Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04461

Experiment: 0.1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04459 and MPMX20_04460 are separated by 161 nucleotidesMPMX20_04460 and MPMX20_04461 are separated by 51 nucleotidesMPMX20_04461 and MPMX20_04462 are separated by 42 nucleotides MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661 _04459 MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290 _04460 MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238 _04461 MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231 _04462 Position (kb) 4664 4665 4666Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8 9at 4663.384 kb on + strand, within MPMX20_04459at 4663.438 kb on - strand, within MPMX20_04459at 4663.549 kb on + strand, within MPMX20_04459at 4663.552 kb on - strand, within MPMX20_04459at 4663.562 kb on - strand, within MPMX20_04459at 4663.602 kb on + strandat 4663.610 kb on - strandat 4663.612 kb on + strandat 4663.612 kb on + strandat 4663.617 kb on + strandat 4663.620 kb on - strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.647 kb on - strandat 4663.647 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.667 kb on + strandat 4663.667 kb on + strandat 4663.667 kb on - strandat 4663.682 kb on + strandat 4663.891 kb on + strand, within MPMX20_04460at 4663.897 kb on - strand, within MPMX20_04460at 4663.943 kb on - strand, within MPMX20_04460at 4663.980 kb on + strand, within MPMX20_04460at 4663.988 kb on - strand, within MPMX20_04460at 4664.016 kb on + strand, within MPMX20_04460at 4664.047 kb on - strand, within MPMX20_04460at 4664.147 kb on - strand, within MPMX20_04460at 4664.192 kb on - strand, within MPMX20_04460at 4664.208 kb on + strand, within MPMX20_04460at 4664.238 kb on + strand, within MPMX20_04460at 4664.243 kb on + strand, within MPMX20_04460at 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.256 kb on - strandat 4664.256 kb on - strandat 4664.256 kb on - strandat 4664.275 kb on - strandat 4664.282 kb on - strandat 4664.365 kb on + strandat 4664.380 kb on - strandat 4664.380 kb on - strandat 4664.387 kb on - strandat 4664.455 kb on - strand, within MPMX20_04461at 4664.503 kb on - strand, within MPMX20_04461at 4664.511 kb on + strand, within MPMX20_04461at 4664.513 kb on - strand, within MPMX20_04461at 4664.556 kb on + strand, within MPMX20_04461at 4664.572 kb on + strand, within MPMX20_04461at 4664.584 kb on + strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.638 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461at 4664.674 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.679 kb on + strand, within MPMX20_04461at 4664.687 kb on - strand, within MPMX20_04461at 4664.692 kb on - strand, within MPMX20_04461at 4664.735 kb on + strand, within MPMX20_04461at 4664.765 kb on - strand, within MPMX20_04461at 4664.779 kb on + strand, within MPMX20_04461at 4664.801 kb on + strand, within MPMX20_04461at 4664.987 kb on - strand, within MPMX20_04461at 4664.997 kb on - strand, within MPMX20_04461at 4665.025 kb on + strand, within MPMX20_04461at 4665.025 kb on + strand, within MPMX20_04461at 4665.084 kb on + strand, within MPMX20_04461at 4665.209 kb on + strandat 4665.271 kb on + strandat 4665.366 kb on - strandat 4665.407 kb on + strand, within MPMX20_04462at 4665.468 kb on + strand, within MPMX20_04462at 4665.473 kb on + strand, within MPMX20_04462at 4665.678 kb on - strand, within MPMX20_04462at 4665.724 kb on - strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.868 kb on + strand, within MPMX20_04462at 4665.876 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.922 kb on + strand, within MPMX20_04462at 4665.970 kb on - strand, within MPMX20_04462at 4666.145 kb on + strandat 4666.163 kb on - strandat 4666.176 kb on - strandat 4666.182 kb on + strandat 4666.190 kb on - strandat 4666.213 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037
remove
4,663,384 + MPMX20_04459 0.68 -1.9
4,663,438 - MPMX20_04459 0.74 +0.2
4,663,549 + MPMX20_04459 0.87 -1.0
4,663,552 - MPMX20_04459 0.87 -0.3
4,663,562 - MPMX20_04459 0.89 +0.3
4,663,602 + +0.5
4,663,610 - -0.6
4,663,612 + +1.6
4,663,612 + +0.1
4,663,617 + -0.9
4,663,620 - -0.5
4,663,644 + +3.2
4,663,644 + -0.2
4,663,644 + +0.0
4,663,644 + -1.8
4,663,647 - -2.7
4,663,647 - -0.4
4,663,652 - +1.0
4,663,652 - +0.0
4,663,652 - -2.9
4,663,652 - -1.4
4,663,652 - +2.6
4,663,667 + -0.8
4,663,667 + +0.3
4,663,667 - -1.1
4,663,682 + +1.0
4,663,891 + MPMX20_04460 0.15 +0.3
4,663,897 - MPMX20_04460 0.16 -0.1
4,663,943 - MPMX20_04460 0.26 +2.9
4,663,980 + MPMX20_04460 0.34 -1.3
4,663,988 - MPMX20_04460 0.35 +1.6
4,664,016 + MPMX20_04460 0.41 -1.1
4,664,047 - MPMX20_04460 0.48 +0.0
4,664,147 - MPMX20_04460 0.69 -0.5
4,664,192 - MPMX20_04460 0.79 -0.4
4,664,208 + MPMX20_04460 0.82 +1.6
4,664,238 + MPMX20_04460 0.89 -0.5
4,664,243 + MPMX20_04460 0.90 -2.0
4,664,248 + +1.3
4,664,248 + -0.3
4,664,248 + -2.7
4,664,248 + +0.4
4,664,248 + -2.2
4,664,248 + -1.0
4,664,256 - -0.9
4,664,256 - +1.2
4,664,256 - -0.5
4,664,275 - -1.1
4,664,282 - -0.1
4,664,365 + +1.0
4,664,380 - +0.3
4,664,380 - +0.3
4,664,387 - +0.6
4,664,455 - MPMX20_04461 0.13 -0.1
4,664,503 - MPMX20_04461 0.18 -0.0
4,664,511 + MPMX20_04461 0.19 -0.8
4,664,513 - MPMX20_04461 0.19 +2.3
4,664,556 + MPMX20_04461 0.24 -1.0
4,664,572 + MPMX20_04461 0.26 +8.9
4,664,584 + MPMX20_04461 0.27 -1.4
4,664,614 - MPMX20_04461 0.30 -0.2
4,664,614 - MPMX20_04461 0.30 -0.4
4,664,638 + MPMX20_04461 0.33 +0.0
4,664,643 + MPMX20_04461 0.34 +0.5
4,664,643 + MPMX20_04461 0.34 +2.0
4,664,674 + MPMX20_04461 0.37 -0.9
4,664,679 + MPMX20_04461 0.38 -1.2
4,664,679 + MPMX20_04461 0.38 -0.8
4,664,679 + MPMX20_04461 0.38 -0.4
4,664,687 - MPMX20_04461 0.38 -0.5
4,664,692 - MPMX20_04461 0.39 -1.4
4,664,735 + MPMX20_04461 0.44 +1.4
4,664,765 - MPMX20_04461 0.47 -0.6
4,664,779 + MPMX20_04461 0.49 +2.6
4,664,801 + MPMX20_04461 0.51 -0.5
4,664,987 - MPMX20_04461 0.72 -1.5
4,664,997 - MPMX20_04461 0.73 -0.9
4,665,025 + MPMX20_04461 0.76 +0.8
4,665,025 + MPMX20_04461 0.76 +2.6
4,665,084 + MPMX20_04461 0.83 -0.4
4,665,209 + -0.2
4,665,271 + -0.6
4,665,366 - +0.3
4,665,407 + MPMX20_04462 0.13 +0.3
4,665,468 + MPMX20_04462 0.20 -0.4
4,665,473 + MPMX20_04462 0.20 -0.4
4,665,678 - MPMX20_04462 0.42 +2.0
4,665,724 - MPMX20_04462 0.47 +2.6
4,665,774 + MPMX20_04462 0.52 +1.3
4,665,774 + MPMX20_04462 0.52 -1.2
4,665,868 + MPMX20_04462 0.62 -0.2
4,665,876 - MPMX20_04462 0.63 +3.0
4,665,915 - MPMX20_04462 0.67 -1.1
4,665,915 - MPMX20_04462 0.67 -1.3
4,665,922 + MPMX20_04462 0.67 -0.5
4,665,970 - MPMX20_04462 0.72 -1.0
4,666,145 + -0.9
4,666,163 - -1.5
4,666,176 - -1.2
4,666,182 + +0.3
4,666,190 - +0.8
4,666,213 + -0.0

Or see this region's nucleotide sequence