Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02285

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02283 and MPMX20_02284 are separated by 6 nucleotidesMPMX20_02284 and MPMX20_02285 are separated by 82 nucleotidesMPMX20_02285 and MPMX20_02286 are separated by 86 nucleotidesMPMX20_02286 and MPMX20_02287 are separated by 60 nucleotides MPMX20_02283: MPMX20_02283 - Protein DipZ, at 2,394,200 to 2,395,390 _02283 MPMX20_02284: MPMX20_02284 - Trans-aconitate 2-methyltransferase, at 2,395,397 to 2,396,155 _02284 MPMX20_02285: MPMX20_02285 - GDP-mannose pyrophosphatase NudK, at 2,396,238 to 2,396,822 _02285 MPMX20_02286: MPMX20_02286 - Glycerol-3-phosphate regulon repressor, at 2,396,909 to 2,397,682 _02286 MPMX20_02287: MPMX20_02287 - hypothetical protein, at 2,397,743 to 2,398,105 _02287 Position (kb) 2396 2397Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 2395.262 kb on + strand, within MPMX20_02283at 2395.262 kb on + strand, within MPMX20_02283at 2395.262 kb on + strand, within MPMX20_02283at 2395.267 kb on + strand, within MPMX20_02283at 2395.280 kb on - strandat 2395.310 kb on + strandat 2395.312 kb on + strandat 2395.369 kb on + strandat 2395.392 kb on - strandat 2395.395 kb on + strandat 2395.395 kb on + strandat 2395.403 kb on - strandat 2395.403 kb on - strandat 2395.414 kb on - strandat 2395.427 kb on - strandat 2395.525 kb on + strand, within MPMX20_02284at 2395.561 kb on + strand, within MPMX20_02284at 2395.561 kb on + strand, within MPMX20_02284at 2395.571 kb on + strand, within MPMX20_02284at 2395.580 kb on + strand, within MPMX20_02284at 2395.588 kb on - strand, within MPMX20_02284at 2395.593 kb on - strand, within MPMX20_02284at 2395.612 kb on - strand, within MPMX20_02284at 2395.638 kb on - strand, within MPMX20_02284at 2395.676 kb on + strand, within MPMX20_02284at 2395.676 kb on + strand, within MPMX20_02284at 2395.676 kb on + strand, within MPMX20_02284at 2395.684 kb on - strand, within MPMX20_02284at 2395.684 kb on - strand, within MPMX20_02284at 2395.684 kb on - strand, within MPMX20_02284at 2395.684 kb on - strand, within MPMX20_02284at 2395.690 kb on - strand, within MPMX20_02284at 2395.706 kb on + strand, within MPMX20_02284at 2395.714 kb on - strand, within MPMX20_02284at 2395.735 kb on + strand, within MPMX20_02284at 2395.887 kb on + strand, within MPMX20_02284at 2395.935 kb on + strand, within MPMX20_02284at 2395.977 kb on + strand, within MPMX20_02284at 2395.977 kb on + strand, within MPMX20_02284at 2396.024 kb on + strand, within MPMX20_02284at 2396.024 kb on + strand, within MPMX20_02284at 2396.068 kb on - strand, within MPMX20_02284at 2396.069 kb on - strand, within MPMX20_02284at 2396.203 kb on + strandat 2396.203 kb on + strandat 2396.203 kb on + strandat 2396.203 kb on + strandat 2396.203 kb on + strandat 2396.203 kb on + strandat 2396.211 kb on - strandat 2396.211 kb on - strandat 2396.256 kb on - strandat 2396.271 kb on - strandat 2396.299 kb on - strand, within MPMX20_02285at 2396.314 kb on - strand, within MPMX20_02285at 2396.323 kb on + strand, within MPMX20_02285at 2396.327 kb on + strand, within MPMX20_02285at 2396.358 kb on - strand, within MPMX20_02285at 2396.375 kb on + strand, within MPMX20_02285at 2396.399 kb on - strand, within MPMX20_02285at 2396.417 kb on - strand, within MPMX20_02285at 2396.465 kb on - strand, within MPMX20_02285at 2396.492 kb on + strand, within MPMX20_02285at 2396.500 kb on - strand, within MPMX20_02285at 2396.529 kb on - strand, within MPMX20_02285at 2396.584 kb on + strand, within MPMX20_02285at 2396.626 kb on + strand, within MPMX20_02285at 2396.652 kb on + strand, within MPMX20_02285at 2396.685 kb on + strand, within MPMX20_02285at 2396.685 kb on + strand, within MPMX20_02285at 2396.685 kb on + strand, within MPMX20_02285at 2396.693 kb on - strand, within MPMX20_02285at 2396.693 kb on - strand, within MPMX20_02285at 2396.720 kb on - strand, within MPMX20_02285at 2396.777 kb on + strandat 2396.777 kb on + strandat 2396.777 kb on + strandat 2396.785 kb on - strandat 2396.804 kb on - strandat 2396.911 kb on + strandat 2396.947 kb on + strandat 2396.955 kb on - strandat 2396.960 kb on + strandat 2396.960 kb on + strandat 2396.968 kb on - strandat 2396.973 kb on - strandat 2397.151 kb on + strand, within MPMX20_02286at 2397.213 kb on + strand, within MPMX20_02286at 2397.213 kb on + strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.221 kb on - strand, within MPMX20_02286at 2397.223 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.270 kb on + strand, within MPMX20_02286at 2397.272 kb on - strand, within MPMX20_02286at 2397.278 kb on - strand, within MPMX20_02286at 2397.278 kb on - strand, within MPMX20_02286at 2397.306 kb on + strand, within MPMX20_02286at 2397.312 kb on + strand, within MPMX20_02286at 2397.314 kb on - strand, within MPMX20_02286at 2397.409 kb on - strand, within MPMX20_02286at 2397.443 kb on + strand, within MPMX20_02286at 2397.660 kb on + strandat 2397.668 kb on - strandat 2397.684 kb on - strandat 2397.703 kb on - strandat 2397.717 kb on - strandat 2397.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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2,395,262 + MPMX20_02283 0.89 +0.9
2,395,262 + MPMX20_02283 0.89 -0.7
2,395,262 + MPMX20_02283 0.89 +0.6
2,395,267 + MPMX20_02283 0.90 -0.9
2,395,280 - -0.4
2,395,310 + -0.6
2,395,312 + +0.2
2,395,369 + +1.7
2,395,392 - +0.8
2,395,395 + -0.2
2,395,395 + +0.5
2,395,403 - +1.1
2,395,403 - -0.3
2,395,414 - +1.0
2,395,427 - +0.5
2,395,525 + MPMX20_02284 0.17 -0.4
2,395,561 + MPMX20_02284 0.22 +0.3
2,395,561 + MPMX20_02284 0.22 -0.1
2,395,571 + MPMX20_02284 0.23 +0.3
2,395,580 + MPMX20_02284 0.24 -1.5
2,395,588 - MPMX20_02284 0.25 +0.4
2,395,593 - MPMX20_02284 0.26 -1.3
2,395,612 - MPMX20_02284 0.28 -1.2
2,395,638 - MPMX20_02284 0.32 -1.2
2,395,676 + MPMX20_02284 0.37 +2.1
2,395,676 + MPMX20_02284 0.37 +1.1
2,395,676 + MPMX20_02284 0.37 -0.5
2,395,684 - MPMX20_02284 0.38 +0.9
2,395,684 - MPMX20_02284 0.38 +0.1
2,395,684 - MPMX20_02284 0.38 -1.5
2,395,684 - MPMX20_02284 0.38 -0.6
2,395,690 - MPMX20_02284 0.39 +1.1
2,395,706 + MPMX20_02284 0.41 +0.0
2,395,714 - MPMX20_02284 0.42 +0.1
2,395,735 + MPMX20_02284 0.45 -0.9
2,395,887 + MPMX20_02284 0.65 -0.7
2,395,935 + MPMX20_02284 0.71 -0.0
2,395,977 + MPMX20_02284 0.76 +2.1
2,395,977 + MPMX20_02284 0.76 -1.0
2,396,024 + MPMX20_02284 0.83 -0.5
2,396,024 + MPMX20_02284 0.83 -1.7
2,396,068 - MPMX20_02284 0.88 -1.2
2,396,069 - MPMX20_02284 0.89 +1.2
2,396,203 + -0.1
2,396,203 + +0.1
2,396,203 + -2.4
2,396,203 + +1.1
2,396,203 + +0.6
2,396,203 + -0.8
2,396,211 - -1.5
2,396,211 - -1.4
2,396,256 - +1.2
2,396,271 - +0.3
2,396,299 - MPMX20_02285 0.10 -0.8
2,396,314 - MPMX20_02285 0.13 +0.6
2,396,323 + MPMX20_02285 0.15 +0.5
2,396,327 + MPMX20_02285 0.15 +0.8
2,396,358 - MPMX20_02285 0.21 -0.1
2,396,375 + MPMX20_02285 0.23 -1.2
2,396,399 - MPMX20_02285 0.28 +0.8
2,396,417 - MPMX20_02285 0.31 +0.3
2,396,465 - MPMX20_02285 0.39 -0.8
2,396,492 + MPMX20_02285 0.43 -0.7
2,396,500 - MPMX20_02285 0.45 -1.7
2,396,529 - MPMX20_02285 0.50 -0.7
2,396,584 + MPMX20_02285 0.59 -0.8
2,396,626 + MPMX20_02285 0.66 -1.6
2,396,652 + MPMX20_02285 0.71 +9.9
2,396,685 + MPMX20_02285 0.76 -1.5
2,396,685 + MPMX20_02285 0.76 +0.1
2,396,685 + MPMX20_02285 0.76 -0.9
2,396,693 - MPMX20_02285 0.78 +0.2
2,396,693 - MPMX20_02285 0.78 -0.7
2,396,720 - MPMX20_02285 0.82 -1.0
2,396,777 + +0.4
2,396,777 + -1.5
2,396,777 + +1.7
2,396,785 - +1.7
2,396,804 - -0.7
2,396,911 + -0.3
2,396,947 + -0.7
2,396,955 - -0.2
2,396,960 + +1.1
2,396,960 + -0.9
2,396,968 - -1.8
2,396,973 - +1.7
2,397,151 + MPMX20_02286 0.31 +0.2
2,397,213 + MPMX20_02286 0.39 +0.1
2,397,213 + MPMX20_02286 0.39 +1.1
2,397,221 - MPMX20_02286 0.40 +0.2
2,397,221 - MPMX20_02286 0.40 -1.2
2,397,221 - MPMX20_02286 0.40 -0.5
2,397,221 - MPMX20_02286 0.40 -0.8
2,397,223 + MPMX20_02286 0.41 -1.1
2,397,270 + MPMX20_02286 0.47 +0.3
2,397,270 + MPMX20_02286 0.47 -1.1
2,397,270 + MPMX20_02286 0.47 -1.1
2,397,272 - MPMX20_02286 0.47 -1.1
2,397,278 - MPMX20_02286 0.48 -1.2
2,397,278 - MPMX20_02286 0.48 -0.3
2,397,306 + MPMX20_02286 0.51 -0.1
2,397,312 + MPMX20_02286 0.52 -0.7
2,397,314 - MPMX20_02286 0.52 +0.0
2,397,409 - MPMX20_02286 0.65 -1.3
2,397,443 + MPMX20_02286 0.69 +1.9
2,397,660 + +0.4
2,397,668 - -0.7
2,397,684 - +1.2
2,397,703 - -1.0
2,397,717 - -0.0
2,397,721 + -0.3

Or see this region's nucleotide sequence