Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03393 and MPMX20_03394 are separated by 26 nucleotides MPMX20_03394 and MPMX20_03395 are separated by 293 nucleotides
MPMX20_03393: MPMX20_03393 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 3,573,642 to 3,574,760
_03393
MPMX20_03394: MPMX20_03394 - Cytoskeleton protein RodZ, at 3,574,787 to 3,575,788
_03394
MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248
_03395
Position (kb)
3574
3575
3576 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3574.810 kb on - strand at 3574.842 kb on - strand at 3574.891 kb on - strand, within MPMX20_03394 at 3574.939 kb on + strand, within MPMX20_03394 at 3574.961 kb on - strand, within MPMX20_03394 at 3574.968 kb on + strand, within MPMX20_03394 at 3575.005 kb on - strand, within MPMX20_03394 at 3575.097 kb on + strand, within MPMX20_03394 at 3575.204 kb on + strand, within MPMX20_03394 at 3575.376 kb on + strand, within MPMX20_03394 at 3575.436 kb on - strand, within MPMX20_03394 at 3575.871 kb on - strand at 3575.877 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.891 kb on + strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.899 kb on - strand at 3575.919 kb on + strand at 3575.927 kb on - strand at 3575.932 kb on - strand at 3575.957 kb on + strand at 3575.957 kb on + strand at 3575.965 kb on + strand at 3576.089 kb on + strand at 3576.089 kb on + strand at 3576.119 kb on + strand at 3576.127 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.137 kb on - strand at 3576.158 kb on + strand at 3576.229 kb on - strand, within MPMX20_03395 at 3576.343 kb on - strand, within MPMX20_03395 at 3576.385 kb on - strand, within MPMX20_03395 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.418 kb on + strand, within MPMX20_03395 at 3576.426 kb on - strand, within MPMX20_03395 at 3576.585 kb on - strand, within MPMX20_03395 at 3576.609 kb on + strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.638 kb on - strand, within MPMX20_03395 at 3576.737 kb on - strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.776 kb on + strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395 at 3576.784 kb on - strand, within MPMX20_03395
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,574,810 - -2.3 3,574,842 - +0.2 3,574,891 - MPMX20_03394 0.10 -1.9 3,574,939 + MPMX20_03394 0.15 +1.3 3,574,961 - MPMX20_03394 0.17 -1.6 3,574,968 + MPMX20_03394 0.18 +0.9 3,575,005 - MPMX20_03394 0.22 -2.1 3,575,097 + MPMX20_03394 0.31 +1.9 3,575,204 + MPMX20_03394 0.42 +0.9 3,575,376 + MPMX20_03394 0.59 -0.7 3,575,436 - MPMX20_03394 0.65 -2.5 3,575,871 - +1.3 3,575,877 + -0.7 3,575,891 + -0.6 3,575,891 + +1.3 3,575,891 + +1.3 3,575,891 + +1.3 3,575,891 + -0.5 3,575,891 + +1.3 3,575,891 + +1.3 3,575,891 + +0.4 3,575,891 + +0.7 3,575,891 + +0.3 3,575,891 + +0.4 3,575,891 + -2.2 3,575,891 + -2.0 3,575,891 + -0.7 3,575,899 - -0.0 3,575,899 - -0.2 3,575,899 - -0.5 3,575,899 - -1.0 3,575,899 - -0.1 3,575,899 - -0.6 3,575,899 - +0.5 3,575,899 - -0.9 3,575,899 - -0.6 3,575,899 - -0.9 3,575,899 - -2.3 3,575,899 - +1.2 3,575,899 - -1.8 3,575,899 - -0.7 3,575,899 - +0.0 3,575,899 - +0.4 3,575,899 - -0.3 3,575,919 + +0.3 3,575,927 - +0.5 3,575,932 - +0.1 3,575,957 + -2.3 3,575,957 + -1.3 3,575,965 + +1.3 3,576,089 + -0.9 3,576,089 + +0.9 3,576,119 + +2.9 3,576,127 - +0.6 3,576,137 - -1.6 3,576,137 - +1.1 3,576,137 - +1.3 3,576,137 - +0.2 3,576,158 + +2.9 3,576,229 - MPMX20_03395 0.13 -0.4 3,576,343 - MPMX20_03395 0.22 -0.6 3,576,385 - MPMX20_03395 0.26 -0.1 3,576,418 + MPMX20_03395 0.29 -0.6 3,576,418 + MPMX20_03395 0.29 -0.2 3,576,426 - MPMX20_03395 0.29 -0.4 3,576,585 - MPMX20_03395 0.43 -0.9 3,576,609 + MPMX20_03395 0.45 -0.6 3,576,638 - MPMX20_03395 0.48 -0.8 3,576,638 - MPMX20_03395 0.48 -1.0 3,576,737 - MPMX20_03395 0.56 +0.8 3,576,776 + MPMX20_03395 0.59 -0.9 3,576,776 + MPMX20_03395 0.59 +2.9 3,576,776 + MPMX20_03395 0.59 -0.0 3,576,776 + MPMX20_03395 0.59 -0.4 3,576,776 + MPMX20_03395 0.59 +0.7 3,576,776 + MPMX20_03395 0.59 -0.7 3,576,776 + MPMX20_03395 0.59 +0.3 3,576,784 - MPMX20_03395 0.60 -0.7 3,576,784 - MPMX20_03395 0.60 +1.1 3,576,784 - MPMX20_03395 0.60 -2.9
Or see this region's nucleotide sequence