Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00848

Experiment: 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_030

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00847 and MPMX20_00848 are separated by 154 nucleotidesMPMX20_00848 and MPMX20_00849 are separated by 90 nucleotidesMPMX20_00849 and MPMX20_00850 are separated by 111 nucleotides MPMX20_00847: MPMX20_00847 - Periplasmic serine endoprotease DegP, at 893,655 to 895,091 _00847 MPMX20_00848: MPMX20_00848 - Carbohydrate diacid regulator, at 895,246 to 896,403 _00848 MPMX20_00849: MPMX20_00849 - hypothetical protein, at 896,494 to 896,880 _00849 MPMX20_00850: MPMX20_00850 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 896,992 to 897,816 _00850 Position (kb) 895 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 894.271 kb on - strand, within MPMX20_00847at 894.299 kb on + strand, within MPMX20_00847at 894.307 kb on - strand, within MPMX20_00847at 894.373 kb on - strand, within MPMX20_00847at 894.393 kb on - strand, within MPMX20_00847at 894.411 kb on + strand, within MPMX20_00847at 894.419 kb on - strand, within MPMX20_00847at 894.572 kb on + strand, within MPMX20_00847at 894.572 kb on + strand, within MPMX20_00847at 894.580 kb on - strand, within MPMX20_00847at 894.580 kb on - strand, within MPMX20_00847at 894.580 kb on - strand, within MPMX20_00847at 894.669 kb on + strand, within MPMX20_00847at 894.703 kb on + strand, within MPMX20_00847at 894.796 kb on + strand, within MPMX20_00847at 894.817 kb on + strand, within MPMX20_00847at 894.845 kb on + strand, within MPMX20_00847at 894.887 kb on + strand, within MPMX20_00847at 894.887 kb on + strand, within MPMX20_00847at 894.890 kb on - strand, within MPMX20_00847at 894.890 kb on - strand, within MPMX20_00847at 894.895 kb on - strand, within MPMX20_00847at 894.908 kb on - strand, within MPMX20_00847at 894.918 kb on - strand, within MPMX20_00847at 894.923 kb on + strand, within MPMX20_00847at 895.224 kb on + strandat 895.229 kb on + strandat 895.229 kb on + strandat 895.229 kb on + strandat 895.237 kb on - strandat 895.237 kb on - strandat 895.248 kb on - strandat 895.289 kb on - strandat 895.289 kb on - strandat 895.410 kb on + strand, within MPMX20_00848at 895.453 kb on + strand, within MPMX20_00848at 895.455 kb on + strand, within MPMX20_00848at 895.461 kb on - strand, within MPMX20_00848at 895.566 kb on + strand, within MPMX20_00848at 895.574 kb on - strand, within MPMX20_00848at 895.584 kb on + strand, within MPMX20_00848at 895.587 kb on - strand, within MPMX20_00848at 895.589 kb on + strand, within MPMX20_00848at 895.626 kb on + strand, within MPMX20_00848at 895.626 kb on + strand, within MPMX20_00848at 895.626 kb on + strand, within MPMX20_00848at 895.626 kb on + strand, within MPMX20_00848at 895.670 kb on - strand, within MPMX20_00848at 895.677 kb on + strand, within MPMX20_00848at 895.680 kb on - strand, within MPMX20_00848at 895.682 kb on + strand, within MPMX20_00848at 895.682 kb on + strand, within MPMX20_00848at 895.682 kb on + strand, within MPMX20_00848at 895.682 kb on + strand, within MPMX20_00848at 895.690 kb on - strand, within MPMX20_00848at 895.690 kb on - strand, within MPMX20_00848at 895.690 kb on - strand, within MPMX20_00848at 895.842 kb on + strand, within MPMX20_00848at 895.878 kb on + strand, within MPMX20_00848at 895.878 kb on + strand, within MPMX20_00848at 895.934 kb on + strand, within MPMX20_00848at 896.016 kb on + strand, within MPMX20_00848at 896.052 kb on - strand, within MPMX20_00848at 896.184 kb on + strand, within MPMX20_00848at 896.184 kb on + strand, within MPMX20_00848at 896.192 kb on - strand, within MPMX20_00848at 896.192 kb on - strand, within MPMX20_00848at 896.232 kb on - strand, within MPMX20_00848at 896.232 kb on - strand, within MPMX20_00848at 896.254 kb on - strand, within MPMX20_00848at 896.284 kb on - strand, within MPMX20_00848at 896.340 kb on - strandat 896.341 kb on - strandat 896.375 kb on - strandat 896.416 kb on + strandat 896.422 kb on + strandat 896.426 kb on - strandat 896.427 kb on + strandat 896.427 kb on + strandat 896.430 kb on - strandat 896.435 kb on - strandat 896.459 kb on + strandat 896.542 kb on + strand, within MPMX20_00849at 896.581 kb on + strand, within MPMX20_00849at 896.655 kb on + strand, within MPMX20_00849at 896.655 kb on + strand, within MPMX20_00849at 896.658 kb on - strand, within MPMX20_00849at 896.663 kb on - strand, within MPMX20_00849at 896.663 kb on - strand, within MPMX20_00849at 896.663 kb on - strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.691 kb on + strand, within MPMX20_00849at 896.699 kb on - strand, within MPMX20_00849at 896.699 kb on - strand, within MPMX20_00849at 896.699 kb on - strand, within MPMX20_00849at 896.699 kb on - strand, within MPMX20_00849at 896.714 kb on + strand, within MPMX20_00849at 896.714 kb on + strand, within MPMX20_00849at 896.714 kb on + strand, within MPMX20_00849at 896.722 kb on - strand, within MPMX20_00849at 896.732 kb on + strand, within MPMX20_00849at 896.765 kb on + strand, within MPMX20_00849at 896.773 kb on - strand, within MPMX20_00849at 896.807 kb on - strand, within MPMX20_00849at 896.828 kb on - strand, within MPMX20_00849at 896.851 kb on - strandat 896.853 kb on + strandat 896.853 kb on + strandat 896.968 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Chryseobacterium gleum TBS_030
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894,271 - MPMX20_00847 0.43 +0.3
894,299 + MPMX20_00847 0.45 -1.4
894,307 - MPMX20_00847 0.45 +3.0
894,373 - MPMX20_00847 0.50 -1.0
894,393 - MPMX20_00847 0.51 +0.3
894,411 + MPMX20_00847 0.53 +2.0
894,419 - MPMX20_00847 0.53 +0.1
894,572 + MPMX20_00847 0.64 +1.6
894,572 + MPMX20_00847 0.64 -2.0
894,580 - MPMX20_00847 0.64 +0.2
894,580 - MPMX20_00847 0.64 +0.4
894,580 - MPMX20_00847 0.64 +1.0
894,669 + MPMX20_00847 0.71 +0.2
894,703 + MPMX20_00847 0.73 -0.2
894,796 + MPMX20_00847 0.79 +0.6
894,817 + MPMX20_00847 0.81 -0.0
894,845 + MPMX20_00847 0.83 +0.2
894,887 + MPMX20_00847 0.86 +1.2
894,887 + MPMX20_00847 0.86 -1.6
894,890 - MPMX20_00847 0.86 +0.2
894,890 - MPMX20_00847 0.86 -0.9
894,895 - MPMX20_00847 0.86 -0.5
894,908 - MPMX20_00847 0.87 -0.1
894,918 - MPMX20_00847 0.88 +2.0
894,923 + MPMX20_00847 0.88 -1.0
895,224 + +0.8
895,229 + -1.8
895,229 + -1.0
895,229 + +0.0
895,237 - +0.0
895,237 - -1.3
895,248 - -0.5
895,289 - -0.5
895,289 - +0.2
895,410 + MPMX20_00848 0.14 +0.0
895,453 + MPMX20_00848 0.18 -0.3
895,455 + MPMX20_00848 0.18 +0.4
895,461 - MPMX20_00848 0.19 +0.5
895,566 + MPMX20_00848 0.28 -1.1
895,574 - MPMX20_00848 0.28 -0.9
895,584 + MPMX20_00848 0.29 -1.2
895,587 - MPMX20_00848 0.29 +0.3
895,589 + MPMX20_00848 0.30 +0.3
895,626 + MPMX20_00848 0.33 -1.2
895,626 + MPMX20_00848 0.33 +1.2
895,626 + MPMX20_00848 0.33 -0.8
895,626 + MPMX20_00848 0.33 -0.3
895,670 - MPMX20_00848 0.37 -0.9
895,677 + MPMX20_00848 0.37 -1.2
895,680 - MPMX20_00848 0.37 -1.0
895,682 + MPMX20_00848 0.38 -0.3
895,682 + MPMX20_00848 0.38 -1.5
895,682 + MPMX20_00848 0.38 -0.8
895,682 + MPMX20_00848 0.38 -0.9
895,690 - MPMX20_00848 0.38 -1.0
895,690 - MPMX20_00848 0.38 -0.4
895,690 - MPMX20_00848 0.38 +0.2
895,842 + MPMX20_00848 0.51 -0.7
895,878 + MPMX20_00848 0.55 -2.7
895,878 + MPMX20_00848 0.55 +0.0
895,934 + MPMX20_00848 0.59 +0.4
896,016 + MPMX20_00848 0.66 -0.3
896,052 - MPMX20_00848 0.70 +0.7
896,184 + MPMX20_00848 0.81 +0.4
896,184 + MPMX20_00848 0.81 +0.6
896,192 - MPMX20_00848 0.82 -1.1
896,192 - MPMX20_00848 0.82 +0.9
896,232 - MPMX20_00848 0.85 -0.4
896,232 - MPMX20_00848 0.85 -1.1
896,254 - MPMX20_00848 0.87 -1.0
896,284 - MPMX20_00848 0.90 -0.7
896,340 - -0.3
896,341 - -0.3
896,375 - +0.0
896,416 + +0.1
896,422 + +1.0
896,426 - -0.3
896,427 + -1.2
896,427 + -0.6
896,430 - -0.4
896,435 - -1.5
896,459 + +0.6
896,542 + MPMX20_00849 0.12 +0.3
896,581 + MPMX20_00849 0.22 -1.6
896,655 + MPMX20_00849 0.42 -2.2
896,655 + MPMX20_00849 0.42 +0.2
896,658 - MPMX20_00849 0.42 -0.3
896,663 - MPMX20_00849 0.44 +0.5
896,663 - MPMX20_00849 0.44 -0.2
896,663 - MPMX20_00849 0.44 -2.7
896,691 + MPMX20_00849 0.51 +0.0
896,691 + MPMX20_00849 0.51 +0.4
896,691 + MPMX20_00849 0.51 -0.5
896,691 + MPMX20_00849 0.51 -0.6
896,691 + MPMX20_00849 0.51 +0.8
896,691 + MPMX20_00849 0.51 -0.8
896,699 - MPMX20_00849 0.53 -0.7
896,699 - MPMX20_00849 0.53 -0.6
896,699 - MPMX20_00849 0.53 +0.3
896,699 - MPMX20_00849 0.53 -0.9
896,714 + MPMX20_00849 0.57 +0.1
896,714 + MPMX20_00849 0.57 -0.6
896,714 + MPMX20_00849 0.57 +0.2
896,722 - MPMX20_00849 0.59 +1.6
896,732 + MPMX20_00849 0.61 +3.0
896,765 + MPMX20_00849 0.70 +0.6
896,773 - MPMX20_00849 0.72 -0.6
896,807 - MPMX20_00849 0.81 +0.9
896,828 - MPMX20_00849 0.86 -1.6
896,851 - +0.7
896,853 + -2.9
896,853 + -0.4
896,968 + -0.3

Or see this region's nucleotide sequence