Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00317

Experiment: M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00315 and MPMX20_00316 overlap by 4 nucleotidesMPMX20_00316 and MPMX20_00317 are separated by 9 nucleotidesMPMX20_00317 and MPMX20_00318 overlap by 4 nucleotidesMPMX20_00318 and MPMX20_00319 overlap by 8 nucleotides MPMX20_00315: MPMX20_00315 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase, at 335,310 to 336,446 _00315 MPMX20_00316: MPMX20_00316 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL, at 336,443 to 337,123 _00316 MPMX20_00317: MPMX20_00317 - Putative phosphonates utilization ATP-binding protein PhnK, at 337,133 to 337,888 _00317 MPMX20_00318: MPMX20_00318 - Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase, at 337,885 to 338,730 _00318 MPMX20_00319: MPMX20_00319 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 338,723 to 339,787 _00319 Position (kb) 337 338Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 336.173 kb on - strand, within MPMX20_00315at 336.228 kb on + strand, within MPMX20_00315at 336.345 kb on + strandat 336.377 kb on - strandat 336.425 kb on + strandat 336.433 kb on - strandat 336.534 kb on + strand, within MPMX20_00316at 336.542 kb on - strand, within MPMX20_00316at 336.542 kb on - strand, within MPMX20_00316at 336.561 kb on - strand, within MPMX20_00316at 336.572 kb on + strand, within MPMX20_00316at 336.685 kb on + strand, within MPMX20_00316at 336.760 kb on - strand, within MPMX20_00316at 336.776 kb on - strand, within MPMX20_00316at 336.800 kb on - strand, within MPMX20_00316at 336.802 kb on + strand, within MPMX20_00316at 336.810 kb on - strand, within MPMX20_00316at 336.892 kb on + strand, within MPMX20_00316at 336.932 kb on - strand, within MPMX20_00316at 336.976 kb on - strand, within MPMX20_00316at 337.012 kb on - strand, within MPMX20_00316at 337.017 kb on + strand, within MPMX20_00316at 337.033 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.049 kb on + strand, within MPMX20_00316at 337.057 kb on - strandat 337.094 kb on + strandat 337.102 kb on - strandat 337.118 kb on + strandat 337.118 kb on + strandat 337.118 kb on + strandat 337.126 kb on - strandat 337.129 kb on - strandat 337.156 kb on - strandat 337.279 kb on - strand, within MPMX20_00317at 337.323 kb on - strand, within MPMX20_00317at 337.323 kb on - strand, within MPMX20_00317at 337.366 kb on + strand, within MPMX20_00317at 337.368 kb on - strand, within MPMX20_00317at 337.384 kb on - strand, within MPMX20_00317at 337.457 kb on + strand, within MPMX20_00317at 337.519 kb on - strand, within MPMX20_00317at 337.519 kb on - strand, within MPMX20_00317at 337.672 kb on + strand, within MPMX20_00317at 337.729 kb on + strand, within MPMX20_00317at 337.768 kb on + strand, within MPMX20_00317at 337.795 kb on - strand, within MPMX20_00317at 337.795 kb on - strand, within MPMX20_00317at 337.801 kb on - strand, within MPMX20_00317at 337.810 kb on + strand, within MPMX20_00317at 337.811 kb on - strand, within MPMX20_00317at 337.841 kb on - strandat 337.845 kb on + strandat 337.853 kb on - strandat 337.854 kb on - strandat 337.869 kb on + strandat 338.025 kb on + strand, within MPMX20_00318at 338.071 kb on + strand, within MPMX20_00318at 338.071 kb on + strand, within MPMX20_00318at 338.079 kb on - strand, within MPMX20_00318at 338.087 kb on + strand, within MPMX20_00318at 338.119 kb on - strand, within MPMX20_00318at 338.121 kb on + strand, within MPMX20_00318at 338.144 kb on + strand, within MPMX20_00318at 338.172 kb on + strand, within MPMX20_00318at 338.215 kb on + strand, within MPMX20_00318at 338.215 kb on + strand, within MPMX20_00318at 338.222 kb on - strand, within MPMX20_00318at 338.223 kb on - strand, within MPMX20_00318at 338.223 kb on - strand, within MPMX20_00318at 338.223 kb on - strand, within MPMX20_00318at 338.223 kb on - strand, within MPMX20_00318at 338.279 kb on - strand, within MPMX20_00318at 338.279 kb on - strand, within MPMX20_00318at 338.286 kb on + strand, within MPMX20_00318at 338.286 kb on + strand, within MPMX20_00318at 338.294 kb on - strand, within MPMX20_00318at 338.294 kb on - strand, within MPMX20_00318at 338.325 kb on + strand, within MPMX20_00318at 338.333 kb on - strand, within MPMX20_00318at 338.335 kb on + strand, within MPMX20_00318at 338.338 kb on - strand, within MPMX20_00318at 338.414 kb on + strand, within MPMX20_00318at 338.430 kb on + strand, within MPMX20_00318at 338.458 kb on - strand, within MPMX20_00318at 338.458 kb on - strand, within MPMX20_00318at 338.459 kb on + strand, within MPMX20_00318at 338.705 kb on + strandat 338.751 kb on + strandat 338.796 kb on + strandat 338.823 kb on + strandat 338.846 kb on - strand, within MPMX20_00319

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Chryseobacterium proteolyticum TBS_027
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336,173 - MPMX20_00315 0.76 -0.7
336,228 + MPMX20_00315 0.81 -0.1
336,345 + +0.5
336,377 - -1.2
336,425 + +0.7
336,433 - -2.6
336,534 + MPMX20_00316 0.13 -0.2
336,542 - MPMX20_00316 0.15 +0.0
336,542 - MPMX20_00316 0.15 -0.7
336,561 - MPMX20_00316 0.17 +0.2
336,572 + MPMX20_00316 0.19 -0.9
336,685 + MPMX20_00316 0.36 +0.7
336,760 - MPMX20_00316 0.47 -0.0
336,776 - MPMX20_00316 0.49 -0.9
336,800 - MPMX20_00316 0.52 -0.5
336,802 + MPMX20_00316 0.53 -0.8
336,810 - MPMX20_00316 0.54 -0.5
336,892 + MPMX20_00316 0.66 -1.4
336,932 - MPMX20_00316 0.72 +0.9
336,976 - MPMX20_00316 0.78 -0.0
337,012 - MPMX20_00316 0.84 -1.8
337,017 + MPMX20_00316 0.84 +0.5
337,033 + MPMX20_00316 0.87 -1.4
337,049 + MPMX20_00316 0.89 +0.0
337,049 + MPMX20_00316 0.89 +0.9
337,049 + MPMX20_00316 0.89 +0.7
337,049 + MPMX20_00316 0.89 +0.3
337,049 + MPMX20_00316 0.89 +2.7
337,057 - +0.3
337,094 + +0.1
337,102 - -1.6
337,118 + -1.1
337,118 + -1.5
337,118 + +0.6
337,126 - -0.8
337,129 - -1.4
337,156 - -1.6
337,279 - MPMX20_00317 0.19 -1.6
337,323 - MPMX20_00317 0.25 +0.7
337,323 - MPMX20_00317 0.25 -0.4
337,366 + MPMX20_00317 0.31 +2.3
337,368 - MPMX20_00317 0.31 -1.1
337,384 - MPMX20_00317 0.33 -1.4
337,457 + MPMX20_00317 0.43 +0.0
337,519 - MPMX20_00317 0.51 +0.3
337,519 - MPMX20_00317 0.51 +1.5
337,672 + MPMX20_00317 0.71 +0.9
337,729 + MPMX20_00317 0.79 -0.7
337,768 + MPMX20_00317 0.84 +1.2
337,795 - MPMX20_00317 0.88 -0.5
337,795 - MPMX20_00317 0.88 +0.2
337,801 - MPMX20_00317 0.88 +2.1
337,810 + MPMX20_00317 0.90 -1.1
337,811 - MPMX20_00317 0.90 +4.5
337,841 - +2.3
337,845 + +0.4
337,853 - -0.1
337,854 - +2.5
337,869 + -0.1
338,025 + MPMX20_00318 0.17 +0.2
338,071 + MPMX20_00318 0.22 +0.2
338,071 + MPMX20_00318 0.22 -0.4
338,079 - MPMX20_00318 0.23 -0.3
338,087 + MPMX20_00318 0.24 -0.6
338,119 - MPMX20_00318 0.28 +1.3
338,121 + MPMX20_00318 0.28 -1.0
338,144 + MPMX20_00318 0.31 +0.2
338,172 + MPMX20_00318 0.34 -0.5
338,215 + MPMX20_00318 0.39 -0.5
338,215 + MPMX20_00318 0.39 +1.3
338,222 - MPMX20_00318 0.40 -2.6
338,223 - MPMX20_00318 0.40 -0.6
338,223 - MPMX20_00318 0.40 -1.4
338,223 - MPMX20_00318 0.40 -0.7
338,223 - MPMX20_00318 0.40 +0.1
338,279 - MPMX20_00318 0.47 -0.4
338,279 - MPMX20_00318 0.47 -1.0
338,286 + MPMX20_00318 0.47 +0.8
338,286 + MPMX20_00318 0.47 +0.5
338,294 - MPMX20_00318 0.48 -0.5
338,294 - MPMX20_00318 0.48 -0.3
338,325 + MPMX20_00318 0.52 +0.4
338,333 - MPMX20_00318 0.53 +0.1
338,335 + MPMX20_00318 0.53 -1.2
338,338 - MPMX20_00318 0.54 -1.3
338,414 + MPMX20_00318 0.63 +0.1
338,430 + MPMX20_00318 0.64 -0.4
338,458 - MPMX20_00318 0.68 -0.3
338,458 - MPMX20_00318 0.68 +0.1
338,459 + MPMX20_00318 0.68 +0.4
338,705 + -0.4
338,751 + +0.3
338,796 + -0.4
338,823 + +0.0
338,846 - MPMX20_00319 0.12 -0.1

Or see this region's nucleotide sequence