Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00392

Experiment: 1X LB plate, 1:1 coculture with Pseudomonas lini TBS_031

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00389 and MPMX20_00390 are separated by 40 nucleotidesMPMX20_00390 and MPMX20_00391 overlap by 4 nucleotidesMPMX20_00391 and MPMX20_00392 overlap by 4 nucleotidesMPMX20_00392 and MPMX20_00393 are separated by 119 nucleotidesMPMX20_00393 and MPMX20_00394 overlap by 4 nucleotides MPMX20_00389: MPMX20_00389 - hypothetical protein, at 407,054 to 407,440 _00389 MPMX20_00390: MPMX20_00390 - hypothetical protein, at 407,481 to 407,897 _00390 MPMX20_00391: MPMX20_00391 - hypothetical protein, at 407,894 to 408,397 _00391 MPMX20_00392: MPMX20_00392 - hypothetical protein, at 408,394 to 408,798 _00392 MPMX20_00393: MPMX20_00393 - hypothetical protein, at 408,918 to 409,469 _00393 MPMX20_00394: MPMX20_00394 - hypothetical protein, at 409,466 to 410,035 _00394 Position (kb) 408 409Strain fitness (log2 ratio) -2 -1 0 1 2 3at 407.402 kb on - strandat 407.418 kb on - strandat 407.433 kb on - strandat 407.472 kb on - strandat 407.579 kb on - strand, within MPMX20_00390at 407.584 kb on - strand, within MPMX20_00390at 407.595 kb on - strand, within MPMX20_00390at 407.627 kb on - strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.746 kb on + strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.754 kb on - strand, within MPMX20_00390at 407.857 kb on + strandat 407.926 kb on + strandat 407.945 kb on + strand, within MPMX20_00391at 407.946 kb on + strand, within MPMX20_00391at 407.964 kb on + strand, within MPMX20_00391at 407.989 kb on - strand, within MPMX20_00391at 408.162 kb on + strand, within MPMX20_00391at 408.171 kb on + strand, within MPMX20_00391at 408.191 kb on - strand, within MPMX20_00391at 408.197 kb on - strand, within MPMX20_00391at 408.233 kb on - strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.249 kb on + strand, within MPMX20_00391at 408.361 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.366 kb on + strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.374 kb on - strandat 408.444 kb on + strand, within MPMX20_00392at 408.468 kb on + strand, within MPMX20_00392at 408.492 kb on + strand, within MPMX20_00392at 408.515 kb on - strand, within MPMX20_00392at 408.534 kb on - strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.560 kb on + strand, within MPMX20_00392at 408.564 kb on + strand, within MPMX20_00392at 408.711 kb on - strand, within MPMX20_00392at 408.731 kb on - strand, within MPMX20_00392at 408.743 kb on + strand, within MPMX20_00392at 408.794 kb on + strandat 408.806 kb on + strandat 408.806 kb on + strandat 408.814 kb on - strandat 408.868 kb on - strandat 408.916 kb on - strandat 408.916 kb on - strandat 408.925 kb on - strandat 409.032 kb on + strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.063 kb on - strand, within MPMX20_00393at 409.064 kb on - strand, within MPMX20_00393at 409.074 kb on + strand, within MPMX20_00393at 409.082 kb on - strand, within MPMX20_00393at 409.138 kb on - strand, within MPMX20_00393at 409.169 kb on + strand, within MPMX20_00393at 409.265 kb on - strand, within MPMX20_00393at 409.274 kb on + strand, within MPMX20_00393at 409.276 kb on + strand, within MPMX20_00393at 409.329 kb on + strand, within MPMX20_00393at 409.409 kb on - strand, within MPMX20_00393at 409.485 kb on + strandat 409.493 kb on - strandat 409.498 kb on - strandat 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.564 kb on + strand, within MPMX20_00394at 409.576 kb on + strand, within MPMX20_00394at 409.611 kb on + strand, within MPMX20_00394at 409.617 kb on - strand, within MPMX20_00394at 409.642 kb on - strand, within MPMX20_00394at 409.652 kb on - strand, within MPMX20_00394at 409.691 kb on + strand, within MPMX20_00394

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Pseudomonas lini TBS_031
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407,402 - +0.4
407,418 - +0.3
407,433 - +0.4
407,472 - -0.1
407,579 - MPMX20_00390 0.24 -0.2
407,584 - MPMX20_00390 0.25 -1.2
407,595 - MPMX20_00390 0.27 -0.2
407,627 - MPMX20_00390 0.35 -0.3
407,746 + MPMX20_00390 0.64 -0.5
407,746 + MPMX20_00390 0.64 +0.8
407,754 - MPMX20_00390 0.65 +2.4
407,754 - MPMX20_00390 0.65 -0.7
407,754 - MPMX20_00390 0.65 +0.8
407,754 - MPMX20_00390 0.65 -0.5
407,857 + +0.9
407,926 + +2.8
407,945 + MPMX20_00391 0.10 -1.0
407,946 + MPMX20_00391 0.10 -0.5
407,964 + MPMX20_00391 0.14 -2.0
407,989 - MPMX20_00391 0.19 -1.0
408,162 + MPMX20_00391 0.53 -1.5
408,171 + MPMX20_00391 0.55 +0.1
408,191 - MPMX20_00391 0.59 +0.2
408,197 - MPMX20_00391 0.60 -1.6
408,233 - MPMX20_00391 0.67 -1.0
408,249 + MPMX20_00391 0.70 +0.6
408,249 + MPMX20_00391 0.70 +0.6
408,361 + -0.7
408,366 + -0.1
408,366 + +0.7
408,366 + -1.1
408,374 - +0.5
408,374 - +0.1
408,374 - -0.2
408,374 - -0.5
408,444 + MPMX20_00392 0.12 -0.2
408,468 + MPMX20_00392 0.18 -1.1
408,492 + MPMX20_00392 0.24 +0.1
408,515 - MPMX20_00392 0.30 -2.3
408,534 - MPMX20_00392 0.35 -2.3
408,560 + MPMX20_00392 0.41 -1.3
408,560 + MPMX20_00392 0.41 -1.0
408,564 + MPMX20_00392 0.42 -0.7
408,711 - MPMX20_00392 0.78 +1.9
408,731 - MPMX20_00392 0.83 -2.3
408,743 + MPMX20_00392 0.86 +0.4
408,794 + +0.1
408,806 + -0.8
408,806 + -0.4
408,814 - +1.2
408,868 - +0.6
408,916 - -0.3
408,916 - -0.9
408,925 - +1.4
409,032 + MPMX20_00393 0.21 +0.8
409,063 - MPMX20_00393 0.26 -0.2
409,063 - MPMX20_00393 0.26 -1.8
409,064 - MPMX20_00393 0.26 +0.5
409,074 + MPMX20_00393 0.28 -1.4
409,082 - MPMX20_00393 0.30 +1.1
409,138 - MPMX20_00393 0.40 +0.0
409,169 + MPMX20_00393 0.45 -0.1
409,265 - MPMX20_00393 0.63 -1.3
409,274 + MPMX20_00393 0.64 -1.0
409,276 + MPMX20_00393 0.65 -1.4
409,329 + MPMX20_00393 0.74 -0.2
409,409 - MPMX20_00393 0.89 -0.3
409,485 + -2.2
409,493 - -0.2
409,498 - +1.1
409,564 + MPMX20_00394 0.17 -0.4
409,564 + MPMX20_00394 0.17 -0.1
409,564 + MPMX20_00394 0.17 -1.0
409,576 + MPMX20_00394 0.19 -0.2
409,611 + MPMX20_00394 0.25 -0.4
409,617 - MPMX20_00394 0.26 +0.9
409,642 - MPMX20_00394 0.31 -0.4
409,652 - MPMX20_00394 0.33 -0.8
409,691 + MPMX20_00394 0.39 +0.8

Or see this region's nucleotide sequence