Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03039 and MPMX20_03040 overlap by 4 nucleotides MPMX20_03040 and MPMX20_03041 overlap by 1 nucleotides MPMX20_03041 and MPMX20_03042 are separated by 22 nucleotides
MPMX20_03039: MPMX20_03039 - hypothetical protein, at 3,176,783 to 3,178,000
_03039
MPMX20_03040: MPMX20_03040 - Serine acetyltransferase, at 3,177,997 to 3,178,488
_03040
MPMX20_03041: MPMX20_03041 - hypothetical protein, at 3,178,488 to 3,179,330
_03041
MPMX20_03042: MPMX20_03042 - Tyrosine-protein kinase wzc, at 3,179,353 to 3,181,515
_03042
Position (kb)
3177
3178
3179 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3177.125 kb on - strand, within MPMX20_03039 at 3177.139 kb on + strand, within MPMX20_03039 at 3177.139 kb on + strand, within MPMX20_03039 at 3177.209 kb on - strand, within MPMX20_03039 at 3177.226 kb on + strand, within MPMX20_03039 at 3177.229 kb on - strand, within MPMX20_03039 at 3177.239 kb on - strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.369 kb on + strand, within MPMX20_03039 at 3177.377 kb on - strand, within MPMX20_03039 at 3177.377 kb on - strand, within MPMX20_03039 at 3177.377 kb on - strand, within MPMX20_03039 at 3177.381 kb on + strand, within MPMX20_03039 at 3177.406 kb on + strand, within MPMX20_03039 at 3177.406 kb on + strand, within MPMX20_03039 at 3177.429 kb on - strand, within MPMX20_03039 at 3177.517 kb on + strand, within MPMX20_03039 at 3177.525 kb on - strand, within MPMX20_03039 at 3177.525 kb on - strand, within MPMX20_03039 at 3177.582 kb on + strand, within MPMX20_03039 at 3177.667 kb on + strand, within MPMX20_03039 at 3177.686 kb on + strand, within MPMX20_03039 at 3177.694 kb on - strand, within MPMX20_03039 at 3177.767 kb on - strand, within MPMX20_03039 at 3177.774 kb on + strand, within MPMX20_03039 at 3177.774 kb on + strand, within MPMX20_03039 at 3177.788 kb on + strand, within MPMX20_03039 at 3177.931 kb on + strand at 3177.931 kb on + strand at 3177.939 kb on - strand at 3177.939 kb on - strand at 3177.939 kb on - strand at 3177.951 kb on - strand at 3178.028 kb on + strand at 3178.036 kb on - strand at 3178.057 kb on + strand, within MPMX20_03040 at 3178.057 kb on + strand, within MPMX20_03040 at 3178.065 kb on - strand, within MPMX20_03040 at 3178.076 kb on - strand, within MPMX20_03040 at 3178.108 kb on - strand, within MPMX20_03040 at 3178.127 kb on + strand, within MPMX20_03040 at 3178.133 kb on - strand, within MPMX20_03040 at 3178.145 kb on - strand, within MPMX20_03040 at 3178.168 kb on - strand, within MPMX20_03040 at 3178.173 kb on - strand, within MPMX20_03040 at 3178.173 kb on - strand, within MPMX20_03040 at 3178.178 kb on + strand, within MPMX20_03040 at 3178.264 kb on - strand, within MPMX20_03040 at 3178.264 kb on - strand, within MPMX20_03040 at 3178.269 kb on - strand, within MPMX20_03040 at 3178.342 kb on + strand, within MPMX20_03040 at 3178.372 kb on - strand, within MPMX20_03040 at 3178.426 kb on + strand, within MPMX20_03040 at 3178.446 kb on + strand at 3178.452 kb on + strand at 3178.452 kb on + strand at 3178.452 kb on + strand at 3178.452 kb on + strand at 3178.462 kb on - strand at 3178.510 kb on + strand at 3178.550 kb on + strand at 3178.578 kb on + strand, within MPMX20_03041 at 3178.755 kb on + strand, within MPMX20_03041 at 3178.788 kb on - strand, within MPMX20_03041 at 3178.803 kb on - strand, within MPMX20_03041 at 3178.803 kb on - strand, within MPMX20_03041 at 3178.807 kb on + strand, within MPMX20_03041 at 3178.823 kb on + strand, within MPMX20_03041 at 3178.831 kb on - strand, within MPMX20_03041 at 3178.843 kb on + strand, within MPMX20_03041 at 3178.856 kb on - strand, within MPMX20_03041 at 3178.999 kb on - strand, within MPMX20_03041 at 3179.058 kb on + strand, within MPMX20_03041 at 3179.059 kb on + strand, within MPMX20_03041 at 3179.071 kb on + strand, within MPMX20_03041 at 3179.071 kb on + strand, within MPMX20_03041 at 3179.071 kb on + strand, within MPMX20_03041 at 3179.079 kb on - strand, within MPMX20_03041 at 3179.079 kb on - strand, within MPMX20_03041 at 3179.094 kb on + strand, within MPMX20_03041 at 3179.102 kb on - strand, within MPMX20_03041 at 3179.102 kb on - strand, within MPMX20_03041 at 3179.132 kb on - strand, within MPMX20_03041 at 3179.200 kb on - strand, within MPMX20_03041 at 3179.202 kb on + strand, within MPMX20_03041 at 3179.202 kb on + strand, within MPMX20_03041 at 3179.204 kb on + strand, within MPMX20_03041 at 3179.230 kb on + strand, within MPMX20_03041 at 3179.316 kb on + strand at 3179.326 kb on + strand at 3179.326 kb on + strand at 3179.326 kb on + strand at 3179.334 kb on - strand at 3179.334 kb on - strand at 3179.334 kb on - strand at 3179.334 kb on - strand at 3179.348 kb on + strand at 3179.360 kb on + strand at 3179.360 kb on - strand at 3179.433 kb on + strand at 3179.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 3,177,125 - MPMX20_03039 0.28 -0.2 3,177,139 + MPMX20_03039 0.29 -0.4 3,177,139 + MPMX20_03039 0.29 -1.9 3,177,209 - MPMX20_03039 0.35 -1.2 3,177,226 + MPMX20_03039 0.36 +0.3 3,177,229 - MPMX20_03039 0.37 -1.0 3,177,239 - MPMX20_03039 0.37 +0.4 3,177,369 + MPMX20_03039 0.48 +0.9 3,177,369 + MPMX20_03039 0.48 -1.1 3,177,369 + MPMX20_03039 0.48 -0.4 3,177,369 + MPMX20_03039 0.48 +0.4 3,177,369 + MPMX20_03039 0.48 -0.4 3,177,369 + MPMX20_03039 0.48 +0.9 3,177,369 + MPMX20_03039 0.48 +2.6 3,177,369 + MPMX20_03039 0.48 +0.8 3,177,377 - MPMX20_03039 0.49 +1.0 3,177,377 - MPMX20_03039 0.49 +2.6 3,177,377 - MPMX20_03039 0.49 -0.2 3,177,381 + MPMX20_03039 0.49 +0.1 3,177,406 + MPMX20_03039 0.51 -0.7 3,177,406 + MPMX20_03039 0.51 +0.6 3,177,429 - MPMX20_03039 0.53 +0.0 3,177,517 + MPMX20_03039 0.60 -1.1 3,177,525 - MPMX20_03039 0.61 +0.2 3,177,525 - MPMX20_03039 0.61 -1.3 3,177,582 + MPMX20_03039 0.66 -0.7 3,177,667 + MPMX20_03039 0.73 -0.3 3,177,686 + MPMX20_03039 0.74 +0.0 3,177,694 - MPMX20_03039 0.75 +1.0 3,177,767 - MPMX20_03039 0.81 -1.0 3,177,774 + MPMX20_03039 0.81 +0.2 3,177,774 + MPMX20_03039 0.81 -1.0 3,177,788 + MPMX20_03039 0.83 -0.9 3,177,931 + -0.2 3,177,931 + +1.6 3,177,939 - -0.2 3,177,939 - +2.6 3,177,939 - +0.4 3,177,951 - +3.2 3,178,028 + -0.3 3,178,036 - +1.6 3,178,057 + MPMX20_03040 0.12 +1.0 3,178,057 + MPMX20_03040 0.12 +4.7 3,178,065 - MPMX20_03040 0.14 -0.2 3,178,076 - MPMX20_03040 0.16 -0.4 3,178,108 - MPMX20_03040 0.23 +1.0 3,178,127 + MPMX20_03040 0.26 +0.3 3,178,133 - MPMX20_03040 0.28 -1.9 3,178,145 - MPMX20_03040 0.30 +1.1 3,178,168 - MPMX20_03040 0.35 +0.6 3,178,173 - MPMX20_03040 0.36 -0.8 3,178,173 - MPMX20_03040 0.36 +0.6 3,178,178 + MPMX20_03040 0.37 -0.2 3,178,264 - MPMX20_03040 0.54 +0.3 3,178,264 - MPMX20_03040 0.54 -0.1 3,178,269 - MPMX20_03040 0.55 -0.5 3,178,342 + MPMX20_03040 0.70 -0.2 3,178,372 - MPMX20_03040 0.76 -2.0 3,178,426 + MPMX20_03040 0.87 +1.3 3,178,446 + +1.6 3,178,452 + +0.9 3,178,452 + +0.4 3,178,452 + +0.0 3,178,452 + +2.0 3,178,462 - +0.3 3,178,510 + +2.6 3,178,550 + -0.6 3,178,578 + MPMX20_03041 0.11 -0.3 3,178,755 + MPMX20_03041 0.32 -0.2 3,178,788 - MPMX20_03041 0.36 -0.2 3,178,803 - MPMX20_03041 0.37 -0.8 3,178,803 - MPMX20_03041 0.37 +0.0 3,178,807 + MPMX20_03041 0.38 -0.4 3,178,823 + MPMX20_03041 0.40 -0.2 3,178,831 - MPMX20_03041 0.41 -1.2 3,178,843 + MPMX20_03041 0.42 +0.2 3,178,856 - MPMX20_03041 0.44 -1.3 3,178,999 - MPMX20_03041 0.61 -0.1 3,179,058 + MPMX20_03041 0.68 -1.6 3,179,059 + MPMX20_03041 0.68 -1.3 3,179,071 + MPMX20_03041 0.69 +1.6 3,179,071 + MPMX20_03041 0.69 -1.9 3,179,071 + MPMX20_03041 0.69 -1.8 3,179,079 - MPMX20_03041 0.70 +1.0 3,179,079 - MPMX20_03041 0.70 -0.6 3,179,094 + MPMX20_03041 0.72 +0.0 3,179,102 - MPMX20_03041 0.73 +0.3 3,179,102 - MPMX20_03041 0.73 -0.2 3,179,132 - MPMX20_03041 0.76 -0.4 3,179,200 - MPMX20_03041 0.84 -0.4 3,179,202 + MPMX20_03041 0.85 +2.0 3,179,202 + MPMX20_03041 0.85 -0.2 3,179,204 + MPMX20_03041 0.85 +1.3 3,179,230 + MPMX20_03041 0.88 +1.2 3,179,316 + +1.0 3,179,326 + +0.5 3,179,326 + +0.5 3,179,326 + -0.1 3,179,334 - +1.6 3,179,334 - -0.4 3,179,334 - -1.3 3,179,334 - +0.7 3,179,348 + -1.2 3,179,360 + -0.5 3,179,360 - +1.2 3,179,433 + -0.5 3,179,481 - -0.9
Or see this region's nucleotide sequence