Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01661

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01659 and MPMX20_01660 are separated by 144 nucleotidesMPMX20_01660 and MPMX20_01661 overlap by 1 nucleotidesMPMX20_01661 and MPMX20_01662 are separated by 14 nucleotides MPMX20_01659: MPMX20_01659 - putative allantoin permease, at 1,757,913 to 1,759,409 _01659 MPMX20_01660: MPMX20_01660 - hypothetical protein, at 1,759,554 to 1,760,270 _01660 MPMX20_01661: MPMX20_01661 - Hydantoin racemase, at 1,760,270 to 1,761,013 _01661 MPMX20_01662: MPMX20_01662 - hypothetical protein, at 1,761,028 to 1,761,960 _01662 Position (kb) 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1759.300 kb on + strandat 1759.332 kb on - strandat 1759.343 kb on + strandat 1759.351 kb on - strandat 1759.351 kb on - strandat 1759.386 kb on - strandat 1759.386 kb on - strandat 1759.413 kb on + strandat 1759.442 kb on - strandat 1759.557 kb on - strandat 1759.562 kb on + strandat 1759.570 kb on - strandat 1759.571 kb on + strandat 1759.582 kb on + strandat 1759.582 kb on + strandat 1759.582 kb on + strandat 1759.590 kb on - strandat 1759.647 kb on - strand, within MPMX20_01660at 1759.652 kb on - strand, within MPMX20_01660at 1759.686 kb on + strand, within MPMX20_01660at 1759.691 kb on + strand, within MPMX20_01660at 1759.733 kb on - strand, within MPMX20_01660at 1759.744 kb on - strand, within MPMX20_01660at 1759.759 kb on + strand, within MPMX20_01660at 1759.759 kb on + strand, within MPMX20_01660at 1759.779 kb on - strand, within MPMX20_01660at 1759.782 kb on + strand, within MPMX20_01660at 1759.838 kb on + strand, within MPMX20_01660at 1759.846 kb on - strand, within MPMX20_01660at 1759.882 kb on - strand, within MPMX20_01660at 1759.938 kb on + strand, within MPMX20_01660at 1759.938 kb on + strand, within MPMX20_01660at 1759.996 kb on - strand, within MPMX20_01660at 1760.043 kb on - strand, within MPMX20_01660at 1760.057 kb on + strand, within MPMX20_01660at 1760.218 kb on + strandat 1760.262 kb on - strandat 1760.296 kb on - strandat 1760.296 kb on - strandat 1760.307 kb on - strandat 1760.391 kb on + strand, within MPMX20_01661at 1760.404 kb on - strand, within MPMX20_01661at 1760.406 kb on + strand, within MPMX20_01661at 1760.447 kb on - strand, within MPMX20_01661at 1760.471 kb on + strand, within MPMX20_01661at 1760.487 kb on - strand, within MPMX20_01661at 1760.513 kb on - strand, within MPMX20_01661at 1760.522 kb on - strand, within MPMX20_01661at 1760.589 kb on - strand, within MPMX20_01661at 1760.665 kb on + strand, within MPMX20_01661at 1760.693 kb on + strand, within MPMX20_01661at 1760.929 kb on - strand, within MPMX20_01661at 1760.951 kb on + strandat 1760.997 kb on - strandat 1761.106 kb on - strandat 1761.130 kb on + strand, within MPMX20_01662at 1761.190 kb on - strand, within MPMX20_01662at 1761.291 kb on - strand, within MPMX20_01662at 1761.391 kb on + strand, within MPMX20_01662at 1761.468 kb on + strand, within MPMX20_01662at 1761.468 kb on + strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.476 kb on - strand, within MPMX20_01662at 1761.484 kb on + strand, within MPMX20_01662at 1761.588 kb on - strand, within MPMX20_01662at 1761.603 kb on - strand, within MPMX20_01662at 1761.633 kb on - strand, within MPMX20_01662at 1761.661 kb on - strand, within MPMX20_01662at 1761.664 kb on + strand, within MPMX20_01662at 1761.717 kb on + strand, within MPMX20_01662at 1761.723 kb on - strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.735 kb on + strand, within MPMX20_01662at 1761.743 kb on - strand, within MPMX20_01662at 1761.780 kb on + strand, within MPMX20_01662at 1761.875 kb on + strandat 1761.880 kb on + strandat 1761.900 kb on + strandat 1761.900 kb on + strandat 1761.905 kb on + strandat 1761.913 kb on - strandat 1761.963 kb on + strandat 1761.971 kb on - strandat 1761.993 kb on - strandat 1762.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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1,759,300 + -1.7
1,759,332 - +0.5
1,759,343 + -1.4
1,759,351 - -0.5
1,759,351 - +0.6
1,759,386 - +0.6
1,759,386 - -0.1
1,759,413 + +1.1
1,759,442 - +0.9
1,759,557 - +1.0
1,759,562 + -0.9
1,759,570 - -0.7
1,759,571 + +0.5
1,759,582 + +0.9
1,759,582 + -1.0
1,759,582 + -1.1
1,759,590 - +0.7
1,759,647 - MPMX20_01660 0.13 -0.7
1,759,652 - MPMX20_01660 0.14 -0.9
1,759,686 + MPMX20_01660 0.18 -0.6
1,759,691 + MPMX20_01660 0.19 -0.0
1,759,733 - MPMX20_01660 0.25 +1.5
1,759,744 - MPMX20_01660 0.26 -0.4
1,759,759 + MPMX20_01660 0.29 -0.3
1,759,759 + MPMX20_01660 0.29 +0.4
1,759,779 - MPMX20_01660 0.31 -0.4
1,759,782 + MPMX20_01660 0.32 +0.7
1,759,838 + MPMX20_01660 0.40 +0.2
1,759,846 - MPMX20_01660 0.41 -1.1
1,759,882 - MPMX20_01660 0.46 +1.2
1,759,938 + MPMX20_01660 0.54 +2.4
1,759,938 + MPMX20_01660 0.54 -1.0
1,759,996 - MPMX20_01660 0.62 -1.7
1,760,043 - MPMX20_01660 0.68 +0.5
1,760,057 + MPMX20_01660 0.70 +0.7
1,760,218 + -1.5
1,760,262 - -1.2
1,760,296 - -0.0
1,760,296 - -0.6
1,760,307 - -0.1
1,760,391 + MPMX20_01661 0.16 +4.2
1,760,404 - MPMX20_01661 0.18 -0.2
1,760,406 + MPMX20_01661 0.18 -0.1
1,760,447 - MPMX20_01661 0.24 +2.5
1,760,471 + MPMX20_01661 0.27 -0.9
1,760,487 - MPMX20_01661 0.29 +0.2
1,760,513 - MPMX20_01661 0.33 +0.9
1,760,522 - MPMX20_01661 0.34 +0.7
1,760,589 - MPMX20_01661 0.43 -2.4
1,760,665 + MPMX20_01661 0.53 -0.2
1,760,693 + MPMX20_01661 0.57 +0.0
1,760,929 - MPMX20_01661 0.89 +0.9
1,760,951 + -0.4
1,760,997 - -0.5
1,761,106 - -1.2
1,761,130 + MPMX20_01662 0.11 -1.3
1,761,190 - MPMX20_01662 0.17 -0.3
1,761,291 - MPMX20_01662 0.28 -0.4
1,761,391 + MPMX20_01662 0.39 -0.1
1,761,468 + MPMX20_01662 0.47 -1.1
1,761,468 + MPMX20_01662 0.47 -1.0
1,761,476 - MPMX20_01662 0.48 -0.7
1,761,476 - MPMX20_01662 0.48 +0.7
1,761,484 + MPMX20_01662 0.49 -0.9
1,761,588 - MPMX20_01662 0.60 -0.1
1,761,603 - MPMX20_01662 0.62 +0.9
1,761,633 - MPMX20_01662 0.65 -0.7
1,761,661 - MPMX20_01662 0.68 +0.4
1,761,664 + MPMX20_01662 0.68 +0.2
1,761,717 + MPMX20_01662 0.74 +0.5
1,761,723 - MPMX20_01662 0.74 -1.1
1,761,735 + MPMX20_01662 0.76 -0.4
1,761,735 + MPMX20_01662 0.76 -1.6
1,761,743 - MPMX20_01662 0.77 +0.4
1,761,780 + MPMX20_01662 0.81 -2.5
1,761,875 + -1.1
1,761,880 + +0.6
1,761,900 + +0.7
1,761,900 + +1.3
1,761,905 + +0.8
1,761,913 - +0.4
1,761,963 + -0.3
1,761,971 - +1.0
1,761,993 - +0.7
1,762,003 - -0.8

Or see this region's nucleotide sequence