Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03435

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03432 and MPMX20_03433 are separated by 56 nucleotidesMPMX20_03433 and MPMX20_03434 overlap by 4 nucleotidesMPMX20_03434 and MPMX20_03435 overlap by 1 nucleotidesMPMX20_03435 and MPMX20_03436 are separated by 77 nucleotidesMPMX20_03436 and MPMX20_03437 are separated by 71 nucleotides MPMX20_03432: MPMX20_03432 - HTH-type transcriptional regulator MurR, at 3,621,176 to 3,622,024 _03432 MPMX20_03433: MPMX20_03433 - Ferredoxin YfhL, at 3,622,081 to 3,622,341 _03433 MPMX20_03434: MPMX20_03434 - Holo-[acyl-carrier-protein] synthase, at 3,622,338 to 3,622,718 _03434 MPMX20_03435: MPMX20_03435 - Pyridoxine 5'-phosphate synthase, at 3,622,718 to 3,623,449 _03435 MPMX20_03436: MPMX20_03436 - DNA repair protein RecO, at 3,623,527 to 3,624,174 _03436 MPMX20_03437: MPMX20_03437 - GTPase Era, at 3,624,246 to 3,625,151 _03437 Position (kb) 3622 3623 3624Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3621.733 kb on + strand, within MPMX20_03432at 3621.855 kb on + strand, within MPMX20_03432at 3621.864 kb on - strand, within MPMX20_03432at 3621.948 kb on + strandat 3621.948 kb on - strandat 3621.983 kb on - strandat 3621.996 kb on + strandat 3622.004 kb on - strandat 3622.004 kb on - strandat 3622.004 kb on - strandat 3622.018 kb on + strandat 3622.193 kb on + strand, within MPMX20_03433at 3622.208 kb on + strand, within MPMX20_03433at 3622.248 kb on + strand, within MPMX20_03433at 3622.286 kb on - strand, within MPMX20_03433at 3622.286 kb on - strand, within MPMX20_03433at 3622.307 kb on + strand, within MPMX20_03433at 3623.030 kb on - strand, within MPMX20_03435at 3623.030 kb on - strand, within MPMX20_03435at 3623.030 kb on - strand, within MPMX20_03435at 3623.030 kb on - strand, within MPMX20_03435at 3623.384 kb on - strandat 3623.516 kb on + strandat 3623.574 kb on - strandat 3623.586 kb on + strandat 3623.662 kb on - strand, within MPMX20_03436at 3623.673 kb on + strand, within MPMX20_03436at 3623.673 kb on + strand, within MPMX20_03436at 3623.674 kb on - strand, within MPMX20_03436at 3623.741 kb on + strand, within MPMX20_03436at 3623.757 kb on + strand, within MPMX20_03436at 3623.765 kb on - strand, within MPMX20_03436at 3623.880 kb on + strand, within MPMX20_03436at 3623.888 kb on - strand, within MPMX20_03436at 3623.888 kb on - strand, within MPMX20_03436at 3623.942 kb on + strand, within MPMX20_03436at 3623.969 kb on + strand, within MPMX20_03436at 3623.969 kb on + strand, within MPMX20_03436at 3623.969 kb on + strand, within MPMX20_03436at 3623.969 kb on + strand, within MPMX20_03436at 3623.969 kb on - strand, within MPMX20_03436at 3623.977 kb on - strand, within MPMX20_03436at 3623.977 kb on - strand, within MPMX20_03436at 3624.033 kb on - strand, within MPMX20_03436at 3624.040 kb on - strand, within MPMX20_03436at 3624.145 kb on + strandat 3624.171 kb on + strandat 3624.171 kb on + strandat 3624.171 kb on + strandat 3624.171 kb on + strandat 3624.179 kb on - strandat 3624.179 kb on - strandat 3624.197 kb on + strandat 3624.215 kb on - strandat 3624.215 kb on - strandat 3624.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,621,733 + MPMX20_03432 0.66 -0.2
3,621,855 + MPMX20_03432 0.80 -1.8
3,621,864 - MPMX20_03432 0.81 -1.2
3,621,948 + -0.7
3,621,948 - -1.5
3,621,983 - +1.6
3,621,996 + -2.0
3,622,004 - -0.4
3,622,004 - +0.4
3,622,004 - +1.8
3,622,018 + +2.8
3,622,193 + MPMX20_03433 0.43 -0.7
3,622,208 + MPMX20_03433 0.49 -0.3
3,622,248 + MPMX20_03433 0.64 +0.0
3,622,286 - MPMX20_03433 0.79 -1.4
3,622,286 - MPMX20_03433 0.79 -0.4
3,622,307 + MPMX20_03433 0.87 -0.0
3,623,030 - MPMX20_03435 0.43 -1.2
3,623,030 - MPMX20_03435 0.43 +0.5
3,623,030 - MPMX20_03435 0.43 -0.6
3,623,030 - MPMX20_03435 0.43 -1.5
3,623,384 - +1.3
3,623,516 + +1.3
3,623,574 - -0.5
3,623,586 + -1.5
3,623,662 - MPMX20_03436 0.21 -0.2
3,623,673 + MPMX20_03436 0.23 -0.7
3,623,673 + MPMX20_03436 0.23 -0.6
3,623,674 - MPMX20_03436 0.23 -1.2
3,623,741 + MPMX20_03436 0.33 +0.3
3,623,757 + MPMX20_03436 0.35 +0.7
3,623,765 - MPMX20_03436 0.37 +0.8
3,623,880 + MPMX20_03436 0.54 +0.0
3,623,888 - MPMX20_03436 0.56 +1.3
3,623,888 - MPMX20_03436 0.56 -0.5
3,623,942 + MPMX20_03436 0.64 +1.4
3,623,969 + MPMX20_03436 0.68 -0.1
3,623,969 + MPMX20_03436 0.68 +0.3
3,623,969 + MPMX20_03436 0.68 -0.5
3,623,969 + MPMX20_03436 0.68 +0.8
3,623,969 - MPMX20_03436 0.68 +0.4
3,623,977 - MPMX20_03436 0.69 +0.3
3,623,977 - MPMX20_03436 0.69 -1.5
3,624,033 - MPMX20_03436 0.78 -0.7
3,624,040 - MPMX20_03436 0.79 -1.2
3,624,145 + -0.2
3,624,171 + +0.3
3,624,171 + +0.3
3,624,171 + +0.5
3,624,171 + +0.9
3,624,179 - -0.9
3,624,179 - +0.7
3,624,197 + -0.1
3,624,215 - +0.8
3,624,215 - +0.3
3,624,271 - +1.3

Or see this region's nucleotide sequence