Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03628 and MPMX20_03629 are separated by 116 nucleotides MPMX20_03629 and MPMX20_03630 overlap by 7 nucleotides MPMX20_03630 and MPMX20_03631 overlap by 20 nucleotides
MPMX20_03628: MPMX20_03628 - Murein hydrolase activator NlpD, at 3,817,364 to 3,818,488
_03628
MPMX20_03629: MPMX20_03629 - Protein-L-isoaspartate O-methyltransferase, at 3,818,605 to 3,819,231
_03629
MPMX20_03630: MPMX20_03630 - 5'/3'-nucleotidase SurE, at 3,819,225 to 3,819,986
_03630
MPMX20_03631: MPMX20_03631 - tRNA pseudouridine synthase D, at 3,819,967 to 3,821,016
_03631
Position (kb)
3819
3820 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3818.232 kb on + strand, within MPMX20_03628 at 3818.296 kb on + strand, within MPMX20_03628 at 3818.376 kb on + strand at 3818.376 kb on + strand at 3818.384 kb on - strand at 3818.415 kb on - strand at 3818.424 kb on - strand at 3818.424 kb on - strand at 3818.486 kb on + strand at 3818.486 kb on + strand at 3818.486 kb on + strand at 3818.494 kb on - strand at 3818.504 kb on + strand at 3818.618 kb on + strand at 3818.621 kb on - strand at 3818.781 kb on + strand, within MPMX20_03629 at 3818.781 kb on + strand, within MPMX20_03629 at 3818.909 kb on + strand, within MPMX20_03629 at 3818.917 kb on - strand, within MPMX20_03629 at 3818.925 kb on - strand, within MPMX20_03629 at 3819.052 kb on - strand, within MPMX20_03629 at 3819.072 kb on + strand, within MPMX20_03629 at 3819.084 kb on + strand, within MPMX20_03629 at 3819.188 kb on + strand at 3819.401 kb on + strand, within MPMX20_03630 at 3819.432 kb on + strand, within MPMX20_03630 at 3819.432 kb on + strand, within MPMX20_03630 at 3819.566 kb on + strand, within MPMX20_03630 at 3819.571 kb on - strand, within MPMX20_03630 at 3819.573 kb on + strand, within MPMX20_03630 at 3819.591 kb on + strand, within MPMX20_03630 at 3819.626 kb on + strand, within MPMX20_03630 at 3819.634 kb on - strand, within MPMX20_03630 at 3819.740 kb on - strand, within MPMX20_03630 at 3819.831 kb on + strand, within MPMX20_03630 at 3819.858 kb on + strand, within MPMX20_03630 at 3819.894 kb on + strand, within MPMX20_03630 at 3819.933 kb on + strand at 3819.933 kb on + strand at 3819.972 kb on - strand at 3820.008 kb on - strand at 3820.090 kb on + strand, within MPMX20_03631 at 3820.106 kb on - strand, within MPMX20_03631 at 3820.111 kb on - strand, within MPMX20_03631 at 3820.155 kb on + strand, within MPMX20_03631 at 3820.197 kb on - strand, within MPMX20_03631 at 3820.258 kb on - strand, within MPMX20_03631 at 3820.501 kb on - strand, within MPMX20_03631 at 3820.686 kb on - strand, within MPMX20_03631 at 3820.752 kb on + strand, within MPMX20_03631 at 3820.913 kb on + strand at 3820.960 kb on - strand at 3820.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,818,232 + MPMX20_03628 0.77 +0.2 3,818,296 + MPMX20_03628 0.83 +0.8 3,818,376 + +0.3 3,818,376 + +0.3 3,818,384 - +0.1 3,818,415 - +0.5 3,818,424 - +0.5 3,818,424 - -0.5 3,818,486 + +0.8 3,818,486 + -0.2 3,818,486 + +0.9 3,818,494 - -1.1 3,818,504 + +0.6 3,818,618 + -0.4 3,818,621 - -0.2 3,818,781 + MPMX20_03629 0.28 +0.2 3,818,781 + MPMX20_03629 0.28 -0.6 3,818,909 + MPMX20_03629 0.48 +1.8 3,818,917 - MPMX20_03629 0.50 +0.0 3,818,925 - MPMX20_03629 0.51 -0.8 3,819,052 - MPMX20_03629 0.71 -2.4 3,819,072 + MPMX20_03629 0.74 +0.5 3,819,084 + MPMX20_03629 0.76 +1.2 3,819,188 + +0.8 3,819,401 + MPMX20_03630 0.23 -2.6 3,819,432 + MPMX20_03630 0.27 -0.5 3,819,432 + MPMX20_03630 0.27 +0.1 3,819,566 + MPMX20_03630 0.45 -1.1 3,819,571 - MPMX20_03630 0.45 -0.7 3,819,573 + MPMX20_03630 0.46 +0.5 3,819,591 + MPMX20_03630 0.48 +0.5 3,819,626 + MPMX20_03630 0.53 -0.9 3,819,634 - MPMX20_03630 0.54 -1.5 3,819,740 - MPMX20_03630 0.68 -1.6 3,819,831 + MPMX20_03630 0.80 -0.4 3,819,858 + MPMX20_03630 0.83 -2.2 3,819,894 + MPMX20_03630 0.88 -1.5 3,819,933 + +0.5 3,819,933 + +0.8 3,819,972 - +0.2 3,820,008 - +0.0 3,820,090 + MPMX20_03631 0.12 +0.8 3,820,106 - MPMX20_03631 0.13 +1.8 3,820,111 - MPMX20_03631 0.14 +0.9 3,820,155 + MPMX20_03631 0.18 -0.4 3,820,197 - MPMX20_03631 0.22 -0.9 3,820,258 - MPMX20_03631 0.28 -0.4 3,820,501 - MPMX20_03631 0.51 -1.3 3,820,686 - MPMX20_03631 0.68 -1.1 3,820,752 + MPMX20_03631 0.75 -2.5 3,820,913 + -0.7 3,820,960 - -0.7 3,820,977 - +1.5
Or see this region's nucleotide sequence