Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00355 and MPMX20_00356 are separated by 288 nucleotides MPMX20_00356 and MPMX20_00357 overlap by 13 nucleotides MPMX20_00357 and MPMX20_00358 are separated by 16 nucleotides MPMX20_00358 and MPMX20_00359 are separated by 115 nucleotides
MPMX20_00355: MPMX20_00355 - hypothetical protein, at 371,196 to 371,423
_00355
MPMX20_00356: MPMX20_00356 - hypothetical protein, at 371,712 to 372,134
_00356
MPMX20_00357: MPMX20_00357 - hypothetical protein, at 372,122 to 372,544
_00357
MPMX20_00358: MPMX20_00358 - hypothetical protein, at 372,561 to 372,992
_00358
MPMX20_00359: MPMX20_00359 - hypothetical protein, at 373,108 to 373,392
_00359
Position (kb) 372
373 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 371.123 kb on - strand at 371.123 kb on - strand at 371.125 kb on + strand at 371.131 kb on + strand at 371.149 kb on - strand at 371.168 kb on + strand at 371.169 kb on - strand at 371.192 kb on + strand at 371.199 kb on + strand at 371.199 kb on + strand at 371.199 kb on + strand at 371.200 kb on - strand at 371.207 kb on + strand at 371.220 kb on - strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.223 kb on + strand, within MPMX20_00355 at 371.231 kb on - strand, within MPMX20_00355 at 371.231 kb on - strand, within MPMX20_00355 at 371.231 kb on - strand, within MPMX20_00355 at 371.231 kb on - strand, within MPMX20_00355 at 371.231 kb on - strand, within MPMX20_00355 at 371.241 kb on - strand, within MPMX20_00355 at 371.241 kb on - strand, within MPMX20_00355 at 371.241 kb on - strand, within MPMX20_00355 at 371.259 kb on + strand, within MPMX20_00355 at 371.261 kb on + strand, within MPMX20_00355 at 371.306 kb on + strand, within MPMX20_00355 at 371.343 kb on - strand, within MPMX20_00355 at 371.353 kb on - strand, within MPMX20_00355 at 371.408 kb on + strand at 371.410 kb on + strand at 371.416 kb on - strand at 371.417 kb on + strand at 371.418 kb on - strand at 371.418 kb on - strand at 371.457 kb on + strand at 371.473 kb on - strand at 371.478 kb on - strand at 371.502 kb on + strand at 371.510 kb on - strand at 371.512 kb on + strand at 371.522 kb on + strand at 371.530 kb on - strand at 371.535 kb on - strand at 371.569 kb on + strand at 371.570 kb on + strand at 371.570 kb on + strand at 371.577 kb on - strand at 371.577 kb on - strand at 371.592 kb on + strand at 371.631 kb on - strand at 371.640 kb on - strand at 371.647 kb on + strand at 371.647 kb on + strand at 371.655 kb on - strand at 371.665 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.672 kb on + strand at 371.680 kb on - strand at 371.680 kb on - strand at 371.680 kb on - strand at 371.680 kb on - strand at 371.680 kb on - strand at 371.680 kb on - strand at 371.685 kb on - strand at 371.710 kb on - strand at 371.770 kb on + strand, within MPMX20_00356 at 371.780 kb on - strand, within MPMX20_00356 at 371.800 kb on + strand, within MPMX20_00356 at 371.823 kb on + strand, within MPMX20_00356 at 371.828 kb on + strand, within MPMX20_00356 at 371.828 kb on + strand, within MPMX20_00356 at 371.838 kb on + strand, within MPMX20_00356 at 371.855 kb on + strand, within MPMX20_00356 at 371.855 kb on + strand, within MPMX20_00356 at 371.896 kb on + strand, within MPMX20_00356 at 371.897 kb on - strand, within MPMX20_00356 at 371.903 kb on + strand, within MPMX20_00356 at 371.911 kb on - strand, within MPMX20_00356 at 371.923 kb on - strand, within MPMX20_00356 at 371.923 kb on - strand, within MPMX20_00356 at 371.928 kb on - strand, within MPMX20_00356 at 371.935 kb on - strand, within MPMX20_00356 at 371.954 kb on + strand, within MPMX20_00356 at 371.962 kb on + strand, within MPMX20_00356 at 371.962 kb on + strand, within MPMX20_00356 at 371.987 kb on + strand, within MPMX20_00356 at 372.005 kb on + strand, within MPMX20_00356 at 372.005 kb on + strand, within MPMX20_00356 at 372.005 kb on + strand, within MPMX20_00356 at 372.126 kb on - strand at 372.126 kb on - strand at 372.138 kb on - strand at 372.190 kb on + strand, within MPMX20_00357 at 372.193 kb on - strand, within MPMX20_00357 at 372.203 kb on - strand, within MPMX20_00357 at 372.203 kb on - strand, within MPMX20_00357 at 372.214 kb on - strand, within MPMX20_00357 at 372.241 kb on - strand, within MPMX20_00357 at 372.249 kb on - strand, within MPMX20_00357 at 372.273 kb on + strand, within MPMX20_00357 at 372.281 kb on - strand, within MPMX20_00357 at 372.281 kb on - strand, within MPMX20_00357 at 372.319 kb on - strand, within MPMX20_00357 at 372.340 kb on + strand, within MPMX20_00357 at 372.340 kb on + strand, within MPMX20_00357 at 372.403 kb on + strand, within MPMX20_00357 at 372.413 kb on + strand, within MPMX20_00357 at 372.413 kb on + strand, within MPMX20_00357 at 372.423 kb on + strand, within MPMX20_00357 at 372.438 kb on + strand, within MPMX20_00357 at 372.457 kb on + strand, within MPMX20_00357 at 372.457 kb on + strand, within MPMX20_00357 at 372.458 kb on - strand, within MPMX20_00357 at 372.497 kb on - strand, within MPMX20_00357 at 372.523 kb on + strand at 372.558 kb on + strand at 372.558 kb on + strand at 372.566 kb on - strand at 372.566 kb on - strand at 372.571 kb on + strand at 372.582 kb on + strand at 372.591 kb on + strand at 372.599 kb on - strand at 372.660 kb on + strand, within MPMX20_00358 at 372.702 kb on - strand, within MPMX20_00358 at 372.729 kb on + strand, within MPMX20_00358 at 372.788 kb on + strand, within MPMX20_00358 at 372.796 kb on - strand, within MPMX20_00358 at 372.796 kb on - strand, within MPMX20_00358 at 372.819 kb on + strand, within MPMX20_00358 at 372.819 kb on + strand, within MPMX20_00358 at 372.852 kb on - strand, within MPMX20_00358 at 372.854 kb on + strand, within MPMX20_00358 at 372.856 kb on - strand, within MPMX20_00358 at 372.880 kb on + strand, within MPMX20_00358 at 372.881 kb on + strand, within MPMX20_00358 at 372.888 kb on - strand, within MPMX20_00358 at 372.890 kb on + strand, within MPMX20_00358 at 372.890 kb on + strand, within MPMX20_00358 at 372.898 kb on - strand, within MPMX20_00358 at 373.007 kb on + strand at 373.015 kb on - strand at 373.015 kb on - strand at 373.031 kb on + strand at 373.067 kb on - strand at 373.143 kb on + strand, within MPMX20_00359 at 373.145 kb on + strand, within MPMX20_00359 at 373.146 kb on - strand, within MPMX20_00359 at 373.153 kb on - strand, within MPMX20_00359 at 373.153 kb on - strand, within MPMX20_00359 at 373.153 kb on - strand, within MPMX20_00359 at 373.168 kb on - strand, within MPMX20_00359 at 373.192 kb on - strand, within MPMX20_00359 at 373.217 kb on + strand, within MPMX20_00359 at 373.225 kb on - strand, within MPMX20_00359 at 373.239 kb on + strand, within MPMX20_00359 at 373.241 kb on + strand, within MPMX20_00359 at 373.241 kb on + strand, within MPMX20_00359 at 373.249 kb on - strand, within MPMX20_00359 at 373.269 kb on + strand, within MPMX20_00359 at 373.307 kb on - strand, within MPMX20_00359 at 373.314 kb on - strand, within MPMX20_00359 at 373.363 kb on - strand, within MPMX20_00359 at 373.373 kb on - strand at 373.403 kb on + strand at 373.411 kb on - strand at 373.413 kb on - strand at 373.415 kb on + strand at 373.415 kb on + strand at 373.415 kb on + strand at 373.417 kb on + strand at 373.420 kb on + strand at 373.423 kb on - strand at 373.423 kb on - strand at 373.423 kb on - strand at 373.423 kb on - strand at 373.425 kb on + strand at 373.440 kb on - strand at 373.440 kb on - strand at 373.440 kb on - strand at 373.448 kb on - strand at 373.450 kb on - strand at 373.484 kb on - strand at 373.490 kb on + strand at 373.513 kb on - strand at 373.532 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027 remove 371,123 - -0.1 371,123 - +0.4 371,125 + +0.9 371,131 + +1.3 371,149 - +2.4 371,168 + +0.7 371,169 - -0.6 371,192 + +1.7 371,199 + +0.4 371,199 + +0.3 371,199 + -0.4 371,200 - -0.6 371,207 + -1.2 371,220 - MPMX20_00355 0.11 -0.5 371,223 + MPMX20_00355 0.12 +2.3 371,223 + MPMX20_00355 0.12 +0.2 371,223 + MPMX20_00355 0.12 -2.6 371,223 + MPMX20_00355 0.12 -0.5 371,223 + MPMX20_00355 0.12 -0.4 371,223 + MPMX20_00355 0.12 -0.0 371,223 + MPMX20_00355 0.12 +0.3 371,231 - MPMX20_00355 0.15 +1.5 371,231 - MPMX20_00355 0.15 -0.8 371,231 - MPMX20_00355 0.15 +0.2 371,231 - MPMX20_00355 0.15 -0.9 371,231 - MPMX20_00355 0.15 -0.2 371,241 - MPMX20_00355 0.20 +0.1 371,241 - MPMX20_00355 0.20 -0.2 371,241 - MPMX20_00355 0.20 -1.0 371,259 + MPMX20_00355 0.28 -1.6 371,261 + MPMX20_00355 0.29 -0.7 371,306 + MPMX20_00355 0.48 -1.7 371,343 - MPMX20_00355 0.64 -0.9 371,353 - MPMX20_00355 0.69 -0.3 371,408 + +2.4 371,410 + -0.1 371,416 - +2.3 371,417 + +0.2 371,418 - +1.1 371,418 - -1.0 371,457 + +0.1 371,473 - +0.3 371,478 - -0.5 371,502 + +0.6 371,510 - -0.5 371,512 + +1.0 371,522 + -0.2 371,530 - +0.9 371,535 - +0.7 371,569 + +0.7 371,570 + +0.4 371,570 + -0.1 371,577 - +1.5 371,577 - +2.3 371,592 + -0.0 371,631 - -0.9 371,640 - +2.3 371,647 + -0.4 371,647 + -0.5 371,655 - +1.3 371,665 + +0.7 371,672 + -0.7 371,672 + -1.0 371,672 + +0.1 371,672 + +1.0 371,672 + -1.0 371,672 + -1.3 371,672 + +0.5 371,672 + -0.2 371,680 - +0.3 371,680 - -0.5 371,680 - -1.8 371,680 - +1.0 371,680 - -0.4 371,680 - -0.4 371,685 - -1.3 371,710 - +2.0 371,770 + MPMX20_00356 0.14 -2.0 371,780 - MPMX20_00356 0.16 -0.5 371,800 + MPMX20_00356 0.21 -0.8 371,823 + MPMX20_00356 0.26 +1.0 371,828 + MPMX20_00356 0.27 +6.1 371,828 + MPMX20_00356 0.27 -1.2 371,838 + MPMX20_00356 0.30 -0.6 371,855 + MPMX20_00356 0.34 -0.9 371,855 + MPMX20_00356 0.34 +0.7 371,896 + MPMX20_00356 0.43 +2.3 371,897 - MPMX20_00356 0.44 +0.1 371,903 + MPMX20_00356 0.45 -0.3 371,911 - MPMX20_00356 0.47 +0.1 371,923 - MPMX20_00356 0.50 -0.2 371,923 - MPMX20_00356 0.50 -1.9 371,928 - MPMX20_00356 0.51 +1.3 371,935 - MPMX20_00356 0.53 -0.2 371,954 + MPMX20_00356 0.57 -2.0 371,962 + MPMX20_00356 0.59 -1.3 371,962 + MPMX20_00356 0.59 -0.6 371,987 + MPMX20_00356 0.65 +0.8 372,005 + MPMX20_00356 0.69 -1.2 372,005 + MPMX20_00356 0.69 -0.4 372,005 + MPMX20_00356 0.69 +0.5 372,126 - +1.3 372,126 - +0.2 372,138 - +0.3 372,190 + MPMX20_00357 0.16 +0.3 372,193 - MPMX20_00357 0.17 +2.3 372,203 - MPMX20_00357 0.19 -0.1 372,203 - MPMX20_00357 0.19 +0.9 372,214 - MPMX20_00357 0.22 -2.3 372,241 - MPMX20_00357 0.28 -0.8 372,249 - MPMX20_00357 0.30 -1.3 372,273 + MPMX20_00357 0.36 +0.8 372,281 - MPMX20_00357 0.38 -0.3 372,281 - MPMX20_00357 0.38 +4.9 372,319 - MPMX20_00357 0.47 -0.4 372,340 + MPMX20_00357 0.52 -0.7 372,340 + MPMX20_00357 0.52 +2.3 372,403 + MPMX20_00357 0.66 +0.7 372,413 + MPMX20_00357 0.69 -0.5 372,413 + MPMX20_00357 0.69 +0.3 372,423 + MPMX20_00357 0.71 +0.5 372,438 + MPMX20_00357 0.75 +3.3 372,457 + MPMX20_00357 0.79 +0.7 372,457 + MPMX20_00357 0.79 +0.1 372,458 - MPMX20_00357 0.79 +1.2 372,497 - MPMX20_00357 0.89 -0.0 372,523 + +0.5 372,558 + -0.8 372,558 + -0.3 372,566 - +2.6 372,566 - +1.3 372,571 + +1.1 372,582 + -2.7 372,591 + -0.0 372,599 - -0.9 372,660 + MPMX20_00358 0.23 -1.2 372,702 - MPMX20_00358 0.33 -1.0 372,729 + MPMX20_00358 0.39 -1.4 372,788 + MPMX20_00358 0.53 -0.5 372,796 - MPMX20_00358 0.54 -1.6 372,796 - MPMX20_00358 0.54 -1.0 372,819 + MPMX20_00358 0.60 +0.3 372,819 + MPMX20_00358 0.60 +0.3 372,852 - MPMX20_00358 0.67 -0.5 372,854 + MPMX20_00358 0.68 +2.3 372,856 - MPMX20_00358 0.68 -0.1 372,880 + MPMX20_00358 0.74 -0.5 372,881 + MPMX20_00358 0.74 -0.7 372,888 - MPMX20_00358 0.76 -0.2 372,890 + MPMX20_00358 0.76 -0.0 372,890 + MPMX20_00358 0.76 +0.3 372,898 - MPMX20_00358 0.78 -1.2 373,007 + -0.9 373,015 - -1.7 373,015 - -0.9 373,031 + -0.3 373,067 - +0.3 373,143 + MPMX20_00359 0.12 +0.6 373,145 + MPMX20_00359 0.13 -0.3 373,146 - MPMX20_00359 0.13 +3.3 373,153 - MPMX20_00359 0.16 -1.0 373,153 - MPMX20_00359 0.16 -1.1 373,153 - MPMX20_00359 0.16 +0.3 373,168 - MPMX20_00359 0.21 +1.8 373,192 - MPMX20_00359 0.29 +0.1 373,217 + MPMX20_00359 0.38 +0.2 373,225 - MPMX20_00359 0.41 -0.6 373,239 + MPMX20_00359 0.46 +0.5 373,241 + MPMX20_00359 0.47 +1.5 373,241 + MPMX20_00359 0.47 -1.1 373,249 - MPMX20_00359 0.49 -1.2 373,269 + MPMX20_00359 0.56 -0.6 373,307 - MPMX20_00359 0.70 -0.4 373,314 - MPMX20_00359 0.72 -0.2 373,363 - MPMX20_00359 0.89 -0.8 373,373 - -0.2 373,403 + +0.8 373,411 - +0.7 373,413 - +0.3 373,415 + +1.4 373,415 + -0.4 373,415 + -0.0 373,417 + -0.9 373,420 + -1.3 373,423 - -0.4 373,423 - -0.2 373,423 - -0.5 373,423 - -1.1 373,425 + -0.7 373,440 - -2.2 373,440 - +0.2 373,440 - +0.7 373,448 - +1.3 373,450 - +0.2 373,484 - +0.5 373,490 + -0.8 373,513 - +0.3 373,532 + +0.7
Or see this region's nucleotide sequence