Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02247 and MPMX20_02248 are separated by 61 nucleotides MPMX20_02248 and MPMX20_02249 are separated by 156 nucleotides MPMX20_02249 and MPMX20_02250 are separated by 203 nucleotides
MPMX20_02247: MPMX20_02247 - HTH-type transcriptional regulator CdhR, at 2,359,285 to 2,360,298
_02247
MPMX20_02248: MPMX20_02248 - hypothetical protein, at 2,360,360 to 2,360,773
_02248
MPMX20_02249: MPMX20_02249 - hypothetical protein, at 2,360,930 to 2,362,033
_02249
MPMX20_02250: MPMX20_02250 - Aliphatic amidase expression-regulating protein, at 2,362,237 to 2,363,508
_02250
Position (kb)
2360
2361
2362
2363 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 2359.966 kb on + strand, within MPMX20_02247 at 2360.052 kb on + strand, within MPMX20_02247 at 2360.052 kb on + strand, within MPMX20_02247 at 2360.053 kb on + strand, within MPMX20_02247 at 2360.108 kb on - strand, within MPMX20_02247 at 2360.110 kb on + strand, within MPMX20_02247 at 2360.118 kb on - strand, within MPMX20_02247 at 2360.159 kb on - strand, within MPMX20_02247 at 2360.193 kb on + strand, within MPMX20_02247 at 2360.221 kb on - strand at 2360.464 kb on - strand, within MPMX20_02248 at 2360.490 kb on - strand, within MPMX20_02248 at 2360.497 kb on - strand, within MPMX20_02248 at 2360.509 kb on - strand, within MPMX20_02248 at 2360.519 kb on - strand, within MPMX20_02248 at 2360.620 kb on + strand, within MPMX20_02248 at 2360.634 kb on - strand, within MPMX20_02248 at 2360.655 kb on + strand, within MPMX20_02248 at 2360.658 kb on - strand, within MPMX20_02248 at 2360.663 kb on - strand, within MPMX20_02248 at 2360.918 kb on + strand at 2360.945 kb on + strand at 2360.953 kb on - strand at 2360.953 kb on - strand at 2360.953 kb on - strand at 2360.999 kb on - strand at 2361.088 kb on + strand, within MPMX20_02249 at 2361.109 kb on - strand, within MPMX20_02249 at 2361.109 kb on - strand, within MPMX20_02249 at 2361.138 kb on + strand, within MPMX20_02249 at 2361.174 kb on + strand, within MPMX20_02249 at 2361.174 kb on + strand, within MPMX20_02249 at 2361.174 kb on + strand, within MPMX20_02249 at 2361.182 kb on - strand, within MPMX20_02249 at 2361.182 kb on - strand, within MPMX20_02249 at 2361.208 kb on + strand, within MPMX20_02249 at 2361.208 kb on + strand, within MPMX20_02249 at 2361.209 kb on - strand, within MPMX20_02249 at 2361.211 kb on - strand, within MPMX20_02249 at 2361.218 kb on + strand, within MPMX20_02249 at 2361.218 kb on + strand, within MPMX20_02249 at 2361.226 kb on - strand, within MPMX20_02249 at 2361.226 kb on - strand, within MPMX20_02249 at 2361.231 kb on - strand, within MPMX20_02249 at 2361.242 kb on + strand, within MPMX20_02249 at 2361.430 kb on + strand, within MPMX20_02249 at 2361.606 kb on - strand, within MPMX20_02249 at 2361.611 kb on - strand, within MPMX20_02249 at 2361.705 kb on + strand, within MPMX20_02249 at 2361.934 kb on - strand at 2362.036 kb on - strand at 2362.047 kb on + strand at 2362.068 kb on + strand at 2362.071 kb on - strand at 2362.076 kb on - strand at 2362.081 kb on - strand at 2362.081 kb on - strand at 2362.157 kb on + strand at 2362.203 kb on + strand at 2362.203 kb on + strand at 2362.203 kb on + strand at 2362.203 kb on + strand at 2362.203 kb on + strand at 2362.211 kb on - strand at 2362.211 kb on - strand at 2362.290 kb on - strand at 2362.399 kb on - strand, within MPMX20_02250 at 2362.458 kb on + strand, within MPMX20_02250 at 2362.550 kb on + strand, within MPMX20_02250 at 2362.556 kb on + strand, within MPMX20_02250 at 2362.594 kb on - strand, within MPMX20_02250 at 2362.611 kb on + strand, within MPMX20_02250 at 2362.611 kb on + strand, within MPMX20_02250 at 2362.619 kb on - strand, within MPMX20_02250 at 2362.619 kb on - strand, within MPMX20_02250 at 2362.626 kb on + strand, within MPMX20_02250 at 2362.634 kb on - strand, within MPMX20_02250 at 2362.634 kb on - strand, within MPMX20_02250 at 2362.634 kb on - strand, within MPMX20_02250 at 2362.634 kb on - strand, within MPMX20_02250 at 2362.634 kb on - strand, within MPMX20_02250 at 2362.641 kb on + strand, within MPMX20_02250 at 2362.646 kb on + strand, within MPMX20_02250 at 2362.720 kb on + strand, within MPMX20_02250 at 2362.728 kb on - strand, within MPMX20_02250 at 2362.842 kb on + strand, within MPMX20_02250 at 2362.842 kb on + strand, within MPMX20_02250 at 2362.850 kb on - strand, within MPMX20_02250 at 2362.850 kb on - strand, within MPMX20_02250 at 2362.850 kb on - strand, within MPMX20_02250 at 2362.887 kb on - strand, within MPMX20_02250 at 2362.914 kb on - strand, within MPMX20_02250 at 2363.016 kb on - strand, within MPMX20_02250
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 2,359,966 + MPMX20_02247 0.67 +0.1 2,360,052 + MPMX20_02247 0.76 +2.1 2,360,052 + MPMX20_02247 0.76 -0.2 2,360,053 + MPMX20_02247 0.76 -0.9 2,360,108 - MPMX20_02247 0.81 +3.2 2,360,110 + MPMX20_02247 0.81 -0.1 2,360,118 - MPMX20_02247 0.82 -0.7 2,360,159 - MPMX20_02247 0.86 -0.8 2,360,193 + MPMX20_02247 0.90 +0.6 2,360,221 - -0.3 2,360,464 - MPMX20_02248 0.25 +2.1 2,360,490 - MPMX20_02248 0.31 -0.0 2,360,497 - MPMX20_02248 0.33 -1.3 2,360,509 - MPMX20_02248 0.36 +0.7 2,360,519 - MPMX20_02248 0.38 -0.6 2,360,620 + MPMX20_02248 0.63 -1.8 2,360,634 - MPMX20_02248 0.66 -0.1 2,360,655 + MPMX20_02248 0.71 -0.1 2,360,658 - MPMX20_02248 0.72 +2.7 2,360,663 - MPMX20_02248 0.73 +0.2 2,360,918 + +1.1 2,360,945 + -1.8 2,360,953 - -2.1 2,360,953 - -2.2 2,360,953 - +1.1 2,360,999 - -0.2 2,361,088 + MPMX20_02249 0.14 +0.9 2,361,109 - MPMX20_02249 0.16 +0.2 2,361,109 - MPMX20_02249 0.16 +1.2 2,361,138 + MPMX20_02249 0.19 +0.2 2,361,174 + MPMX20_02249 0.22 +0.7 2,361,174 + MPMX20_02249 0.22 +0.7 2,361,174 + MPMX20_02249 0.22 +1.1 2,361,182 - MPMX20_02249 0.23 -0.3 2,361,182 - MPMX20_02249 0.23 -0.1 2,361,208 + MPMX20_02249 0.25 +1.1 2,361,208 + MPMX20_02249 0.25 -1.0 2,361,209 - MPMX20_02249 0.25 +1.1 2,361,211 - MPMX20_02249 0.25 +10.0 2,361,218 + MPMX20_02249 0.26 +0.1 2,361,218 + MPMX20_02249 0.26 -0.6 2,361,226 - MPMX20_02249 0.27 -0.8 2,361,226 - MPMX20_02249 0.27 -0.3 2,361,231 - MPMX20_02249 0.27 -0.4 2,361,242 + MPMX20_02249 0.28 -1.0 2,361,430 + MPMX20_02249 0.45 -1.1 2,361,606 - MPMX20_02249 0.61 -0.9 2,361,611 - MPMX20_02249 0.62 +1.1 2,361,705 + MPMX20_02249 0.70 -0.6 2,361,934 - -1.0 2,362,036 - -1.4 2,362,047 + +0.4 2,362,068 + -0.2 2,362,071 - -0.5 2,362,076 - -1.0 2,362,081 - -0.6 2,362,081 - +0.6 2,362,157 + -1.3 2,362,203 + +1.7 2,362,203 + -0.3 2,362,203 + +0.7 2,362,203 + -0.6 2,362,203 + -2.4 2,362,211 - +0.3 2,362,211 - +0.4 2,362,290 - -0.6 2,362,399 - MPMX20_02250 0.13 -1.8 2,362,458 + MPMX20_02250 0.17 +1.1 2,362,550 + MPMX20_02250 0.25 -0.8 2,362,556 + MPMX20_02250 0.25 +0.7 2,362,594 - MPMX20_02250 0.28 -2.3 2,362,611 + MPMX20_02250 0.29 +0.0 2,362,611 + MPMX20_02250 0.29 +0.8 2,362,619 - MPMX20_02250 0.30 +0.1 2,362,619 - MPMX20_02250 0.30 -0.8 2,362,626 + MPMX20_02250 0.31 +1.0 2,362,634 - MPMX20_02250 0.31 -0.6 2,362,634 - MPMX20_02250 0.31 +0.2 2,362,634 - MPMX20_02250 0.31 -0.6 2,362,634 - MPMX20_02250 0.31 +0.4 2,362,634 - MPMX20_02250 0.31 +0.2 2,362,641 + MPMX20_02250 0.32 +0.0 2,362,646 + MPMX20_02250 0.32 -1.4 2,362,720 + MPMX20_02250 0.38 -1.1 2,362,728 - MPMX20_02250 0.39 +0.6 2,362,842 + MPMX20_02250 0.48 +0.7 2,362,842 + MPMX20_02250 0.48 -1.1 2,362,850 - MPMX20_02250 0.48 -1.6 2,362,850 - MPMX20_02250 0.48 +0.7 2,362,850 - MPMX20_02250 0.48 +3.4 2,362,887 - MPMX20_02250 0.51 -0.8 2,362,914 - MPMX20_02250 0.53 +0.7 2,363,016 - MPMX20_02250 0.61 -0.0
Or see this region's nucleotide sequence