Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04305 and MPMX20_04306 are separated by 84 nucleotides MPMX20_04306 and MPMX20_04307 are separated by 16 nucleotides MPMX20_04307 and MPMX20_04308 are separated by 47 nucleotides
MPMX20_04305: MPMX20_04305 - HTH-type transcriptional regulator MalT, at 4,493,352 to 4,496,057
_04305
MPMX20_04306: MPMX20_04306 - Glycerol-3-phosphate regulon repressor, at 4,496,142 to 4,496,900
_04306
MPMX20_04307: MPMX20_04307 - Rhomboid protease GlpG, at 4,496,917 to 4,497,747
_04307
MPMX20_04308: MPMX20_04308 - Thiosulfate sulfurtransferase GlpE, at 4,497,795 to 4,498,127
_04308
Position (kb)
4496
4497 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4495.183 kb on + strand, within MPMX20_04305 at 4495.244 kb on + strand, within MPMX20_04305 at 4495.244 kb on + strand, within MPMX20_04305 at 4495.288 kb on + strand, within MPMX20_04305 at 4495.298 kb on + strand, within MPMX20_04305 at 4495.306 kb on - strand, within MPMX20_04305 at 4495.306 kb on - strand, within MPMX20_04305 at 4495.313 kb on + strand, within MPMX20_04305 at 4495.366 kb on + strand, within MPMX20_04305 at 4495.374 kb on - strand, within MPMX20_04305 at 4495.374 kb on - strand, within MPMX20_04305 at 4495.378 kb on + strand, within MPMX20_04305 at 4495.378 kb on + strand, within MPMX20_04305 at 4495.379 kb on - strand, within MPMX20_04305 at 4495.379 kb on - strand, within MPMX20_04305 at 4495.400 kb on + strand, within MPMX20_04305 at 4495.432 kb on - strand, within MPMX20_04305 at 4495.676 kb on - strand, within MPMX20_04305 at 4495.689 kb on - strand, within MPMX20_04305 at 4495.727 kb on + strand, within MPMX20_04305 at 4495.739 kb on + strand, within MPMX20_04305 at 4495.753 kb on + strand, within MPMX20_04305 at 4495.796 kb on + strand at 4495.849 kb on - strand at 4495.889 kb on + strand at 4495.894 kb on + strand at 4495.897 kb on - strand at 4495.899 kb on + strand at 4495.907 kb on - strand at 4496.060 kb on - strand at 4496.088 kb on - strand at 4496.094 kb on - strand at 4496.099 kb on - strand at 4496.099 kb on - strand at 4496.148 kb on - strand at 4496.148 kb on - strand at 4496.158 kb on - strand at 4496.184 kb on + strand at 4496.259 kb on + strand, within MPMX20_04306 at 4496.269 kb on + strand, within MPMX20_04306 at 4496.277 kb on - strand, within MPMX20_04306 at 4496.277 kb on - strand, within MPMX20_04306 at 4496.277 kb on - strand, within MPMX20_04306 at 4496.278 kb on - strand, within MPMX20_04306 at 4496.289 kb on + strand, within MPMX20_04306 at 4496.291 kb on + strand, within MPMX20_04306 at 4496.299 kb on - strand, within MPMX20_04306 at 4496.587 kb on + strand, within MPMX20_04306 at 4496.694 kb on - strand, within MPMX20_04306 at 4496.694 kb on - strand, within MPMX20_04306 at 4496.699 kb on + strand, within MPMX20_04306 at 4496.783 kb on + strand, within MPMX20_04306 at 4496.831 kb on + strand at 4496.896 kb on - strand at 4496.934 kb on + strand at 4496.976 kb on + strand at 4496.994 kb on - strand at 4497.018 kb on + strand, within MPMX20_04307 at 4497.104 kb on + strand, within MPMX20_04307 at 4497.104 kb on + strand, within MPMX20_04307 at 4497.104 kb on + strand, within MPMX20_04307 at 4497.104 kb on + strand, within MPMX20_04307 at 4497.111 kb on + strand, within MPMX20_04307 at 4497.117 kb on - strand, within MPMX20_04307 at 4497.191 kb on + strand, within MPMX20_04307 at 4497.191 kb on - strand, within MPMX20_04307 at 4497.191 kb on - strand, within MPMX20_04307 at 4497.211 kb on - strand, within MPMX20_04307 at 4497.228 kb on + strand, within MPMX20_04307 at 4497.379 kb on - strand, within MPMX20_04307 at 4497.383 kb on - strand, within MPMX20_04307 at 4497.454 kb on - strand, within MPMX20_04307 at 4497.456 kb on + strand, within MPMX20_04307 at 4497.468 kb on - strand, within MPMX20_04307 at 4497.519 kb on - strand, within MPMX20_04307 at 4497.633 kb on + strand, within MPMX20_04307 at 4497.669 kb on + strand at 4497.669 kb on + strand at 4497.677 kb on - strand at 4497.677 kb on - strand at 4497.711 kb on - strand at 4497.721 kb on - strand at 4497.728 kb on - strand at 4497.743 kb on + strand at 4497.877 kb on + strand, within MPMX20_04308
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 4,495,183 + MPMX20_04305 0.68 -1.0 4,495,244 + MPMX20_04305 0.70 -1.0 4,495,244 + MPMX20_04305 0.70 -1.9 4,495,288 + MPMX20_04305 0.72 -0.8 4,495,298 + MPMX20_04305 0.72 +0.3 4,495,306 - MPMX20_04305 0.72 +0.7 4,495,306 - MPMX20_04305 0.72 +1.3 4,495,313 + MPMX20_04305 0.72 -1.0 4,495,366 + MPMX20_04305 0.74 +1.3 4,495,374 - MPMX20_04305 0.75 -1.3 4,495,374 - MPMX20_04305 0.75 -0.1 4,495,378 + MPMX20_04305 0.75 -0.1 4,495,378 + MPMX20_04305 0.75 +0.1 4,495,379 - MPMX20_04305 0.75 -2.1 4,495,379 - MPMX20_04305 0.75 +0.3 4,495,400 + MPMX20_04305 0.76 -0.2 4,495,432 - MPMX20_04305 0.77 +0.8 4,495,676 - MPMX20_04305 0.86 -0.6 4,495,689 - MPMX20_04305 0.86 +0.6 4,495,727 + MPMX20_04305 0.88 -1.6 4,495,739 + MPMX20_04305 0.88 +1.3 4,495,753 + MPMX20_04305 0.89 +1.5 4,495,796 + -1.2 4,495,849 - +0.6 4,495,889 + -0.9 4,495,894 + +0.1 4,495,897 - -0.2 4,495,899 + -0.3 4,495,907 - -0.8 4,496,060 - -1.3 4,496,088 - +1.9 4,496,094 - +2.9 4,496,099 - -0.9 4,496,099 - +0.9 4,496,148 - +0.1 4,496,148 - +0.3 4,496,158 - -2.7 4,496,184 + -2.9 4,496,259 + MPMX20_04306 0.15 +0.4 4,496,269 + MPMX20_04306 0.17 -0.6 4,496,277 - MPMX20_04306 0.18 -1.3 4,496,277 - MPMX20_04306 0.18 -1.6 4,496,277 - MPMX20_04306 0.18 -3.1 4,496,278 - MPMX20_04306 0.18 +0.4 4,496,289 + MPMX20_04306 0.19 -1.1 4,496,291 + MPMX20_04306 0.20 +2.9 4,496,299 - MPMX20_04306 0.21 -0.6 4,496,587 + MPMX20_04306 0.59 -0.1 4,496,694 - MPMX20_04306 0.73 -1.6 4,496,694 - MPMX20_04306 0.73 +0.6 4,496,699 + MPMX20_04306 0.73 -0.6 4,496,783 + MPMX20_04306 0.84 -0.6 4,496,831 + -2.3 4,496,896 - -1.1 4,496,934 + -0.4 4,496,976 + -1.0 4,496,994 - -0.4 4,497,018 + MPMX20_04307 0.12 +0.2 4,497,104 + MPMX20_04307 0.23 -1.3 4,497,104 + MPMX20_04307 0.23 -0.8 4,497,104 + MPMX20_04307 0.23 +1.7 4,497,104 + MPMX20_04307 0.23 -0.9 4,497,111 + MPMX20_04307 0.23 -2.6 4,497,117 - MPMX20_04307 0.24 +1.3 4,497,191 + MPMX20_04307 0.33 -0.4 4,497,191 - MPMX20_04307 0.33 -0.8 4,497,191 - MPMX20_04307 0.33 -0.0 4,497,211 - MPMX20_04307 0.35 +0.8 4,497,228 + MPMX20_04307 0.37 -0.1 4,497,379 - MPMX20_04307 0.56 +0.2 4,497,383 - MPMX20_04307 0.56 -1.6 4,497,454 - MPMX20_04307 0.65 -0.0 4,497,456 + MPMX20_04307 0.65 +1.3 4,497,468 - MPMX20_04307 0.66 -1.6 4,497,519 - MPMX20_04307 0.72 +1.9 4,497,633 + MPMX20_04307 0.86 -0.7 4,497,669 + -1.7 4,497,669 + +0.1 4,497,677 - -1.5 4,497,677 - -1.1 4,497,711 - +1.3 4,497,721 - -0.5 4,497,728 - +1.2 4,497,743 + -1.3 4,497,877 + MPMX20_04308 0.25 -0.7
Or see this region's nucleotide sequence