Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04537

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04536 and MPMX20_04537 are separated by 94 nucleotidesMPMX20_04537 and MPMX20_04538 are separated by 9 nucleotides MPMX20_04536: MPMX20_04536 - Cell division protein FtsN, at 4,750,043 to 4,750,948 _04536 MPMX20_04537: MPMX20_04537 - ATP-dependent protease subunit HslV, at 4,751,043 to 4,751,573 _04537 MPMX20_04538: MPMX20_04538 - ATP-dependent protease ATPase subunit HslU, at 4,751,583 to 4,752,914 _04538 Position (kb) 4751 4752Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 4750.247 kb on - strand, within MPMX20_04536at 4750.299 kb on - strand, within MPMX20_04536at 4750.371 kb on + strand, within MPMX20_04536at 4750.371 kb on + strand, within MPMX20_04536at 4750.379 kb on - strand, within MPMX20_04536at 4750.379 kb on - strand, within MPMX20_04536at 4750.394 kb on + strand, within MPMX20_04536at 4750.451 kb on + strand, within MPMX20_04536at 4750.463 kb on + strand, within MPMX20_04536at 4750.476 kb on - strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.546 kb on + strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.554 kb on - strand, within MPMX20_04536at 4750.630 kb on + strand, within MPMX20_04536at 4750.638 kb on - strand, within MPMX20_04536at 4750.734 kb on - strand, within MPMX20_04536at 4750.750 kb on + strand, within MPMX20_04536at 4750.758 kb on - strand, within MPMX20_04536at 4750.803 kb on + strand, within MPMX20_04536at 4750.810 kb on - strand, within MPMX20_04536at 4750.951 kb on + strandat 4750.993 kb on - strandat 4750.997 kb on + strandat 4751.003 kb on + strandat 4751.006 kb on - strandat 4751.111 kb on + strand, within MPMX20_04537at 4751.111 kb on + strand, within MPMX20_04537at 4751.111 kb on + strand, within MPMX20_04537at 4751.111 kb on + strand, within MPMX20_04537at 4751.119 kb on - strand, within MPMX20_04537at 4751.119 kb on - strand, within MPMX20_04537at 4751.119 kb on - strand, within MPMX20_04537at 4751.119 kb on - strand, within MPMX20_04537at 4751.119 kb on - strand, within MPMX20_04537at 4751.203 kb on + strand, within MPMX20_04537at 4751.203 kb on + strand, within MPMX20_04537at 4751.203 kb on - strand, within MPMX20_04537at 4751.213 kb on + strand, within MPMX20_04537at 4751.244 kb on + strand, within MPMX20_04537at 4751.266 kb on - strand, within MPMX20_04537at 4751.309 kb on + strand, within MPMX20_04537at 4751.431 kb on - strand, within MPMX20_04537at 4751.467 kb on + strand, within MPMX20_04537at 4751.545 kb on - strandat 4751.568 kb on + strandat 4751.576 kb on - strandat 4751.629 kb on - strandat 4751.645 kb on - strandat 4751.645 kb on - strandat 4751.650 kb on - strandat 4751.650 kb on - strandat 4751.650 kb on - strandat 4751.673 kb on - strandat 4751.707 kb on - strandat 4751.709 kb on + strandat 4751.712 kb on - strandat 4751.717 kb on - strand, within MPMX20_04538at 4751.801 kb on + strand, within MPMX20_04538at 4751.926 kb on - strand, within MPMX20_04538at 4752.016 kb on + strand, within MPMX20_04538at 4752.021 kb on + strand, within MPMX20_04538at 4752.024 kb on - strand, within MPMX20_04538at 4752.120 kb on + strand, within MPMX20_04538at 4752.122 kb on + strand, within MPMX20_04538at 4752.130 kb on - strand, within MPMX20_04538at 4752.162 kb on - strand, within MPMX20_04538at 4752.303 kb on - strand, within MPMX20_04538at 4752.411 kb on + strand, within MPMX20_04538at 4752.440 kb on + strand, within MPMX20_04538at 4752.470 kb on + strand, within MPMX20_04538at 4752.470 kb on + strand, within MPMX20_04538at 4752.526 kb on + strand, within MPMX20_04538

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
remove
4,750,247 - MPMX20_04536 0.23 +0.1
4,750,299 - MPMX20_04536 0.28 +2.6
4,750,371 + MPMX20_04536 0.36 +1.6
4,750,371 + MPMX20_04536 0.36 +2.9
4,750,379 - MPMX20_04536 0.37 -0.1
4,750,379 - MPMX20_04536 0.37 +2.5
4,750,394 + MPMX20_04536 0.39 +0.5
4,750,451 + MPMX20_04536 0.45 +1.3
4,750,463 + MPMX20_04536 0.46 +1.1
4,750,476 - MPMX20_04536 0.48 +2.9
4,750,546 + MPMX20_04536 0.56 -0.5
4,750,546 + MPMX20_04536 0.56 +2.5
4,750,546 + MPMX20_04536 0.56 +0.2
4,750,546 + MPMX20_04536 0.56 +0.6
4,750,546 + MPMX20_04536 0.56 +0.4
4,750,546 + MPMX20_04536 0.56 -0.5
4,750,546 + MPMX20_04536 0.56 +2.9
4,750,546 + MPMX20_04536 0.56 +0.9
4,750,546 + MPMX20_04536 0.56 -0.7
4,750,546 + MPMX20_04536 0.56 +0.4
4,750,554 - MPMX20_04536 0.56 +9.5
4,750,554 - MPMX20_04536 0.56 +2.9
4,750,554 - MPMX20_04536 0.56 +4.5
4,750,554 - MPMX20_04536 0.56 +1.2
4,750,554 - MPMX20_04536 0.56 +2.8
4,750,554 - MPMX20_04536 0.56 +1.3
4,750,630 + MPMX20_04536 0.65 +1.2
4,750,638 - MPMX20_04536 0.66 +1.8
4,750,734 - MPMX20_04536 0.76 +2.9
4,750,750 + MPMX20_04536 0.78 +2.9
4,750,758 - MPMX20_04536 0.79 +1.6
4,750,803 + MPMX20_04536 0.84 +3.7
4,750,810 - MPMX20_04536 0.85 +1.6
4,750,951 + -1.5
4,750,993 - -0.1
4,750,997 + -1.0
4,751,003 + +1.0
4,751,006 - +0.2
4,751,111 + MPMX20_04537 0.13 -0.3
4,751,111 + MPMX20_04537 0.13 +1.1
4,751,111 + MPMX20_04537 0.13 -0.5
4,751,111 + MPMX20_04537 0.13 +1.9
4,751,119 - MPMX20_04537 0.14 +0.4
4,751,119 - MPMX20_04537 0.14 -0.1
4,751,119 - MPMX20_04537 0.14 -0.6
4,751,119 - MPMX20_04537 0.14 -0.6
4,751,119 - MPMX20_04537 0.14 -0.6
4,751,203 + MPMX20_04537 0.30 -0.1
4,751,203 + MPMX20_04537 0.30 +0.2
4,751,203 - MPMX20_04537 0.30 -2.2
4,751,213 + MPMX20_04537 0.32 +0.2
4,751,244 + MPMX20_04537 0.38 -0.8
4,751,266 - MPMX20_04537 0.42 -0.5
4,751,309 + MPMX20_04537 0.50 +4.4
4,751,431 - MPMX20_04537 0.73 +1.2
4,751,467 + MPMX20_04537 0.80 +0.3
4,751,545 - -2.7
4,751,568 + +1.7
4,751,576 - -0.1
4,751,629 - -0.7
4,751,645 - +2.9
4,751,645 - -1.7
4,751,650 - -0.1
4,751,650 - -0.8
4,751,650 - +1.7
4,751,673 - -0.5
4,751,707 - +0.7
4,751,709 + -0.0
4,751,712 - -0.1
4,751,717 - MPMX20_04538 0.10 -1.7
4,751,801 + MPMX20_04538 0.16 +0.1
4,751,926 - MPMX20_04538 0.26 +0.1
4,752,016 + MPMX20_04538 0.33 -1.3
4,752,021 + MPMX20_04538 0.33 -1.4
4,752,024 - MPMX20_04538 0.33 -0.6
4,752,120 + MPMX20_04538 0.40 -1.6
4,752,122 + MPMX20_04538 0.40 -0.6
4,752,130 - MPMX20_04538 0.41 -0.3
4,752,162 - MPMX20_04538 0.43 -0.2
4,752,303 - MPMX20_04538 0.54 -1.7
4,752,411 + MPMX20_04538 0.62 -0.5
4,752,440 + MPMX20_04538 0.64 +0.8
4,752,470 + MPMX20_04538 0.67 +1.9
4,752,470 + MPMX20_04538 0.67 -0.9
4,752,526 + MPMX20_04538 0.71 +1.6

Or see this region's nucleotide sequence