Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02249

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02247 and MPMX20_02248 are separated by 61 nucleotidesMPMX20_02248 and MPMX20_02249 are separated by 156 nucleotidesMPMX20_02249 and MPMX20_02250 are separated by 203 nucleotides MPMX20_02247: MPMX20_02247 - HTH-type transcriptional regulator CdhR, at 2,359,285 to 2,360,298 _02247 MPMX20_02248: MPMX20_02248 - hypothetical protein, at 2,360,360 to 2,360,773 _02248 MPMX20_02249: MPMX20_02249 - hypothetical protein, at 2,360,930 to 2,362,033 _02249 MPMX20_02250: MPMX20_02250 - Aliphatic amidase expression-regulating protein, at 2,362,237 to 2,363,508 _02250 Position (kb) 2360 2361 2362 2363Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9 10at 2359.966 kb on + strand, within MPMX20_02247at 2360.052 kb on + strand, within MPMX20_02247at 2360.052 kb on + strand, within MPMX20_02247at 2360.053 kb on + strand, within MPMX20_02247at 2360.108 kb on - strand, within MPMX20_02247at 2360.110 kb on + strand, within MPMX20_02247at 2360.118 kb on - strand, within MPMX20_02247at 2360.159 kb on - strand, within MPMX20_02247at 2360.193 kb on + strand, within MPMX20_02247at 2360.221 kb on - strandat 2360.464 kb on - strand, within MPMX20_02248at 2360.490 kb on - strand, within MPMX20_02248at 2360.497 kb on - strand, within MPMX20_02248at 2360.509 kb on - strand, within MPMX20_02248at 2360.519 kb on - strand, within MPMX20_02248at 2360.620 kb on + strand, within MPMX20_02248at 2360.634 kb on - strand, within MPMX20_02248at 2360.655 kb on + strand, within MPMX20_02248at 2360.658 kb on - strand, within MPMX20_02248at 2360.663 kb on - strand, within MPMX20_02248at 2360.918 kb on + strandat 2360.945 kb on + strandat 2360.953 kb on - strandat 2360.953 kb on - strandat 2360.953 kb on - strandat 2360.999 kb on - strandat 2361.088 kb on + strand, within MPMX20_02249at 2361.109 kb on - strand, within MPMX20_02249at 2361.109 kb on - strand, within MPMX20_02249at 2361.138 kb on + strand, within MPMX20_02249at 2361.174 kb on + strand, within MPMX20_02249at 2361.174 kb on + strand, within MPMX20_02249at 2361.174 kb on + strand, within MPMX20_02249at 2361.182 kb on - strand, within MPMX20_02249at 2361.182 kb on - strand, within MPMX20_02249at 2361.208 kb on + strand, within MPMX20_02249at 2361.208 kb on + strand, within MPMX20_02249at 2361.209 kb on - strand, within MPMX20_02249at 2361.211 kb on - strand, within MPMX20_02249at 2361.218 kb on + strand, within MPMX20_02249at 2361.218 kb on + strand, within MPMX20_02249at 2361.226 kb on - strand, within MPMX20_02249at 2361.226 kb on - strand, within MPMX20_02249at 2361.231 kb on - strand, within MPMX20_02249at 2361.242 kb on + strand, within MPMX20_02249at 2361.430 kb on + strand, within MPMX20_02249at 2361.606 kb on - strand, within MPMX20_02249at 2361.611 kb on - strand, within MPMX20_02249at 2361.705 kb on + strand, within MPMX20_02249at 2361.934 kb on - strandat 2362.036 kb on - strandat 2362.047 kb on + strandat 2362.068 kb on + strandat 2362.071 kb on - strandat 2362.076 kb on - strandat 2362.081 kb on - strandat 2362.081 kb on - strandat 2362.157 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.203 kb on + strandat 2362.211 kb on - strandat 2362.211 kb on - strandat 2362.290 kb on - strandat 2362.399 kb on - strand, within MPMX20_02250at 2362.458 kb on + strand, within MPMX20_02250at 2362.550 kb on + strand, within MPMX20_02250at 2362.556 kb on + strand, within MPMX20_02250at 2362.594 kb on - strand, within MPMX20_02250at 2362.611 kb on + strand, within MPMX20_02250at 2362.611 kb on + strand, within MPMX20_02250at 2362.619 kb on - strand, within MPMX20_02250at 2362.619 kb on - strand, within MPMX20_02250at 2362.626 kb on + strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.634 kb on - strand, within MPMX20_02250at 2362.641 kb on + strand, within MPMX20_02250at 2362.646 kb on + strand, within MPMX20_02250at 2362.720 kb on + strand, within MPMX20_02250at 2362.728 kb on - strand, within MPMX20_02250at 2362.842 kb on + strand, within MPMX20_02250at 2362.842 kb on + strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.850 kb on - strand, within MPMX20_02250at 2362.887 kb on - strand, within MPMX20_02250at 2362.914 kb on - strand, within MPMX20_02250at 2363.016 kb on - strand, within MPMX20_02250

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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2,359,966 + MPMX20_02247 0.67 +0.1
2,360,052 + MPMX20_02247 0.76 +2.1
2,360,052 + MPMX20_02247 0.76 -0.2
2,360,053 + MPMX20_02247 0.76 -0.9
2,360,108 - MPMX20_02247 0.81 +3.2
2,360,110 + MPMX20_02247 0.81 -0.1
2,360,118 - MPMX20_02247 0.82 -0.7
2,360,159 - MPMX20_02247 0.86 -0.8
2,360,193 + MPMX20_02247 0.90 +0.6
2,360,221 - -0.3
2,360,464 - MPMX20_02248 0.25 +2.1
2,360,490 - MPMX20_02248 0.31 -0.0
2,360,497 - MPMX20_02248 0.33 -1.3
2,360,509 - MPMX20_02248 0.36 +0.7
2,360,519 - MPMX20_02248 0.38 -0.6
2,360,620 + MPMX20_02248 0.63 -1.8
2,360,634 - MPMX20_02248 0.66 -0.1
2,360,655 + MPMX20_02248 0.71 -0.1
2,360,658 - MPMX20_02248 0.72 +2.7
2,360,663 - MPMX20_02248 0.73 +0.2
2,360,918 + +1.1
2,360,945 + -1.8
2,360,953 - -2.1
2,360,953 - -2.2
2,360,953 - +1.1
2,360,999 - -0.2
2,361,088 + MPMX20_02249 0.14 +0.9
2,361,109 - MPMX20_02249 0.16 +0.2
2,361,109 - MPMX20_02249 0.16 +1.2
2,361,138 + MPMX20_02249 0.19 +0.2
2,361,174 + MPMX20_02249 0.22 +0.7
2,361,174 + MPMX20_02249 0.22 +0.7
2,361,174 + MPMX20_02249 0.22 +1.1
2,361,182 - MPMX20_02249 0.23 -0.3
2,361,182 - MPMX20_02249 0.23 -0.1
2,361,208 + MPMX20_02249 0.25 +1.1
2,361,208 + MPMX20_02249 0.25 -1.0
2,361,209 - MPMX20_02249 0.25 +1.1
2,361,211 - MPMX20_02249 0.25 +10.0
2,361,218 + MPMX20_02249 0.26 +0.1
2,361,218 + MPMX20_02249 0.26 -0.6
2,361,226 - MPMX20_02249 0.27 -0.8
2,361,226 - MPMX20_02249 0.27 -0.3
2,361,231 - MPMX20_02249 0.27 -0.4
2,361,242 + MPMX20_02249 0.28 -1.0
2,361,430 + MPMX20_02249 0.45 -1.1
2,361,606 - MPMX20_02249 0.61 -0.9
2,361,611 - MPMX20_02249 0.62 +1.1
2,361,705 + MPMX20_02249 0.70 -0.6
2,361,934 - -1.0
2,362,036 - -1.4
2,362,047 + +0.4
2,362,068 + -0.2
2,362,071 - -0.5
2,362,076 - -1.0
2,362,081 - -0.6
2,362,081 - +0.6
2,362,157 + -1.3
2,362,203 + +1.7
2,362,203 + -0.3
2,362,203 + +0.7
2,362,203 + -0.6
2,362,203 + -2.4
2,362,211 - +0.3
2,362,211 - +0.4
2,362,290 - -0.6
2,362,399 - MPMX20_02250 0.13 -1.8
2,362,458 + MPMX20_02250 0.17 +1.1
2,362,550 + MPMX20_02250 0.25 -0.8
2,362,556 + MPMX20_02250 0.25 +0.7
2,362,594 - MPMX20_02250 0.28 -2.3
2,362,611 + MPMX20_02250 0.29 +0.0
2,362,611 + MPMX20_02250 0.29 +0.8
2,362,619 - MPMX20_02250 0.30 +0.1
2,362,619 - MPMX20_02250 0.30 -0.8
2,362,626 + MPMX20_02250 0.31 +1.0
2,362,634 - MPMX20_02250 0.31 -0.6
2,362,634 - MPMX20_02250 0.31 +0.2
2,362,634 - MPMX20_02250 0.31 -0.6
2,362,634 - MPMX20_02250 0.31 +0.4
2,362,634 - MPMX20_02250 0.31 +0.2
2,362,641 + MPMX20_02250 0.32 +0.0
2,362,646 + MPMX20_02250 0.32 -1.4
2,362,720 + MPMX20_02250 0.38 -1.1
2,362,728 - MPMX20_02250 0.39 +0.6
2,362,842 + MPMX20_02250 0.48 +0.7
2,362,842 + MPMX20_02250 0.48 -1.1
2,362,850 - MPMX20_02250 0.48 -1.6
2,362,850 - MPMX20_02250 0.48 +0.7
2,362,850 - MPMX20_02250 0.48 +3.4
2,362,887 - MPMX20_02250 0.51 -0.8
2,362,914 - MPMX20_02250 0.53 +0.7
2,363,016 - MPMX20_02250 0.61 -0.0

Or see this region's nucleotide sequence