Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03447

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03445 and MPMX20_03446 overlap by 16 nucleotidesMPMX20_03446 and MPMX20_03447 are separated by 132 nucleotidesMPMX20_03447 and MPMX20_03448 are separated by 53 nucleotidesMPMX20_03448 and MPMX20_03449 are separated by 314 nucleotides MPMX20_03445: MPMX20_03445 - L-aspartate oxidase, at 3,632,134 to 3,633,753 _03445 MPMX20_03446: MPMX20_03446 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 3,633,738 to 3,634,475 _03446 MPMX20_03447: MPMX20_03447 - ATP-dependent RNA helicase SrmB, at 3,634,608 to 3,635,936 _03447 MPMX20_03448: MPMX20_03448 - Autonomous glycyl radical cofactor, at 3,635,990 to 3,636,373 _03448 MPMX20_03449: MPMX20_03449 - Uracil-DNA glycosylase, at 3,636,688 to 3,637,377 _03449 Position (kb) 3634 3635 3636Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3633.660 kb on + strandat 3633.684 kb on + strandat 3633.728 kb on + strandat 3633.749 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.762 kb on + strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.770 kb on - strandat 3633.789 kb on + strandat 3633.792 kb on - strandat 3633.797 kb on - strandat 3633.802 kb on - strandat 3633.821 kb on + strand, within MPMX20_03446at 3633.898 kb on - strand, within MPMX20_03446at 3634.017 kb on + strand, within MPMX20_03446at 3634.020 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.025 kb on - strand, within MPMX20_03446at 3634.036 kb on - strand, within MPMX20_03446at 3634.061 kb on + strand, within MPMX20_03446at 3634.067 kb on + strand, within MPMX20_03446at 3634.163 kb on + strand, within MPMX20_03446at 3634.163 kb on + strand, within MPMX20_03446at 3634.171 kb on - strand, within MPMX20_03446at 3634.171 kb on - strand, within MPMX20_03446at 3634.177 kb on + strand, within MPMX20_03446at 3634.185 kb on - strand, within MPMX20_03446at 3634.301 kb on - strand, within MPMX20_03446at 3634.345 kb on - strand, within MPMX20_03446at 3634.412 kb on - strandat 3634.475 kb on + strandat 3634.483 kb on - strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.508 kb on + strandat 3634.513 kb on + strandat 3634.516 kb on - strandat 3634.516 kb on - strandat 3634.560 kb on + strandat 3634.567 kb on + strandat 3634.593 kb on + strandat 3634.607 kb on - strandat 3634.650 kb on - strandat 3634.728 kb on - strandat 3634.737 kb on + strandat 3634.744 kb on + strand, within MPMX20_03447at 3634.744 kb on + strand, within MPMX20_03447at 3634.791 kb on + strand, within MPMX20_03447at 3634.917 kb on + strand, within MPMX20_03447at 3635.086 kb on + strand, within MPMX20_03447at 3635.122 kb on - strand, within MPMX20_03447at 3635.133 kb on + strand, within MPMX20_03447at 3635.146 kb on + strand, within MPMX20_03447at 3635.173 kb on - strand, within MPMX20_03447at 3635.184 kb on - strand, within MPMX20_03447at 3635.184 kb on - strand, within MPMX20_03447at 3635.299 kb on + strand, within MPMX20_03447at 3635.299 kb on + strand, within MPMX20_03447at 3635.360 kb on - strand, within MPMX20_03447at 3635.440 kb on - strand, within MPMX20_03447at 3635.513 kb on + strand, within MPMX20_03447at 3635.526 kb on - strand, within MPMX20_03447at 3635.609 kb on - strand, within MPMX20_03447at 3635.611 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.755 kb on + strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.763 kb on - strand, within MPMX20_03447at 3635.988 kb on + strandat 3635.988 kb on + strandat 3635.996 kb on - strandat 3635.997 kb on - strandat 3636.009 kb on - strandat 3636.036 kb on + strand, within MPMX20_03448at 3636.042 kb on - strand, within MPMX20_03448at 3636.042 kb on - strand, within MPMX20_03448at 3636.058 kb on - strand, within MPMX20_03448at 3636.066 kb on - strand, within MPMX20_03448at 3636.083 kb on + strand, within MPMX20_03448at 3636.083 kb on + strand, within MPMX20_03448at 3636.176 kb on - strand, within MPMX20_03448at 3636.274 kb on + strand, within MPMX20_03448at 3636.282 kb on - strand, within MPMX20_03448at 3636.282 kb on - strand, within MPMX20_03448at 3636.321 kb on + strand, within MPMX20_03448at 3636.372 kb on - strandat 3636.383 kb on + strandat 3636.383 kb on + strandat 3636.383 kb on + strandat 3636.391 kb on - strandat 3636.393 kb on + strandat 3636.401 kb on - strandat 3636.401 kb on - strandat 3636.648 kb on + strandat 3636.655 kb on - strandat 3636.659 kb on + strandat 3636.755 kb on - strandat 3636.790 kb on - strand, within MPMX20_03449at 3636.934 kb on - strand, within MPMX20_03449at 3636.935 kb on + strand, within MPMX20_03449

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,633,660 + +0.0
3,633,684 + +0.9
3,633,728 + +0.1
3,633,749 + -0.6
3,633,762 + -0.8
3,633,762 + -2.4
3,633,762 + -0.3
3,633,762 + -0.2
3,633,770 - -1.1
3,633,770 - -0.3
3,633,770 - -0.3
3,633,770 - +0.5
3,633,789 + -0.5
3,633,792 - -0.9
3,633,797 - -1.9
3,633,802 - +0.6
3,633,821 + MPMX20_03446 0.11 +1.3
3,633,898 - MPMX20_03446 0.22 -1.6
3,634,017 + MPMX20_03446 0.38 +0.8
3,634,020 - MPMX20_03446 0.38 -0.5
3,634,025 - MPMX20_03446 0.39 -0.3
3,634,025 - MPMX20_03446 0.39 -1.2
3,634,025 - MPMX20_03446 0.39 -1.5
3,634,036 - MPMX20_03446 0.40 -1.4
3,634,061 + MPMX20_03446 0.44 -1.1
3,634,067 + MPMX20_03446 0.45 +0.6
3,634,163 + MPMX20_03446 0.58 +0.7
3,634,163 + MPMX20_03446 0.58 +3.8
3,634,171 - MPMX20_03446 0.59 +0.5
3,634,171 - MPMX20_03446 0.59 +0.1
3,634,177 + MPMX20_03446 0.59 -1.8
3,634,185 - MPMX20_03446 0.61 +0.6
3,634,301 - MPMX20_03446 0.76 -0.1
3,634,345 - MPMX20_03446 0.82 +0.7
3,634,412 - +2.1
3,634,475 + +0.7
3,634,483 - -2.1
3,634,508 + -2.0
3,634,508 + +1.0
3,634,508 + +1.6
3,634,508 + +1.8
3,634,513 + +0.4
3,634,516 - +0.5
3,634,516 - -0.0
3,634,560 + +0.2
3,634,567 + +1.3
3,634,593 + +1.5
3,634,607 - -0.9
3,634,650 - -0.2
3,634,728 - +0.0
3,634,737 + +0.0
3,634,744 + MPMX20_03447 0.10 -1.7
3,634,744 + MPMX20_03447 0.10 +0.4
3,634,791 + MPMX20_03447 0.14 -1.9
3,634,917 + MPMX20_03447 0.23 +0.4
3,635,086 + MPMX20_03447 0.36 -0.9
3,635,122 - MPMX20_03447 0.39 +0.0
3,635,133 + MPMX20_03447 0.40 -0.6
3,635,146 + MPMX20_03447 0.40 -0.2
3,635,173 - MPMX20_03447 0.43 +0.0
3,635,184 - MPMX20_03447 0.43 +0.8
3,635,184 - MPMX20_03447 0.43 -1.3
3,635,299 + MPMX20_03447 0.52 -0.9
3,635,299 + MPMX20_03447 0.52 -1.8
3,635,360 - MPMX20_03447 0.57 +1.3
3,635,440 - MPMX20_03447 0.63 -1.1
3,635,513 + MPMX20_03447 0.68 -2.0
3,635,526 - MPMX20_03447 0.69 -0.6
3,635,609 - MPMX20_03447 0.75 +0.5
3,635,611 + MPMX20_03447 0.75 -2.6
3,635,755 + MPMX20_03447 0.86 -1.7
3,635,755 + MPMX20_03447 0.86 -1.1
3,635,755 + MPMX20_03447 0.86 +0.3
3,635,755 + MPMX20_03447 0.86 +0.0
3,635,755 + MPMX20_03447 0.86 -2.4
3,635,755 + MPMX20_03447 0.86 +0.5
3,635,755 + MPMX20_03447 0.86 -0.5
3,635,755 + MPMX20_03447 0.86 -0.7
3,635,763 - MPMX20_03447 0.87 +0.7
3,635,763 - MPMX20_03447 0.87 -0.7
3,635,763 - MPMX20_03447 0.87 -0.7
3,635,988 + -0.9
3,635,988 + +1.5
3,635,996 - -0.5
3,635,997 - -0.7
3,636,009 - -0.6
3,636,036 + MPMX20_03448 0.12 -0.1
3,636,042 - MPMX20_03448 0.14 -1.5
3,636,042 - MPMX20_03448 0.14 -0.9
3,636,058 - MPMX20_03448 0.18 +0.5
3,636,066 - MPMX20_03448 0.20 +0.3
3,636,083 + MPMX20_03448 0.24 -0.0
3,636,083 + MPMX20_03448 0.24 +0.5
3,636,176 - MPMX20_03448 0.48 -0.1
3,636,274 + MPMX20_03448 0.74 +0.7
3,636,282 - MPMX20_03448 0.76 +0.8
3,636,282 - MPMX20_03448 0.76 -0.1
3,636,321 + MPMX20_03448 0.86 +2.8
3,636,372 - -1.1
3,636,383 + -2.0
3,636,383 + +0.8
3,636,383 + -0.5
3,636,391 - +1.3
3,636,393 + -0.4
3,636,401 - -1.7
3,636,401 - -2.0
3,636,648 + -0.5
3,636,655 - +0.8
3,636,659 + +1.6
3,636,755 - -1.0
3,636,790 - MPMX20_03449 0.15 +1.8
3,636,934 - MPMX20_03449 0.36 +0.8
3,636,935 + MPMX20_03449 0.36 +0.0

Or see this region's nucleotide sequence