 kb on + strand, within MPMX20_03039at 3177.774 kb on + strand, within MPMX20_03039at 3177.788 kb on + strand, within MPMX20_03039at 3177.931 kb on + strandat 3177.931 kb on + strandat 3177.939 kb on - strandat 3177.939 kb on - strandat 3177.939 kb on - strandat 3177.951 kb on - strandat 3178.028 kb on + strandat 3178.036 kb on - strandat 3178.057 kb on + strand, within MPMX20_03040at 3178.057 kb on + strand, within MPMX20_03040at 3178.065 kb on - strand, within MPMX20_03040at 3178.076 kb on - strand, within MPMX20_03040at 3178.108 kb on - strand, within MPMX20_03040at 3178.127 kb on + strand, within MPMX20_03040at 3178.133 kb on - strand, within MPMX20_03040at 3178.145 kb on - strand, within MPMX20_03040at 3178.168 kb on - strand, within MPMX20_03040at 3178.173 kb on - strand, within MPMX20_03040at 3178.173 kb on - strand, within MPMX20_03040at 3178.178 kb on + strand, within MPMX20_03040at 3178.264 kb on - strand, within MPMX20_03040at 3178.264 kb on - strand, within MPMX20_03040at 3178.269 kb on - strand, within MPMX20_03040at 3178.342 kb on + strand, within MPMX20_03040at 3178.372 kb on - strand, within MPMX20_03040at 3178.426 kb on + strand, within MPMX20_03040at 3178.446 kb on + strandat 3178.452 kb on + strandat 3178.452 kb on + strandat 3178.452 kb on + strandat 3178.452 kb on + strandat 3178.462 kb on - strandat 3178.510 kb on + strandat 3178.550 kb on + strandat 3178.578 kb on + strand, within MPMX20_03041at 3178.755 kb on + strand, within MPMX20_03041at 3178.788 kb on - strand, within MPMX20_03041at 3178.803 kb on - strand, within MPMX20_03041at 3178.803 kb on - strand, within MPMX20_03041at 3178.807 kb on + strand, within MPMX20_03041at 3178.823 kb on + strand, within MPMX20_03041at 3178.831 kb on - strand, within MPMX20_03041at 3178.843 kb on + strand, within MPMX20_03041at 3178.856 kb on - strand, within MPMX20_03041at 3178.999 kb on - strand, within MPMX20_03041at 3179.058 kb on + strand, within MPMX20_03041at 3179.059 kb on + strand, within MPMX20_03041at 3179.071 kb on + strand, within MPMX20_03041at 3179.071 kb on + strand, within MPMX20_03041at 3179.071 kb on + strand, within MPMX20_03041at 3179.079 kb on - strand, within MPMX20_03041at 3179.079 kb on - strand, within MPMX20_03041at 3179.094 kb on + strand, within MPMX20_03041at 3179.102 kb on - strand, within MPMX20_03041at 3179.102 kb on - strand, within MPMX20_03041at 3179.132 kb on - strand, within MPMX20_03041at 3179.200 kb on - strand, within MPMX20_03041at 3179.202 kb on + strand, within MPMX20_03041at 3179.202 kb on + strand, within MPMX20_03041at 3179.204 kb on + strand, within MPMX20_03041at 3179.230 kb on + strand, within MPMX20_03041at 3179.316 kb on + strandat 3179.326 kb on + strandat 3179.326 kb on + strandat 3179.326 kb on + strandat 3179.334 kb on - strandat 3179.334 kb on - strandat 3179.334 kb on - strandat 3179.334 kb on - strandat 3179.348 kb on + strandat 3179.360 kb on + strandat 3179.360 kb on - strandat 3179.433 kb on + strandat 3179.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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3,177,125 - MPMX20_03039 0.28 -0.2
3,177,139 + MPMX20_03039 0.29 -0.4
3,177,139 + MPMX20_03039 0.29 -1.9
3,177,209 - MPMX20_03039 0.35 -1.2
3,177,226 + MPMX20_03039 0.36 +0.3
3,177,229 - MPMX20_03039 0.37 -1.0
3,177,239 - MPMX20_03039 0.37 +0.4
3,177,369 + MPMX20_03039 0.48 +0.9
3,177,369 + MPMX20_03039 0.48 -1.1
3,177,369 + MPMX20_03039 0.48 -0.4
3,177,369 + MPMX20_03039 0.48 +0.4
3,177,369 + MPMX20_03039 0.48 -0.4
3,177,369 + MPMX20_03039 0.48 +0.9
3,177,369 + MPMX20_03039 0.48 +2.6
3,177,369 + MPMX20_03039 0.48 +0.8
3,177,377 - MPMX20_03039 0.49 +1.0
3,177,377 - MPMX20_03039 0.49 +2.6
3,177,377 - MPMX20_03039 0.49 -0.2
3,177,381 + MPMX20_03039 0.49 +0.1
3,177,406 + MPMX20_03039 0.51 -0.7
3,177,406 + MPMX20_03039 0.51 +0.6
3,177,429 - MPMX20_03039 0.53 +0.0
3,177,517 + MPMX20_03039 0.60 -1.1
3,177,525 - MPMX20_03039 0.61 +0.2
3,177,525 - MPMX20_03039 0.61 -1.3
3,177,582 + MPMX20_03039 0.66 -0.7
3,177,667 + MPMX20_03039 0.73 -0.3
3,177,686 + MPMX20_03039 0.74 +0.0
3,177,694 - MPMX20_03039 0.75 +1.0
3,177,767 - MPMX20_03039 0.81 -1.0
3,177,774 + MPMX20_03039 0.81 +0.2
3,177,774 + MPMX20_03039 0.81 -1.0
3,177,788 + MPMX20_03039 0.83 -0.9
3,177,931 + -0.2
3,177,931 + +1.6
3,177,939 - -0.2
3,177,939 - +2.6
3,177,939 - +0.4
3,177,951 - +3.2
3,178,028 + -0.3
3,178,036 - +1.6
3,178,057 + MPMX20_03040 0.12 +1.0
3,178,057 + MPMX20_03040 0.12 +4.7
3,178,065 - MPMX20_03040 0.14 -0.2
3,178,076 - MPMX20_03040 0.16 -0.4
3,178,108 - MPMX20_03040 0.23 +1.0
3,178,127 + MPMX20_03040 0.26 +0.3
3,178,133 - MPMX20_03040 0.28 -1.9
3,178,145 - MPMX20_03040 0.30 +1.1
3,178,168 - MPMX20_03040 0.35 +0.6
3,178,173 - MPMX20_03040 0.36 -0.8
3,178,173 - MPMX20_03040 0.36 +0.6
3,178,178 + MPMX20_03040 0.37 -0.2
3,178,264 - MPMX20_03040 0.54 +0.3
3,178,264 - MPMX20_03040 0.54 -0.1
3,178,269 - MPMX20_03040 0.55 -0.5
3,178,342 + MPMX20_03040 0.70 -0.2
3,178,372 - MPMX20_03040 0.76 -2.0
3,178,426 + MPMX20_03040 0.87 +1.3
3,178,446 + +1.6
3,178,452 + +0.9
3,178,452 + +0.4
3,178,452 + +0.0
3,178,452 + +2.0
3,178,462 - +0.3
3,178,510 + +2.6
3,178,550 + -0.6
3,178,578 + MPMX20_03041 0.11 -0.3
3,178,755 + MPMX20_03041 0.32 -0.2
3,178,788 - MPMX20_03041 0.36 -0.2
3,178,803 - MPMX20_03041 0.37 -0.8
3,178,803 - MPMX20_03041 0.37 +0.0
3,178,807 + MPMX20_03041 0.38 -0.4
3,178,823 + MPMX20_03041 0.40 -0.2
3,178,831 - MPMX20_03041 0.41 -1.2
3,178,843 + MPMX20_03041 0.42 +0.2
3,178,856 - MPMX20_03041 0.44 -1.3
3,178,999 - MPMX20_03041 0.61 -0.1
3,179,058 + MPMX20_03041 0.68 -1.6
3,179,059 + MPMX20_03041 0.68 -1.3
3,179,071 + MPMX20_03041 0.69 +1.6
3,179,071 + MPMX20_03041 0.69 -1.9
3,179,071 + MPMX20_03041 0.69 -1.8
3,179,079 - MPMX20_03041 0.70 +1.0
3,179,079 - MPMX20_03041 0.70 -0.6
3,179,094 + MPMX20_03041 0.72 +0.0
3,179,102 - MPMX20_03041 0.73 +0.3
3,179,102 - MPMX20_03041 0.73 -0.2
3,179,132 - MPMX20_03041 0.76 -0.4
3,179,200 - MPMX20_03041 0.84 -0.4
3,179,202 + MPMX20_03041 0.85 +2.0
3,179,202 + MPMX20_03041 0.85 -0.2
3,179,204 + MPMX20_03041 0.85 +1.3
3,179,230 + MPMX20_03041 0.88 +1.2
3,179,316 + +1.0
3,179,326 + +0.5
3,179,326 + +0.5
3,179,326 + -0.1
3,179,334 - +1.6
3,179,334 - -0.4
3,179,334 - -1.3
3,179,334 - +0.7
3,179,348 + -1.2
3,179,360 + -0.5
3,179,360 - +1.2
3,179,433 + -0.5
3,179,481 - -0.9

Or see this region's nucleotide sequence