Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02753

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02752 and MPMX20_02753 are separated by 85 nucleotidesMPMX20_02753 and MPMX20_02754 are separated by 170 nucleotides MPMX20_02752: MPMX20_02752 - Protease 2, at 2,905,423 to 2,907,483 _02752 MPMX20_02753: MPMX20_02753 - Inner membrane protein YebE, at 2,907,569 to 2,908,219 _02753 MPMX20_02754: MPMX20_02754 - Formate-dependent phosphoribosylglycinamide formyltransferase, at 2,908,390 to 2,909,568 _02754 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2906.634 kb on + strand, within MPMX20_02752at 2906.634 kb on + strand, within MPMX20_02752at 2906.634 kb on + strand, within MPMX20_02752at 2906.634 kb on + strand, within MPMX20_02752at 2906.634 kb on + strand, within MPMX20_02752at 2906.634 kb on + strand, within MPMX20_02752at 2906.642 kb on - strand, within MPMX20_02752at 2906.642 kb on - strand, within MPMX20_02752at 2906.642 kb on - strand, within MPMX20_02752at 2906.655 kb on + strand, within MPMX20_02752at 2906.683 kb on - strand, within MPMX20_02752at 2906.747 kb on - strand, within MPMX20_02752at 2906.748 kb on + strand, within MPMX20_02752at 2906.761 kb on - strand, within MPMX20_02752at 2906.800 kb on - strand, within MPMX20_02752at 2906.878 kb on - strand, within MPMX20_02752at 2907.047 kb on + strand, within MPMX20_02752at 2907.092 kb on + strand, within MPMX20_02752at 2907.129 kb on + strand, within MPMX20_02752at 2907.148 kb on + strand, within MPMX20_02752at 2907.273 kb on + strand, within MPMX20_02752at 2907.275 kb on + strand, within MPMX20_02752at 2907.334 kb on - strandat 2907.336 kb on - strandat 2907.336 kb on - strandat 2907.370 kb on + strandat 2907.378 kb on + strandat 2907.410 kb on + strandat 2907.517 kb on - strandat 2907.570 kb on - strandat 2907.572 kb on + strandat 2907.615 kb on - strandat 2907.643 kb on + strand, within MPMX20_02753at 2907.722 kb on - strand, within MPMX20_02753at 2907.807 kb on - strand, within MPMX20_02753at 2907.809 kb on + strand, within MPMX20_02753at 2907.838 kb on + strand, within MPMX20_02753at 2907.868 kb on - strand, within MPMX20_02753at 2907.964 kb on + strand, within MPMX20_02753at 2908.209 kb on - strandat 2908.230 kb on + strandat 2908.246 kb on - strandat 2908.458 kb on + strandat 2908.493 kb on - strandat 2908.539 kb on - strand, within MPMX20_02754at 2908.553 kb on + strand, within MPMX20_02754at 2908.588 kb on - strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.667 kb on + strand, within MPMX20_02754at 2908.675 kb on - strand, within MPMX20_02754at 2908.690 kb on + strand, within MPMX20_02754at 2908.700 kb on + strand, within MPMX20_02754at 2908.775 kb on + strand, within MPMX20_02754at 2908.894 kb on - strand, within MPMX20_02754at 2908.901 kb on + strand, within MPMX20_02754at 2908.943 kb on - strand, within MPMX20_02754

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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2,906,634 + MPMX20_02752 0.59 -1.3
2,906,634 + MPMX20_02752 0.59 -1.0
2,906,634 + MPMX20_02752 0.59 -0.1
2,906,634 + MPMX20_02752 0.59 +0.5
2,906,634 + MPMX20_02752 0.59 -2.3
2,906,634 + MPMX20_02752 0.59 -1.7
2,906,642 - MPMX20_02752 0.59 -2.2
2,906,642 - MPMX20_02752 0.59 -1.7
2,906,642 - MPMX20_02752 0.59 -1.1
2,906,655 + MPMX20_02752 0.60 -1.1
2,906,683 - MPMX20_02752 0.61 +0.2
2,906,747 - MPMX20_02752 0.64 +0.1
2,906,748 + MPMX20_02752 0.64 +0.6
2,906,761 - MPMX20_02752 0.65 -1.0
2,906,800 - MPMX20_02752 0.67 +1.0
2,906,878 - MPMX20_02752 0.71 -0.8
2,907,047 + MPMX20_02752 0.79 -1.9
2,907,092 + MPMX20_02752 0.81 -1.8
2,907,129 + MPMX20_02752 0.83 -0.2
2,907,148 + MPMX20_02752 0.84 +0.1
2,907,273 + MPMX20_02752 0.90 +0.1
2,907,275 + MPMX20_02752 0.90 -3.1
2,907,334 - -0.5
2,907,336 - -0.4
2,907,336 - +2.6
2,907,370 + -0.4
2,907,378 + -0.1
2,907,410 + +0.2
2,907,517 - -0.9
2,907,570 - +0.4
2,907,572 + +0.6
2,907,615 - -1.1
2,907,643 + MPMX20_02753 0.11 -0.3
2,907,722 - MPMX20_02753 0.24 +0.8
2,907,807 - MPMX20_02753 0.37 +0.6
2,907,809 + MPMX20_02753 0.37 +0.4
2,907,838 + MPMX20_02753 0.41 +0.6
2,907,868 - MPMX20_02753 0.46 -0.0
2,907,964 + MPMX20_02753 0.61 +3.7
2,908,209 - +0.1
2,908,230 + +0.6
2,908,246 - +0.4
2,908,458 + -0.0
2,908,493 - -0.6
2,908,539 - MPMX20_02754 0.13 -0.8
2,908,553 + MPMX20_02754 0.14 +1.3
2,908,588 - MPMX20_02754 0.17 -1.0
2,908,667 + MPMX20_02754 0.23 +0.4
2,908,667 + MPMX20_02754 0.23 -1.8
2,908,667 + MPMX20_02754 0.23 -0.5
2,908,675 - MPMX20_02754 0.24 -0.1
2,908,690 + MPMX20_02754 0.25 +0.2
2,908,700 + MPMX20_02754 0.26 -0.4
2,908,775 + MPMX20_02754 0.33 -0.3
2,908,894 - MPMX20_02754 0.43 -0.3
2,908,901 + MPMX20_02754 0.43 -0.8
2,908,943 - MPMX20_02754 0.47 +0.0

Or see this region's nucleotide sequence