Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02283 and MPMX20_02284 are separated by 6 nucleotides MPMX20_02284 and MPMX20_02285 are separated by 82 nucleotides MPMX20_02285 and MPMX20_02286 are separated by 86 nucleotides MPMX20_02286 and MPMX20_02287 are separated by 60 nucleotides
MPMX20_02283: MPMX20_02283 - Protein DipZ, at 2,394,200 to 2,395,390
_02283
MPMX20_02284: MPMX20_02284 - Trans-aconitate 2-methyltransferase, at 2,395,397 to 2,396,155
_02284
MPMX20_02285: MPMX20_02285 - GDP-mannose pyrophosphatase NudK, at 2,396,238 to 2,396,822
_02285
MPMX20_02286: MPMX20_02286 - Glycerol-3-phosphate regulon repressor, at 2,396,909 to 2,397,682
_02286
MPMX20_02287: MPMX20_02287 - hypothetical protein, at 2,397,743 to 2,398,105
_02287
Position (kb)
2396
2397 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 2395.262 kb on + strand, within MPMX20_02283 at 2395.262 kb on + strand, within MPMX20_02283 at 2395.262 kb on + strand, within MPMX20_02283 at 2395.267 kb on + strand, within MPMX20_02283 at 2395.280 kb on - strand at 2395.310 kb on + strand at 2395.312 kb on + strand at 2395.369 kb on + strand at 2395.392 kb on - strand at 2395.395 kb on + strand at 2395.395 kb on + strand at 2395.403 kb on - strand at 2395.403 kb on - strand at 2395.414 kb on - strand at 2395.427 kb on - strand at 2395.525 kb on + strand, within MPMX20_02284 at 2395.561 kb on + strand, within MPMX20_02284 at 2395.561 kb on + strand, within MPMX20_02284 at 2395.571 kb on + strand, within MPMX20_02284 at 2395.580 kb on + strand, within MPMX20_02284 at 2395.588 kb on - strand, within MPMX20_02284 at 2395.593 kb on - strand, within MPMX20_02284 at 2395.612 kb on - strand, within MPMX20_02284 at 2395.638 kb on - strand, within MPMX20_02284 at 2395.676 kb on + strand, within MPMX20_02284 at 2395.676 kb on + strand, within MPMX20_02284 at 2395.676 kb on + strand, within MPMX20_02284 at 2395.684 kb on - strand, within MPMX20_02284 at 2395.684 kb on - strand, within MPMX20_02284 at 2395.684 kb on - strand, within MPMX20_02284 at 2395.684 kb on - strand, within MPMX20_02284 at 2395.690 kb on - strand, within MPMX20_02284 at 2395.706 kb on + strand, within MPMX20_02284 at 2395.714 kb on - strand, within MPMX20_02284 at 2395.735 kb on + strand, within MPMX20_02284 at 2395.887 kb on + strand, within MPMX20_02284 at 2395.935 kb on + strand, within MPMX20_02284 at 2395.977 kb on + strand, within MPMX20_02284 at 2395.977 kb on + strand, within MPMX20_02284 at 2396.024 kb on + strand, within MPMX20_02284 at 2396.024 kb on + strand, within MPMX20_02284 at 2396.068 kb on - strand, within MPMX20_02284 at 2396.069 kb on - strand, within MPMX20_02284 at 2396.203 kb on + strand at 2396.203 kb on + strand at 2396.203 kb on + strand at 2396.203 kb on + strand at 2396.203 kb on + strand at 2396.203 kb on + strand at 2396.211 kb on - strand at 2396.211 kb on - strand at 2396.256 kb on - strand at 2396.271 kb on - strand at 2396.299 kb on - strand, within MPMX20_02285 at 2396.314 kb on - strand, within MPMX20_02285 at 2396.323 kb on + strand, within MPMX20_02285 at 2396.327 kb on + strand, within MPMX20_02285 at 2396.358 kb on - strand, within MPMX20_02285 at 2396.375 kb on + strand, within MPMX20_02285 at 2396.399 kb on - strand, within MPMX20_02285 at 2396.417 kb on - strand, within MPMX20_02285 at 2396.465 kb on - strand, within MPMX20_02285 at 2396.492 kb on + strand, within MPMX20_02285 at 2396.500 kb on - strand, within MPMX20_02285 at 2396.529 kb on - strand, within MPMX20_02285 at 2396.584 kb on + strand, within MPMX20_02285 at 2396.626 kb on + strand, within MPMX20_02285 at 2396.652 kb on + strand, within MPMX20_02285 at 2396.685 kb on + strand, within MPMX20_02285 at 2396.685 kb on + strand, within MPMX20_02285 at 2396.685 kb on + strand, within MPMX20_02285 at 2396.693 kb on - strand, within MPMX20_02285 at 2396.693 kb on - strand, within MPMX20_02285 at 2396.720 kb on - strand, within MPMX20_02285 at 2396.777 kb on + strand at 2396.777 kb on + strand at 2396.777 kb on + strand at 2396.785 kb on - strand at 2396.804 kb on - strand at 2396.911 kb on + strand at 2396.947 kb on + strand at 2396.955 kb on - strand at 2396.960 kb on + strand at 2396.960 kb on + strand at 2396.968 kb on - strand at 2396.973 kb on - strand at 2397.151 kb on + strand, within MPMX20_02286 at 2397.213 kb on + strand, within MPMX20_02286 at 2397.213 kb on + strand, within MPMX20_02286 at 2397.221 kb on - strand, within MPMX20_02286 at 2397.221 kb on - strand, within MPMX20_02286 at 2397.221 kb on - strand, within MPMX20_02286 at 2397.221 kb on - strand, within MPMX20_02286 at 2397.223 kb on + strand, within MPMX20_02286 at 2397.270 kb on + strand, within MPMX20_02286 at 2397.270 kb on + strand, within MPMX20_02286 at 2397.270 kb on + strand, within MPMX20_02286 at 2397.272 kb on - strand, within MPMX20_02286 at 2397.278 kb on - strand, within MPMX20_02286 at 2397.278 kb on - strand, within MPMX20_02286 at 2397.306 kb on + strand, within MPMX20_02286 at 2397.312 kb on + strand, within MPMX20_02286 at 2397.314 kb on - strand, within MPMX20_02286 at 2397.409 kb on - strand, within MPMX20_02286 at 2397.443 kb on + strand, within MPMX20_02286 at 2397.660 kb on + strand at 2397.668 kb on - strand at 2397.684 kb on - strand at 2397.703 kb on - strand at 2397.717 kb on - strand at 2397.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 2,395,262 + MPMX20_02283 0.89 +0.9 2,395,262 + MPMX20_02283 0.89 -0.7 2,395,262 + MPMX20_02283 0.89 +0.6 2,395,267 + MPMX20_02283 0.90 -0.9 2,395,280 - -0.4 2,395,310 + -0.6 2,395,312 + +0.2 2,395,369 + +1.7 2,395,392 - +0.8 2,395,395 + -0.2 2,395,395 + +0.5 2,395,403 - +1.1 2,395,403 - -0.3 2,395,414 - +1.0 2,395,427 - +0.5 2,395,525 + MPMX20_02284 0.17 -0.4 2,395,561 + MPMX20_02284 0.22 +0.3 2,395,561 + MPMX20_02284 0.22 -0.1 2,395,571 + MPMX20_02284 0.23 +0.3 2,395,580 + MPMX20_02284 0.24 -1.5 2,395,588 - MPMX20_02284 0.25 +0.4 2,395,593 - MPMX20_02284 0.26 -1.3 2,395,612 - MPMX20_02284 0.28 -1.2 2,395,638 - MPMX20_02284 0.32 -1.2 2,395,676 + MPMX20_02284 0.37 +2.1 2,395,676 + MPMX20_02284 0.37 +1.1 2,395,676 + MPMX20_02284 0.37 -0.5 2,395,684 - MPMX20_02284 0.38 +0.9 2,395,684 - MPMX20_02284 0.38 +0.1 2,395,684 - MPMX20_02284 0.38 -1.5 2,395,684 - MPMX20_02284 0.38 -0.6 2,395,690 - MPMX20_02284 0.39 +1.1 2,395,706 + MPMX20_02284 0.41 +0.0 2,395,714 - MPMX20_02284 0.42 +0.1 2,395,735 + MPMX20_02284 0.45 -0.9 2,395,887 + MPMX20_02284 0.65 -0.7 2,395,935 + MPMX20_02284 0.71 -0.0 2,395,977 + MPMX20_02284 0.76 +2.1 2,395,977 + MPMX20_02284 0.76 -1.0 2,396,024 + MPMX20_02284 0.83 -0.5 2,396,024 + MPMX20_02284 0.83 -1.7 2,396,068 - MPMX20_02284 0.88 -1.2 2,396,069 - MPMX20_02284 0.89 +1.2 2,396,203 + -0.1 2,396,203 + +0.1 2,396,203 + -2.4 2,396,203 + +1.1 2,396,203 + +0.6 2,396,203 + -0.8 2,396,211 - -1.5 2,396,211 - -1.4 2,396,256 - +1.2 2,396,271 - +0.3 2,396,299 - MPMX20_02285 0.10 -0.8 2,396,314 - MPMX20_02285 0.13 +0.6 2,396,323 + MPMX20_02285 0.15 +0.5 2,396,327 + MPMX20_02285 0.15 +0.8 2,396,358 - MPMX20_02285 0.21 -0.1 2,396,375 + MPMX20_02285 0.23 -1.2 2,396,399 - MPMX20_02285 0.28 +0.8 2,396,417 - MPMX20_02285 0.31 +0.3 2,396,465 - MPMX20_02285 0.39 -0.8 2,396,492 + MPMX20_02285 0.43 -0.7 2,396,500 - MPMX20_02285 0.45 -1.7 2,396,529 - MPMX20_02285 0.50 -0.7 2,396,584 + MPMX20_02285 0.59 -0.8 2,396,626 + MPMX20_02285 0.66 -1.6 2,396,652 + MPMX20_02285 0.71 +9.9 2,396,685 + MPMX20_02285 0.76 -1.5 2,396,685 + MPMX20_02285 0.76 +0.1 2,396,685 + MPMX20_02285 0.76 -0.9 2,396,693 - MPMX20_02285 0.78 +0.2 2,396,693 - MPMX20_02285 0.78 -0.7 2,396,720 - MPMX20_02285 0.82 -1.0 2,396,777 + +0.4 2,396,777 + -1.5 2,396,777 + +1.7 2,396,785 - +1.7 2,396,804 - -0.7 2,396,911 + -0.3 2,396,947 + -0.7 2,396,955 - -0.2 2,396,960 + +1.1 2,396,960 + -0.9 2,396,968 - -1.8 2,396,973 - +1.7 2,397,151 + MPMX20_02286 0.31 +0.2 2,397,213 + MPMX20_02286 0.39 +0.1 2,397,213 + MPMX20_02286 0.39 +1.1 2,397,221 - MPMX20_02286 0.40 +0.2 2,397,221 - MPMX20_02286 0.40 -1.2 2,397,221 - MPMX20_02286 0.40 -0.5 2,397,221 - MPMX20_02286 0.40 -0.8 2,397,223 + MPMX20_02286 0.41 -1.1 2,397,270 + MPMX20_02286 0.47 +0.3 2,397,270 + MPMX20_02286 0.47 -1.1 2,397,270 + MPMX20_02286 0.47 -1.1 2,397,272 - MPMX20_02286 0.47 -1.1 2,397,278 - MPMX20_02286 0.48 -1.2 2,397,278 - MPMX20_02286 0.48 -0.3 2,397,306 + MPMX20_02286 0.51 -0.1 2,397,312 + MPMX20_02286 0.52 -0.7 2,397,314 - MPMX20_02286 0.52 +0.0 2,397,409 - MPMX20_02286 0.65 -1.3 2,397,443 + MPMX20_02286 0.69 +1.9 2,397,660 + +0.4 2,397,668 - -0.7 2,397,684 - +1.2 2,397,703 - -1.0 2,397,717 - -0.0 2,397,721 + -0.3
Or see this region's nucleotide sequence