Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02752 and MPMX20_02753 are separated by 85 nucleotides MPMX20_02753 and MPMX20_02754 are separated by 170 nucleotides
MPMX20_02752: MPMX20_02752 - Protease 2, at 2,905,423 to 2,907,483
_02752
MPMX20_02753: MPMX20_02753 - Inner membrane protein YebE, at 2,907,569 to 2,908,219
_02753
MPMX20_02754: MPMX20_02754 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 2,908,390 to 2,909,568
_02754
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.634 kb on + strand, within MPMX20_02752 at 2906.642 kb on - strand, within MPMX20_02752 at 2906.642 kb on - strand, within MPMX20_02752 at 2906.642 kb on - strand, within MPMX20_02752 at 2906.655 kb on + strand, within MPMX20_02752 at 2906.683 kb on - strand, within MPMX20_02752 at 2906.747 kb on - strand, within MPMX20_02752 at 2906.748 kb on + strand, within MPMX20_02752 at 2906.761 kb on - strand, within MPMX20_02752 at 2906.800 kb on - strand, within MPMX20_02752 at 2906.878 kb on - strand, within MPMX20_02752 at 2907.047 kb on + strand, within MPMX20_02752 at 2907.092 kb on + strand, within MPMX20_02752 at 2907.129 kb on + strand, within MPMX20_02752 at 2907.148 kb on + strand, within MPMX20_02752 at 2907.273 kb on + strand, within MPMX20_02752 at 2907.275 kb on + strand, within MPMX20_02752 at 2907.334 kb on - strand at 2907.336 kb on - strand at 2907.336 kb on - strand at 2907.370 kb on + strand at 2907.378 kb on + strand at 2907.410 kb on + strand at 2907.517 kb on - strand at 2907.570 kb on - strand at 2907.572 kb on + strand at 2907.615 kb on - strand at 2907.643 kb on + strand, within MPMX20_02753 at 2907.722 kb on - strand, within MPMX20_02753 at 2907.807 kb on - strand, within MPMX20_02753 at 2907.809 kb on + strand, within MPMX20_02753 at 2907.838 kb on + strand, within MPMX20_02753 at 2907.868 kb on - strand, within MPMX20_02753 at 2907.964 kb on + strand, within MPMX20_02753 at 2908.209 kb on - strand at 2908.230 kb on + strand at 2908.246 kb on - strand at 2908.458 kb on + strand at 2908.493 kb on - strand at 2908.539 kb on - strand, within MPMX20_02754 at 2908.553 kb on + strand, within MPMX20_02754 at 2908.588 kb on - strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.667 kb on + strand, within MPMX20_02754 at 2908.675 kb on - strand, within MPMX20_02754 at 2908.690 kb on + strand, within MPMX20_02754 at 2908.700 kb on + strand, within MPMX20_02754 at 2908.775 kb on + strand, within MPMX20_02754 at 2908.894 kb on - strand, within MPMX20_02754 at 2908.901 kb on + strand, within MPMX20_02754 at 2908.943 kb on - strand, within MPMX20_02754
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 2,906,634 + MPMX20_02752 0.59 -1.3 2,906,634 + MPMX20_02752 0.59 -1.0 2,906,634 + MPMX20_02752 0.59 -0.1 2,906,634 + MPMX20_02752 0.59 +0.5 2,906,634 + MPMX20_02752 0.59 -2.3 2,906,634 + MPMX20_02752 0.59 -1.7 2,906,642 - MPMX20_02752 0.59 -2.2 2,906,642 - MPMX20_02752 0.59 -1.7 2,906,642 - MPMX20_02752 0.59 -1.1 2,906,655 + MPMX20_02752 0.60 -1.1 2,906,683 - MPMX20_02752 0.61 +0.2 2,906,747 - MPMX20_02752 0.64 +0.1 2,906,748 + MPMX20_02752 0.64 +0.6 2,906,761 - MPMX20_02752 0.65 -1.0 2,906,800 - MPMX20_02752 0.67 +1.0 2,906,878 - MPMX20_02752 0.71 -0.8 2,907,047 + MPMX20_02752 0.79 -1.9 2,907,092 + MPMX20_02752 0.81 -1.8 2,907,129 + MPMX20_02752 0.83 -0.2 2,907,148 + MPMX20_02752 0.84 +0.1 2,907,273 + MPMX20_02752 0.90 +0.1 2,907,275 + MPMX20_02752 0.90 -3.1 2,907,334 - -0.5 2,907,336 - -0.4 2,907,336 - +2.6 2,907,370 + -0.4 2,907,378 + -0.1 2,907,410 + +0.2 2,907,517 - -0.9 2,907,570 - +0.4 2,907,572 + +0.6 2,907,615 - -1.1 2,907,643 + MPMX20_02753 0.11 -0.3 2,907,722 - MPMX20_02753 0.24 +0.8 2,907,807 - MPMX20_02753 0.37 +0.6 2,907,809 + MPMX20_02753 0.37 +0.4 2,907,838 + MPMX20_02753 0.41 +0.6 2,907,868 - MPMX20_02753 0.46 -0.0 2,907,964 + MPMX20_02753 0.61 +3.7 2,908,209 - +0.1 2,908,230 + +0.6 2,908,246 - +0.4 2,908,458 + -0.0 2,908,493 - -0.6 2,908,539 - MPMX20_02754 0.13 -0.8 2,908,553 + MPMX20_02754 0.14 +1.3 2,908,588 - MPMX20_02754 0.17 -1.0 2,908,667 + MPMX20_02754 0.23 +0.4 2,908,667 + MPMX20_02754 0.23 -1.8 2,908,667 + MPMX20_02754 0.23 -0.5 2,908,675 - MPMX20_02754 0.24 -0.1 2,908,690 + MPMX20_02754 0.25 +0.2 2,908,700 + MPMX20_02754 0.26 -0.4 2,908,775 + MPMX20_02754 0.33 -0.3 2,908,894 - MPMX20_02754 0.43 -0.3 2,908,901 + MPMX20_02754 0.43 -0.8 2,908,943 - MPMX20_02754 0.47 +0.0
Or see this region's nucleotide sequence