Experiment: 0.1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04620 and MPMX20_04621 are separated by 222 nucleotides MPMX20_04621 and MPMX20_04622 overlap by 7 nucleotides
MPMX20_04620: MPMX20_04620 - Low affinity potassium transport system protein kup, at 4,838,123 to 4,839,991
_04620
MPMX20_04621: MPMX20_04621 - ATPase RavA, at 4,840,214 to 4,841,710
_04621
MPMX20_04622: MPMX20_04622 - Protein ViaA, at 4,841,704 to 4,843,155
_04622
Position (kb)
4840
4841
4842 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4839.226 kb on - strand, within MPMX20_04620 at 4839.271 kb on - strand, within MPMX20_04620 at 4839.392 kb on - strand, within MPMX20_04620 at 4839.457 kb on + strand, within MPMX20_04620 at 4839.462 kb on + strand, within MPMX20_04620 at 4839.497 kb on + strand, within MPMX20_04620 at 4839.510 kb on - strand, within MPMX20_04620 at 4839.541 kb on + strand, within MPMX20_04620 at 4839.541 kb on + strand, within MPMX20_04620 at 4839.643 kb on - strand, within MPMX20_04620 at 4839.708 kb on + strand, within MPMX20_04620 at 4839.729 kb on - strand, within MPMX20_04620 at 4839.847 kb on - strand at 4839.854 kb on + strand at 4839.914 kb on + strand at 4839.922 kb on - strand at 4839.931 kb on + strand at 4839.946 kb on + strand at 4839.952 kb on + strand at 4839.992 kb on - strand at 4840.015 kb on + strand at 4840.021 kb on - strand at 4840.033 kb on - strand at 4840.091 kb on - strand at 4840.099 kb on + strand at 4840.099 kb on + strand at 4840.099 kb on + strand at 4840.099 kb on + strand at 4840.107 kb on - strand at 4840.131 kb on + strand at 4840.148 kb on - strand at 4840.160 kb on + strand at 4840.160 kb on + strand at 4840.192 kb on + strand at 4840.226 kb on + strand at 4840.234 kb on - strand at 4840.260 kb on - strand at 4840.296 kb on - strand at 4840.304 kb on - strand at 4840.304 kb on - strand at 4840.319 kb on + strand at 4840.319 kb on + strand at 4840.327 kb on - strand at 4840.327 kb on - strand at 4840.327 kb on - strand at 4840.327 kb on - strand at 4840.335 kb on + strand at 4840.337 kb on - strand at 4840.337 kb on - strand at 4840.345 kb on + strand at 4840.352 kb on + strand at 4840.511 kb on - strand, within MPMX20_04621 at 4840.515 kb on - strand, within MPMX20_04621 at 4840.515 kb on - strand, within MPMX20_04621 at 4840.558 kb on + strand, within MPMX20_04621 at 4840.558 kb on + strand, within MPMX20_04621 at 4840.580 kb on + strand, within MPMX20_04621 at 4840.594 kb on + strand, within MPMX20_04621 at 4840.684 kb on + strand, within MPMX20_04621 at 4840.720 kb on - strand, within MPMX20_04621 at 4840.720 kb on - strand, within MPMX20_04621 at 4840.722 kb on - strand, within MPMX20_04621 at 4840.754 kb on - strand, within MPMX20_04621 at 4840.759 kb on - strand, within MPMX20_04621 at 4840.791 kb on + strand, within MPMX20_04621 at 4840.844 kb on - strand, within MPMX20_04621 at 4840.855 kb on + strand, within MPMX20_04621 at 4840.855 kb on - strand, within MPMX20_04621 at 4840.906 kb on + strand, within MPMX20_04621 at 4840.959 kb on - strand, within MPMX20_04621 at 4840.994 kb on - strand, within MPMX20_04621 at 4840.996 kb on + strand, within MPMX20_04621 at 4841.009 kb on - strand, within MPMX20_04621 at 4841.011 kb on - strand, within MPMX20_04621 at 4841.011 kb on - strand, within MPMX20_04621 at 4841.016 kb on - strand, within MPMX20_04621 at 4841.048 kb on - strand, within MPMX20_04621 at 4841.082 kb on + strand, within MPMX20_04621 at 4841.128 kb on + strand, within MPMX20_04621 at 4841.131 kb on - strand, within MPMX20_04621 at 4841.136 kb on - strand, within MPMX20_04621 at 4841.155 kb on - strand, within MPMX20_04621 at 4841.158 kb on + strand, within MPMX20_04621 at 4841.166 kb on - strand, within MPMX20_04621 at 4841.166 kb on - strand, within MPMX20_04621 at 4841.188 kb on + strand, within MPMX20_04621 at 4841.284 kb on + strand, within MPMX20_04621 at 4841.289 kb on + strand, within MPMX20_04621 at 4841.289 kb on + strand, within MPMX20_04621 at 4841.289 kb on + strand, within MPMX20_04621 at 4841.289 kb on + strand, within MPMX20_04621 at 4841.303 kb on - strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.319 kb on + strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.327 kb on - strand, within MPMX20_04621 at 4841.347 kb on + strand, within MPMX20_04621 at 4841.353 kb on - strand, within MPMX20_04621 at 4841.353 kb on - strand, within MPMX20_04621 at 4841.445 kb on + strand, within MPMX20_04621 at 4841.523 kb on - strand, within MPMX20_04621 at 4841.533 kb on - strand, within MPMX20_04621 at 4841.572 kb on + strand at 4841.580 kb on - strand at 4841.643 kb on + strand at 4841.661 kb on - strand at 4841.715 kb on + strand at 4841.726 kb on + strand at 4841.770 kb on + strand at 4841.779 kb on + strand at 4841.779 kb on + strand at 4841.779 kb on + strand at 4841.930 kb on + strand, within MPMX20_04622 at 4841.930 kb on + strand, within MPMX20_04622 at 4841.930 kb on + strand, within MPMX20_04622 at 4841.930 kb on + strand, within MPMX20_04622 at 4841.930 kb on + strand, within MPMX20_04622 at 4841.938 kb on - strand, within MPMX20_04622 at 4841.938 kb on - strand, within MPMX20_04622 at 4841.986 kb on + strand, within MPMX20_04622 at 4841.987 kb on + strand, within MPMX20_04622 at 4842.073 kb on + strand, within MPMX20_04622 at 4842.122 kb on + strand, within MPMX20_04622 at 4842.122 kb on + strand, within MPMX20_04622 at 4842.155 kb on + strand, within MPMX20_04622 at 4842.163 kb on + strand, within MPMX20_04622 at 4842.168 kb on + strand, within MPMX20_04622 at 4842.186 kb on - strand, within MPMX20_04622 at 4842.186 kb on - strand, within MPMX20_04622 at 4842.201 kb on - strand, within MPMX20_04622 at 4842.220 kb on - strand, within MPMX20_04622 at 4842.249 kb on + strand, within MPMX20_04622 at 4842.329 kb on + strand, within MPMX20_04622 at 4842.357 kb on + strand, within MPMX20_04622 at 4842.373 kb on - strand, within MPMX20_04622 at 4842.373 kb on - strand, within MPMX20_04622 at 4842.446 kb on + strand, within MPMX20_04622 at 4842.519 kb on + strand, within MPMX20_04622 at 4842.523 kb on - strand, within MPMX20_04622 at 4842.570 kb on + strand, within MPMX20_04622 at 4842.694 kb on - strand, within MPMX20_04622 at 4842.703 kb on - strand, within MPMX20_04622 at 4842.704 kb on + strand, within MPMX20_04622
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 4,839,226 - MPMX20_04620 0.59 -0.9 4,839,271 - MPMX20_04620 0.61 -0.5 4,839,392 - MPMX20_04620 0.68 -0.4 4,839,457 + MPMX20_04620 0.71 +0.8 4,839,462 + MPMX20_04620 0.72 -2.0 4,839,497 + MPMX20_04620 0.74 -0.2 4,839,510 - MPMX20_04620 0.74 +1.4 4,839,541 + MPMX20_04620 0.76 -0.9 4,839,541 + MPMX20_04620 0.76 +2.3 4,839,643 - MPMX20_04620 0.81 -0.3 4,839,708 + MPMX20_04620 0.85 -0.3 4,839,729 - MPMX20_04620 0.86 -0.3 4,839,847 - +0.7 4,839,854 + +0.3 4,839,914 + -0.6 4,839,922 - -1.5 4,839,931 + +2.7 4,839,946 + -1.1 4,839,952 + -0.3 4,839,992 - +0.1 4,840,015 + -0.9 4,840,021 - +0.1 4,840,033 - -1.3 4,840,091 - +1.8 4,840,099 + +3.7 4,840,099 + +0.5 4,840,099 + -0.5 4,840,099 + +0.7 4,840,107 - -0.2 4,840,131 + +0.3 4,840,148 - +0.4 4,840,160 + -0.0 4,840,160 + -0.6 4,840,192 + +2.2 4,840,226 + +1.7 4,840,234 - +0.1 4,840,260 - -0.3 4,840,296 - +0.7 4,840,304 - +0.2 4,840,304 - +1.1 4,840,319 + -0.8 4,840,319 + +0.3 4,840,327 - -0.4 4,840,327 - -1.0 4,840,327 - +1.1 4,840,327 - -0.4 4,840,335 + +0.1 4,840,337 - -0.6 4,840,337 - -0.8 4,840,345 + -0.5 4,840,352 + +1.5 4,840,511 - MPMX20_04621 0.20 +0.2 4,840,515 - MPMX20_04621 0.20 +0.2 4,840,515 - MPMX20_04621 0.20 -0.9 4,840,558 + MPMX20_04621 0.23 +1.7 4,840,558 + MPMX20_04621 0.23 -1.1 4,840,580 + MPMX20_04621 0.24 +1.0 4,840,594 + MPMX20_04621 0.25 -1.0 4,840,684 + MPMX20_04621 0.31 -1.3 4,840,720 - MPMX20_04621 0.34 -0.3 4,840,720 - MPMX20_04621 0.34 +1.1 4,840,722 - MPMX20_04621 0.34 +0.7 4,840,754 - MPMX20_04621 0.36 +0.1 4,840,759 - MPMX20_04621 0.36 +0.6 4,840,791 + MPMX20_04621 0.39 +0.7 4,840,844 - MPMX20_04621 0.42 +2.2 4,840,855 + MPMX20_04621 0.43 -0.5 4,840,855 - MPMX20_04621 0.43 +1.3 4,840,906 + MPMX20_04621 0.46 +0.1 4,840,959 - MPMX20_04621 0.50 -1.3 4,840,994 - MPMX20_04621 0.52 -1.4 4,840,996 + MPMX20_04621 0.52 +1.7 4,841,009 - MPMX20_04621 0.53 +0.5 4,841,011 - MPMX20_04621 0.53 -0.2 4,841,011 - MPMX20_04621 0.53 -0.3 4,841,016 - MPMX20_04621 0.54 +0.3 4,841,048 - MPMX20_04621 0.56 +1.1 4,841,082 + MPMX20_04621 0.58 +2.0 4,841,128 + MPMX20_04621 0.61 +0.5 4,841,131 - MPMX20_04621 0.61 -1.6 4,841,136 - MPMX20_04621 0.62 +0.8 4,841,155 - MPMX20_04621 0.63 +0.9 4,841,158 + MPMX20_04621 0.63 -0.8 4,841,166 - MPMX20_04621 0.64 +0.3 4,841,166 - MPMX20_04621 0.64 +0.1 4,841,188 + MPMX20_04621 0.65 -1.3 4,841,284 + MPMX20_04621 0.71 -0.4 4,841,289 + MPMX20_04621 0.72 +0.3 4,841,289 + MPMX20_04621 0.72 +0.3 4,841,289 + MPMX20_04621 0.72 -0.8 4,841,289 + MPMX20_04621 0.72 -0.1 4,841,303 - MPMX20_04621 0.73 -0.5 4,841,319 + MPMX20_04621 0.74 -1.1 4,841,319 + MPMX20_04621 0.74 -0.7 4,841,319 + MPMX20_04621 0.74 +1.1 4,841,319 + MPMX20_04621 0.74 +0.9 4,841,319 + MPMX20_04621 0.74 +0.9 4,841,319 + MPMX20_04621 0.74 +1.7 4,841,327 - MPMX20_04621 0.74 +0.1 4,841,327 - MPMX20_04621 0.74 -0.3 4,841,327 - MPMX20_04621 0.74 -0.6 4,841,327 - MPMX20_04621 0.74 +1.1 4,841,327 - MPMX20_04621 0.74 +0.1 4,841,327 - MPMX20_04621 0.74 -0.6 4,841,347 + MPMX20_04621 0.76 +1.1 4,841,353 - MPMX20_04621 0.76 +0.8 4,841,353 - MPMX20_04621 0.76 -0.2 4,841,445 + MPMX20_04621 0.82 +0.0 4,841,523 - MPMX20_04621 0.87 +1.1 4,841,533 - MPMX20_04621 0.88 -0.3 4,841,572 + +1.1 4,841,580 - +0.3 4,841,643 + +2.3 4,841,661 - +0.1 4,841,715 + -0.5 4,841,726 + -0.8 4,841,770 + -1.9 4,841,779 + +1.3 4,841,779 + +0.8 4,841,779 + -0.6 4,841,930 + MPMX20_04622 0.16 +0.4 4,841,930 + MPMX20_04622 0.16 +1.4 4,841,930 + MPMX20_04622 0.16 +0.1 4,841,930 + MPMX20_04622 0.16 -2.4 4,841,930 + MPMX20_04622 0.16 +0.5 4,841,938 - MPMX20_04622 0.16 +1.1 4,841,938 - MPMX20_04622 0.16 +0.3 4,841,986 + MPMX20_04622 0.19 -1.2 4,841,987 + MPMX20_04622 0.19 +1.7 4,842,073 + MPMX20_04622 0.25 +0.8 4,842,122 + MPMX20_04622 0.29 +0.2 4,842,122 + MPMX20_04622 0.29 -0.3 4,842,155 + MPMX20_04622 0.31 +0.8 4,842,163 + MPMX20_04622 0.32 -2.1 4,842,168 + MPMX20_04622 0.32 -1.7 4,842,186 - MPMX20_04622 0.33 -1.5 4,842,186 - MPMX20_04622 0.33 -0.3 4,842,201 - MPMX20_04622 0.34 +1.1 4,842,220 - MPMX20_04622 0.36 +0.6 4,842,249 + MPMX20_04622 0.38 -1.6 4,842,329 + MPMX20_04622 0.43 +0.1 4,842,357 + MPMX20_04622 0.45 +1.3 4,842,373 - MPMX20_04622 0.46 -0.8 4,842,373 - MPMX20_04622 0.46 +1.7 4,842,446 + MPMX20_04622 0.51 -0.5 4,842,519 + MPMX20_04622 0.56 +0.3 4,842,523 - MPMX20_04622 0.56 -0.3 4,842,570 + MPMX20_04622 0.60 -0.8 4,842,694 - MPMX20_04622 0.68 +0.9 4,842,703 - MPMX20_04622 0.69 -0.5 4,842,704 + MPMX20_04622 0.69 +2.7
Or see this region's nucleotide sequence