Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04306

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04305 and MPMX20_04306 are separated by 84 nucleotidesMPMX20_04306 and MPMX20_04307 are separated by 16 nucleotidesMPMX20_04307 and MPMX20_04308 are separated by 47 nucleotides MPMX20_04305: MPMX20_04305 - HTH-type transcriptional regulator MalT, at 4,493,352 to 4,496,057 _04305 MPMX20_04306: MPMX20_04306 - Glycerol-3-phosphate regulon repressor, at 4,496,142 to 4,496,900 _04306 MPMX20_04307: MPMX20_04307 - Rhomboid protease GlpG, at 4,496,917 to 4,497,747 _04307 MPMX20_04308: MPMX20_04308 - Thiosulfate sulfurtransferase GlpE, at 4,497,795 to 4,498,127 _04308 Position (kb) 4496 4497Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4495.183 kb on + strand, within MPMX20_04305at 4495.244 kb on + strand, within MPMX20_04305at 4495.244 kb on + strand, within MPMX20_04305at 4495.288 kb on + strand, within MPMX20_04305at 4495.298 kb on + strand, within MPMX20_04305at 4495.306 kb on - strand, within MPMX20_04305at 4495.306 kb on - strand, within MPMX20_04305at 4495.313 kb on + strand, within MPMX20_04305at 4495.366 kb on + strand, within MPMX20_04305at 4495.374 kb on - strand, within MPMX20_04305at 4495.374 kb on - strand, within MPMX20_04305at 4495.378 kb on + strand, within MPMX20_04305at 4495.378 kb on + strand, within MPMX20_04305at 4495.379 kb on - strand, within MPMX20_04305at 4495.379 kb on - strand, within MPMX20_04305at 4495.400 kb on + strand, within MPMX20_04305at 4495.432 kb on - strand, within MPMX20_04305at 4495.676 kb on - strand, within MPMX20_04305at 4495.689 kb on - strand, within MPMX20_04305at 4495.727 kb on + strand, within MPMX20_04305at 4495.739 kb on + strand, within MPMX20_04305at 4495.753 kb on + strand, within MPMX20_04305at 4495.796 kb on + strandat 4495.849 kb on - strandat 4495.889 kb on + strandat 4495.894 kb on + strandat 4495.897 kb on - strandat 4495.899 kb on + strandat 4495.907 kb on - strandat 4496.060 kb on - strandat 4496.088 kb on - strandat 4496.094 kb on - strandat 4496.099 kb on - strandat 4496.099 kb on - strandat 4496.148 kb on - strandat 4496.148 kb on - strandat 4496.158 kb on - strandat 4496.184 kb on + strandat 4496.259 kb on + strand, within MPMX20_04306at 4496.269 kb on + strand, within MPMX20_04306at 4496.277 kb on - strand, within MPMX20_04306at 4496.277 kb on - strand, within MPMX20_04306at 4496.277 kb on - strand, within MPMX20_04306at 4496.278 kb on - strand, within MPMX20_04306at 4496.289 kb on + strand, within MPMX20_04306at 4496.291 kb on + strand, within MPMX20_04306at 4496.299 kb on - strand, within MPMX20_04306at 4496.587 kb on + strand, within MPMX20_04306at 4496.694 kb on - strand, within MPMX20_04306at 4496.694 kb on - strand, within MPMX20_04306at 4496.699 kb on + strand, within MPMX20_04306at 4496.783 kb on + strand, within MPMX20_04306at 4496.831 kb on + strandat 4496.896 kb on - strandat 4496.934 kb on + strandat 4496.976 kb on + strandat 4496.994 kb on - strandat 4497.018 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.111 kb on + strand, within MPMX20_04307at 4497.117 kb on - strand, within MPMX20_04307at 4497.191 kb on + strand, within MPMX20_04307at 4497.191 kb on - strand, within MPMX20_04307at 4497.191 kb on - strand, within MPMX20_04307at 4497.211 kb on - strand, within MPMX20_04307at 4497.228 kb on + strand, within MPMX20_04307at 4497.379 kb on - strand, within MPMX20_04307at 4497.383 kb on - strand, within MPMX20_04307at 4497.454 kb on - strand, within MPMX20_04307at 4497.456 kb on + strand, within MPMX20_04307at 4497.468 kb on - strand, within MPMX20_04307at 4497.519 kb on - strand, within MPMX20_04307at 4497.633 kb on + strand, within MPMX20_04307at 4497.669 kb on + strandat 4497.669 kb on + strandat 4497.677 kb on - strandat 4497.677 kb on - strandat 4497.711 kb on - strandat 4497.721 kb on - strandat 4497.728 kb on - strandat 4497.743 kb on + strandat 4497.877 kb on + strand, within MPMX20_04308

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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4,495,183 + MPMX20_04305 0.68 -1.0
4,495,244 + MPMX20_04305 0.70 -1.0
4,495,244 + MPMX20_04305 0.70 -1.9
4,495,288 + MPMX20_04305 0.72 -0.8
4,495,298 + MPMX20_04305 0.72 +0.3
4,495,306 - MPMX20_04305 0.72 +0.7
4,495,306 - MPMX20_04305 0.72 +1.3
4,495,313 + MPMX20_04305 0.72 -1.0
4,495,366 + MPMX20_04305 0.74 +1.3
4,495,374 - MPMX20_04305 0.75 -1.3
4,495,374 - MPMX20_04305 0.75 -0.1
4,495,378 + MPMX20_04305 0.75 -0.1
4,495,378 + MPMX20_04305 0.75 +0.1
4,495,379 - MPMX20_04305 0.75 -2.1
4,495,379 - MPMX20_04305 0.75 +0.3
4,495,400 + MPMX20_04305 0.76 -0.2
4,495,432 - MPMX20_04305 0.77 +0.8
4,495,676 - MPMX20_04305 0.86 -0.6
4,495,689 - MPMX20_04305 0.86 +0.6
4,495,727 + MPMX20_04305 0.88 -1.6
4,495,739 + MPMX20_04305 0.88 +1.3
4,495,753 + MPMX20_04305 0.89 +1.5
4,495,796 + -1.2
4,495,849 - +0.6
4,495,889 + -0.9
4,495,894 + +0.1
4,495,897 - -0.2
4,495,899 + -0.3
4,495,907 - -0.8
4,496,060 - -1.3
4,496,088 - +1.9
4,496,094 - +2.9
4,496,099 - -0.9
4,496,099 - +0.9
4,496,148 - +0.1
4,496,148 - +0.3
4,496,158 - -2.7
4,496,184 + -2.9
4,496,259 + MPMX20_04306 0.15 +0.4
4,496,269 + MPMX20_04306 0.17 -0.6
4,496,277 - MPMX20_04306 0.18 -1.3
4,496,277 - MPMX20_04306 0.18 -1.6
4,496,277 - MPMX20_04306 0.18 -3.1
4,496,278 - MPMX20_04306 0.18 +0.4
4,496,289 + MPMX20_04306 0.19 -1.1
4,496,291 + MPMX20_04306 0.20 +2.9
4,496,299 - MPMX20_04306 0.21 -0.6
4,496,587 + MPMX20_04306 0.59 -0.1
4,496,694 - MPMX20_04306 0.73 -1.6
4,496,694 - MPMX20_04306 0.73 +0.6
4,496,699 + MPMX20_04306 0.73 -0.6
4,496,783 + MPMX20_04306 0.84 -0.6
4,496,831 + -2.3
4,496,896 - -1.1
4,496,934 + -0.4
4,496,976 + -1.0
4,496,994 - -0.4
4,497,018 + MPMX20_04307 0.12 +0.2
4,497,104 + MPMX20_04307 0.23 -1.3
4,497,104 + MPMX20_04307 0.23 -0.8
4,497,104 + MPMX20_04307 0.23 +1.7
4,497,104 + MPMX20_04307 0.23 -0.9
4,497,111 + MPMX20_04307 0.23 -2.6
4,497,117 - MPMX20_04307 0.24 +1.3
4,497,191 + MPMX20_04307 0.33 -0.4
4,497,191 - MPMX20_04307 0.33 -0.8
4,497,191 - MPMX20_04307 0.33 -0.0
4,497,211 - MPMX20_04307 0.35 +0.8
4,497,228 + MPMX20_04307 0.37 -0.1
4,497,379 - MPMX20_04307 0.56 +0.2
4,497,383 - MPMX20_04307 0.56 -1.6
4,497,454 - MPMX20_04307 0.65 -0.0
4,497,456 + MPMX20_04307 0.65 +1.3
4,497,468 - MPMX20_04307 0.66 -1.6
4,497,519 - MPMX20_04307 0.72 +1.9
4,497,633 + MPMX20_04307 0.86 -0.7
4,497,669 + -1.7
4,497,669 + +0.1
4,497,677 - -1.5
4,497,677 - -1.1
4,497,711 - +1.3
4,497,721 - -0.5
4,497,728 - +1.2
4,497,743 + -1.3
4,497,877 + MPMX20_04308 0.25 -0.7

Or see this region's nucleotide sequence