Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03965

Experiment: 1X LB plate, 1:1 coculture with Pseudomonas lini TBS_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03963 and MPMX20_03964 overlap by 4 nucleotidesMPMX20_03964 and MPMX20_03965 are separated by 109 nucleotidesMPMX20_03965 and MPMX20_03966 overlap by 38 nucleotidesMPMX20_03966 and MPMX20_03967 overlap by 14 nucleotidesMPMX20_03967 and MPMX20_03968 overlap by 22 nucleotides MPMX20_03963: MPMX20_03963 - hypothetical protein, at 4,163,321 to 4,163,671 _03963 MPMX20_03964: MPMX20_03964 - hypothetical protein, at 4,163,668 to 4,164,309 _03964 MPMX20_03965: MPMX20_03965 - hypothetical protein, at 4,164,419 to 4,164,886 _03965 MPMX20_03966: MPMX20_03966 - hypothetical protein, at 4,164,849 to 4,165,007 _03966 MPMX20_03967: MPMX20_03967 - hypothetical protein, at 4,164,994 to 4,165,425 _03967 MPMX20_03968: MPMX20_03968 - hypothetical protein, at 4,165,404 to 4,165,913 _03968 Position (kb) 4164 4165Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4163.453 kb on + strand, within MPMX20_03963at 4163.497 kb on + strand, within MPMX20_03963at 4163.497 kb on + strand, within MPMX20_03963at 4163.505 kb on - strand, within MPMX20_03963at 4163.541 kb on - strand, within MPMX20_03963at 4163.580 kb on + strand, within MPMX20_03963at 4163.620 kb on + strand, within MPMX20_03963at 4163.660 kb on - strandat 4163.673 kb on - strandat 4163.673 kb on - strandat 4163.675 kb on - strandat 4163.679 kb on + strandat 4163.686 kb on - strandat 4163.687 kb on - strandat 4163.718 kb on - strandat 4163.794 kb on + strand, within MPMX20_03964at 4163.794 kb on + strand, within MPMX20_03964at 4163.794 kb on + strand, within MPMX20_03964at 4163.800 kb on - strand, within MPMX20_03964at 4163.802 kb on - strand, within MPMX20_03964at 4163.802 kb on - strand, within MPMX20_03964at 4163.810 kb on - strand, within MPMX20_03964at 4163.838 kb on - strand, within MPMX20_03964at 4163.841 kb on + strand, within MPMX20_03964at 4163.850 kb on + strand, within MPMX20_03964at 4163.851 kb on + strand, within MPMX20_03964at 4163.859 kb on - strand, within MPMX20_03964at 4163.895 kb on + strand, within MPMX20_03964at 4163.926 kb on - strand, within MPMX20_03964at 4163.941 kb on + strand, within MPMX20_03964at 4164.015 kb on + strand, within MPMX20_03964at 4164.077 kb on + strand, within MPMX20_03964at 4164.119 kb on + strand, within MPMX20_03964at 4164.127 kb on - strand, within MPMX20_03964at 4164.185 kb on + strand, within MPMX20_03964at 4164.194 kb on + strand, within MPMX20_03964at 4164.202 kb on - strand, within MPMX20_03964at 4164.204 kb on + strand, within MPMX20_03964at 4164.212 kb on - strand, within MPMX20_03964at 4164.226 kb on - strand, within MPMX20_03964at 4164.229 kb on - strand, within MPMX20_03964at 4164.288 kb on + strandat 4164.362 kb on - strandat 4164.418 kb on + strandat 4164.440 kb on - strandat 4164.442 kb on + strandat 4164.467 kb on - strand, within MPMX20_03965at 4164.494 kb on - strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.565 kb on + strand, within MPMX20_03965at 4164.567 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.573 kb on - strand, within MPMX20_03965at 4164.685 kb on - strand, within MPMX20_03965at 4164.685 kb on - strand, within MPMX20_03965at 4164.708 kb on - strand, within MPMX20_03965at 4164.763 kb on + strand, within MPMX20_03965at 4164.768 kb on + strand, within MPMX20_03965at 4164.836 kb on - strand, within MPMX20_03965at 4164.889 kb on + strand, within MPMX20_03966at 4164.897 kb on - strand, within MPMX20_03966at 4164.912 kb on + strand, within MPMX20_03966at 4164.941 kb on + strand, within MPMX20_03966at 4164.947 kb on + strand, within MPMX20_03966at 4164.947 kb on + strand, within MPMX20_03966at 4164.962 kb on + strand, within MPMX20_03966at 4165.023 kb on - strandat 4165.091 kb on + strand, within MPMX20_03967at 4165.091 kb on + strand, within MPMX20_03967at 4165.091 kb on + strand, within MPMX20_03967at 4165.106 kb on + strand, within MPMX20_03967at 4165.115 kb on - strand, within MPMX20_03967at 4165.115 kb on - strand, within MPMX20_03967at 4165.145 kb on - strand, within MPMX20_03967at 4165.209 kb on + strand, within MPMX20_03967at 4165.216 kb on - strand, within MPMX20_03967at 4165.338 kb on - strand, within MPMX20_03967at 4165.364 kb on + strand, within MPMX20_03967at 4165.372 kb on - strand, within MPMX20_03967at 4165.431 kb on - strandat 4165.431 kb on - strandat 4165.441 kb on + strandat 4165.481 kb on + strand, within MPMX20_03968at 4165.482 kb on - strand, within MPMX20_03968at 4165.482 kb on - strand, within MPMX20_03968at 4165.487 kb on - strand, within MPMX20_03968at 4165.487 kb on - strand, within MPMX20_03968at 4165.523 kb on + strand, within MPMX20_03968at 4165.523 kb on + strand, within MPMX20_03968at 4165.530 kb on - strand, within MPMX20_03968at 4165.591 kb on - strand, within MPMX20_03968at 4165.631 kb on - strand, within MPMX20_03968at 4165.680 kb on + strand, within MPMX20_03968at 4165.690 kb on + strand, within MPMX20_03968at 4165.737 kb on + strand, within MPMX20_03968at 4165.739 kb on - strand, within MPMX20_03968at 4165.800 kb on - strand, within MPMX20_03968at 4165.828 kb on - strand, within MPMX20_03968at 4165.828 kb on - strand, within MPMX20_03968at 4165.831 kb on + strand, within MPMX20_03968at 4165.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Pseudomonas lini TBS_031
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4,163,453 + MPMX20_03963 0.38 +1.5
4,163,497 + MPMX20_03963 0.50 -1.2
4,163,497 + MPMX20_03963 0.50 +0.1
4,163,505 - MPMX20_03963 0.52 +0.6
4,163,541 - MPMX20_03963 0.63 -0.0
4,163,580 + MPMX20_03963 0.74 -1.8
4,163,620 + MPMX20_03963 0.85 -0.6
4,163,660 - +1.1
4,163,673 - +1.4
4,163,673 - -0.1
4,163,675 - -1.2
4,163,679 + +2.9
4,163,686 - -0.6
4,163,687 - +0.3
4,163,718 - -0.2
4,163,794 + MPMX20_03964 0.20 -1.9
4,163,794 + MPMX20_03964 0.20 +0.1
4,163,794 + MPMX20_03964 0.20 -2.5
4,163,800 - MPMX20_03964 0.21 -0.4
4,163,802 - MPMX20_03964 0.21 +1.4
4,163,802 - MPMX20_03964 0.21 +2.3
4,163,810 - MPMX20_03964 0.22 +0.3
4,163,838 - MPMX20_03964 0.26 -0.6
4,163,841 + MPMX20_03964 0.27 -0.4
4,163,850 + MPMX20_03964 0.28 -1.3
4,163,851 + MPMX20_03964 0.29 -0.2
4,163,859 - MPMX20_03964 0.30 -0.7
4,163,895 + MPMX20_03964 0.35 -0.8
4,163,926 - MPMX20_03964 0.40 -0.2
4,163,941 + MPMX20_03964 0.43 +0.1
4,164,015 + MPMX20_03964 0.54 +0.8
4,164,077 + MPMX20_03964 0.64 +0.0
4,164,119 + MPMX20_03964 0.70 +1.0
4,164,127 - MPMX20_03964 0.71 -0.8
4,164,185 + MPMX20_03964 0.81 -0.1
4,164,194 + MPMX20_03964 0.82 -0.6
4,164,202 - MPMX20_03964 0.83 -0.9
4,164,204 + MPMX20_03964 0.83 +2.4
4,164,212 - MPMX20_03964 0.85 -0.2
4,164,226 - MPMX20_03964 0.87 -1.7
4,164,229 - MPMX20_03964 0.87 -0.4
4,164,288 + -0.5
4,164,362 - -0.4
4,164,418 + -2.2
4,164,440 - +0.8
4,164,442 + -0.4
4,164,467 - MPMX20_03965 0.10 -0.2
4,164,494 - MPMX20_03965 0.16 -0.2
4,164,565 + MPMX20_03965 0.31 -0.4
4,164,565 + MPMX20_03965 0.31 -1.5
4,164,565 + MPMX20_03965 0.31 -0.9
4,164,567 - MPMX20_03965 0.32 -1.7
4,164,573 - MPMX20_03965 0.33 -1.0
4,164,573 - MPMX20_03965 0.33 -2.0
4,164,573 - MPMX20_03965 0.33 -1.5
4,164,573 - MPMX20_03965 0.33 -2.0
4,164,685 - MPMX20_03965 0.57 -0.4
4,164,685 - MPMX20_03965 0.57 -0.6
4,164,708 - MPMX20_03965 0.62 -1.0
4,164,763 + MPMX20_03965 0.74 -0.5
4,164,768 + MPMX20_03965 0.75 +0.4
4,164,836 - MPMX20_03965 0.89 -0.7
4,164,889 + MPMX20_03966 0.25 -1.2
4,164,897 - MPMX20_03966 0.30 -0.6
4,164,912 + MPMX20_03966 0.40 +0.4
4,164,941 + MPMX20_03966 0.58 -1.0
4,164,947 + MPMX20_03966 0.62 +0.3
4,164,947 + MPMX20_03966 0.62 -0.2
4,164,962 + MPMX20_03966 0.71 -0.2
4,165,023 - -0.7
4,165,091 + MPMX20_03967 0.22 -1.0
4,165,091 + MPMX20_03967 0.22 +0.3
4,165,091 + MPMX20_03967 0.22 +0.7
4,165,106 + MPMX20_03967 0.26 +0.4
4,165,115 - MPMX20_03967 0.28 +0.4
4,165,115 - MPMX20_03967 0.28 -0.9
4,165,145 - MPMX20_03967 0.35 +1.6
4,165,209 + MPMX20_03967 0.50 +1.4
4,165,216 - MPMX20_03967 0.51 +0.3
4,165,338 - MPMX20_03967 0.80 -1.0
4,165,364 + MPMX20_03967 0.86 -1.2
4,165,372 - MPMX20_03967 0.88 +1.2
4,165,431 - -0.2
4,165,431 - -0.7
4,165,441 + -0.7
4,165,481 + MPMX20_03968 0.15 +0.5
4,165,482 - MPMX20_03968 0.15 -0.0
4,165,482 - MPMX20_03968 0.15 -0.0
4,165,487 - MPMX20_03968 0.16 +0.3
4,165,487 - MPMX20_03968 0.16 -0.2
4,165,523 + MPMX20_03968 0.23 +2.4
4,165,523 + MPMX20_03968 0.23 -0.8
4,165,530 - MPMX20_03968 0.25 -1.3
4,165,591 - MPMX20_03968 0.37 +0.6
4,165,631 - MPMX20_03968 0.45 -1.0
4,165,680 + MPMX20_03968 0.54 -0.2
4,165,690 + MPMX20_03968 0.56 -0.3
4,165,737 + MPMX20_03968 0.65 +1.1
4,165,739 - MPMX20_03968 0.66 -1.5
4,165,800 - MPMX20_03968 0.78 +0.5
4,165,828 - MPMX20_03968 0.83 +0.2
4,165,828 - MPMX20_03968 0.83 -0.2
4,165,831 + MPMX20_03968 0.84 +0.1
4,165,872 - -0.7

Or see this region's nucleotide sequence