Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01659 and MPMX20_01660 are separated by 144 nucleotides MPMX20_01660 and MPMX20_01661 overlap by 1 nucleotides MPMX20_01661 and MPMX20_01662 are separated by 14 nucleotides
MPMX20_01659: MPMX20_01659 - putative allantoin permease, at 1,757,913 to 1,759,409
_01659
MPMX20_01660: MPMX20_01660 - hypothetical protein, at 1,759,554 to 1,760,270
_01660
MPMX20_01661: MPMX20_01661 - Hydantoin racemase, at 1,760,270 to 1,761,013
_01661
MPMX20_01662: MPMX20_01662 - hypothetical protein, at 1,761,028 to 1,761,960
_01662
Position (kb)
1760
1761
1762 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1759.300 kb on + strand at 1759.332 kb on - strand at 1759.343 kb on + strand at 1759.351 kb on - strand at 1759.351 kb on - strand at 1759.386 kb on - strand at 1759.386 kb on - strand at 1759.413 kb on + strand at 1759.442 kb on - strand at 1759.557 kb on - strand at 1759.562 kb on + strand at 1759.570 kb on - strand at 1759.571 kb on + strand at 1759.582 kb on + strand at 1759.582 kb on + strand at 1759.582 kb on + strand at 1759.590 kb on - strand at 1759.647 kb on - strand, within MPMX20_01660 at 1759.652 kb on - strand, within MPMX20_01660 at 1759.686 kb on + strand, within MPMX20_01660 at 1759.691 kb on + strand, within MPMX20_01660 at 1759.733 kb on - strand, within MPMX20_01660 at 1759.744 kb on - strand, within MPMX20_01660 at 1759.759 kb on + strand, within MPMX20_01660 at 1759.759 kb on + strand, within MPMX20_01660 at 1759.779 kb on - strand, within MPMX20_01660 at 1759.782 kb on + strand, within MPMX20_01660 at 1759.838 kb on + strand, within MPMX20_01660 at 1759.846 kb on - strand, within MPMX20_01660 at 1759.882 kb on - strand, within MPMX20_01660 at 1759.938 kb on + strand, within MPMX20_01660 at 1759.938 kb on + strand, within MPMX20_01660 at 1759.996 kb on - strand, within MPMX20_01660 at 1760.043 kb on - strand, within MPMX20_01660 at 1760.057 kb on + strand, within MPMX20_01660 at 1760.218 kb on + strand at 1760.262 kb on - strand at 1760.296 kb on - strand at 1760.296 kb on - strand at 1760.307 kb on - strand at 1760.391 kb on + strand, within MPMX20_01661 at 1760.404 kb on - strand, within MPMX20_01661 at 1760.406 kb on + strand, within MPMX20_01661 at 1760.447 kb on - strand, within MPMX20_01661 at 1760.471 kb on + strand, within MPMX20_01661 at 1760.487 kb on - strand, within MPMX20_01661 at 1760.513 kb on - strand, within MPMX20_01661 at 1760.522 kb on - strand, within MPMX20_01661 at 1760.589 kb on - strand, within MPMX20_01661 at 1760.665 kb on + strand, within MPMX20_01661 at 1760.693 kb on + strand, within MPMX20_01661 at 1760.929 kb on - strand, within MPMX20_01661 at 1760.951 kb on + strand at 1760.997 kb on - strand at 1761.106 kb on - strand at 1761.130 kb on + strand, within MPMX20_01662 at 1761.190 kb on - strand, within MPMX20_01662 at 1761.291 kb on - strand, within MPMX20_01662 at 1761.391 kb on + strand, within MPMX20_01662 at 1761.468 kb on + strand, within MPMX20_01662 at 1761.468 kb on + strand, within MPMX20_01662 at 1761.476 kb on - strand, within MPMX20_01662 at 1761.476 kb on - strand, within MPMX20_01662 at 1761.484 kb on + strand, within MPMX20_01662 at 1761.588 kb on - strand, within MPMX20_01662 at 1761.603 kb on - strand, within MPMX20_01662 at 1761.633 kb on - strand, within MPMX20_01662 at 1761.661 kb on - strand, within MPMX20_01662 at 1761.664 kb on + strand, within MPMX20_01662 at 1761.717 kb on + strand, within MPMX20_01662 at 1761.723 kb on - strand, within MPMX20_01662 at 1761.735 kb on + strand, within MPMX20_01662 at 1761.735 kb on + strand, within MPMX20_01662 at 1761.743 kb on - strand, within MPMX20_01662 at 1761.780 kb on + strand, within MPMX20_01662 at 1761.875 kb on + strand at 1761.880 kb on + strand at 1761.900 kb on + strand at 1761.900 kb on + strand at 1761.905 kb on + strand at 1761.913 kb on - strand at 1761.963 kb on + strand at 1761.971 kb on - strand at 1761.993 kb on - strand at 1762.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 1,759,300 + -1.7 1,759,332 - +0.5 1,759,343 + -1.4 1,759,351 - -0.5 1,759,351 - +0.6 1,759,386 - +0.6 1,759,386 - -0.1 1,759,413 + +1.1 1,759,442 - +0.9 1,759,557 - +1.0 1,759,562 + -0.9 1,759,570 - -0.7 1,759,571 + +0.5 1,759,582 + +0.9 1,759,582 + -1.0 1,759,582 + -1.1 1,759,590 - +0.7 1,759,647 - MPMX20_01660 0.13 -0.7 1,759,652 - MPMX20_01660 0.14 -0.9 1,759,686 + MPMX20_01660 0.18 -0.6 1,759,691 + MPMX20_01660 0.19 -0.0 1,759,733 - MPMX20_01660 0.25 +1.5 1,759,744 - MPMX20_01660 0.26 -0.4 1,759,759 + MPMX20_01660 0.29 -0.3 1,759,759 + MPMX20_01660 0.29 +0.4 1,759,779 - MPMX20_01660 0.31 -0.4 1,759,782 + MPMX20_01660 0.32 +0.7 1,759,838 + MPMX20_01660 0.40 +0.2 1,759,846 - MPMX20_01660 0.41 -1.1 1,759,882 - MPMX20_01660 0.46 +1.2 1,759,938 + MPMX20_01660 0.54 +2.4 1,759,938 + MPMX20_01660 0.54 -1.0 1,759,996 - MPMX20_01660 0.62 -1.7 1,760,043 - MPMX20_01660 0.68 +0.5 1,760,057 + MPMX20_01660 0.70 +0.7 1,760,218 + -1.5 1,760,262 - -1.2 1,760,296 - -0.0 1,760,296 - -0.6 1,760,307 - -0.1 1,760,391 + MPMX20_01661 0.16 +4.2 1,760,404 - MPMX20_01661 0.18 -0.2 1,760,406 + MPMX20_01661 0.18 -0.1 1,760,447 - MPMX20_01661 0.24 +2.5 1,760,471 + MPMX20_01661 0.27 -0.9 1,760,487 - MPMX20_01661 0.29 +0.2 1,760,513 - MPMX20_01661 0.33 +0.9 1,760,522 - MPMX20_01661 0.34 +0.7 1,760,589 - MPMX20_01661 0.43 -2.4 1,760,665 + MPMX20_01661 0.53 -0.2 1,760,693 + MPMX20_01661 0.57 +0.0 1,760,929 - MPMX20_01661 0.89 +0.9 1,760,951 + -0.4 1,760,997 - -0.5 1,761,106 - -1.2 1,761,130 + MPMX20_01662 0.11 -1.3 1,761,190 - MPMX20_01662 0.17 -0.3 1,761,291 - MPMX20_01662 0.28 -0.4 1,761,391 + MPMX20_01662 0.39 -0.1 1,761,468 + MPMX20_01662 0.47 -1.1 1,761,468 + MPMX20_01662 0.47 -1.0 1,761,476 - MPMX20_01662 0.48 -0.7 1,761,476 - MPMX20_01662 0.48 +0.7 1,761,484 + MPMX20_01662 0.49 -0.9 1,761,588 - MPMX20_01662 0.60 -0.1 1,761,603 - MPMX20_01662 0.62 +0.9 1,761,633 - MPMX20_01662 0.65 -0.7 1,761,661 - MPMX20_01662 0.68 +0.4 1,761,664 + MPMX20_01662 0.68 +0.2 1,761,717 + MPMX20_01662 0.74 +0.5 1,761,723 - MPMX20_01662 0.74 -1.1 1,761,735 + MPMX20_01662 0.76 -0.4 1,761,735 + MPMX20_01662 0.76 -1.6 1,761,743 - MPMX20_01662 0.77 +0.4 1,761,780 + MPMX20_01662 0.81 -2.5 1,761,875 + -1.1 1,761,880 + +0.6 1,761,900 + +0.7 1,761,900 + +1.3 1,761,905 + +0.8 1,761,913 - +0.4 1,761,963 + -0.3 1,761,971 - +1.0 1,761,993 - +0.7 1,762,003 - -0.8
Or see this region's nucleotide sequence