Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03394

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03393 and MPMX20_03394 are separated by 26 nucleotidesMPMX20_03394 and MPMX20_03395 are separated by 293 nucleotides MPMX20_03393: MPMX20_03393 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 3,573,642 to 3,574,760 _03393 MPMX20_03394: MPMX20_03394 - Cytoskeleton protein RodZ, at 3,574,787 to 3,575,788 _03394 MPMX20_03395: MPMX20_03395 - Dual-specificity RNA methyltransferase RlmN, at 3,576,082 to 3,577,248 _03395 Position (kb) 3574 3575 3576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3574.810 kb on - strandat 3574.842 kb on - strandat 3574.891 kb on - strand, within MPMX20_03394at 3574.939 kb on + strand, within MPMX20_03394at 3574.961 kb on - strand, within MPMX20_03394at 3574.968 kb on + strand, within MPMX20_03394at 3575.005 kb on - strand, within MPMX20_03394at 3575.097 kb on + strand, within MPMX20_03394at 3575.204 kb on + strand, within MPMX20_03394at 3575.376 kb on + strand, within MPMX20_03394at 3575.436 kb on - strand, within MPMX20_03394at 3575.871 kb on - strandat 3575.877 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.891 kb on + strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.899 kb on - strandat 3575.919 kb on + strandat 3575.927 kb on - strandat 3575.932 kb on - strandat 3575.957 kb on + strandat 3575.957 kb on + strandat 3575.965 kb on + strandat 3576.089 kb on + strandat 3576.089 kb on + strandat 3576.119 kb on + strandat 3576.127 kb on - strandat 3576.137 kb on - strandat 3576.137 kb on - strandat 3576.137 kb on - strandat 3576.137 kb on - strandat 3576.158 kb on + strandat 3576.229 kb on - strand, within MPMX20_03395at 3576.343 kb on - strand, within MPMX20_03395at 3576.385 kb on - strand, within MPMX20_03395at 3576.418 kb on + strand, within MPMX20_03395at 3576.418 kb on + strand, within MPMX20_03395at 3576.426 kb on - strand, within MPMX20_03395at 3576.585 kb on - strand, within MPMX20_03395at 3576.609 kb on + strand, within MPMX20_03395at 3576.638 kb on - strand, within MPMX20_03395at 3576.638 kb on - strand, within MPMX20_03395at 3576.737 kb on - strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.776 kb on + strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395at 3576.784 kb on - strand, within MPMX20_03395

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,574,810 - -2.3
3,574,842 - +0.2
3,574,891 - MPMX20_03394 0.10 -1.9
3,574,939 + MPMX20_03394 0.15 +1.3
3,574,961 - MPMX20_03394 0.17 -1.6
3,574,968 + MPMX20_03394 0.18 +0.9
3,575,005 - MPMX20_03394 0.22 -2.1
3,575,097 + MPMX20_03394 0.31 +1.9
3,575,204 + MPMX20_03394 0.42 +0.9
3,575,376 + MPMX20_03394 0.59 -0.7
3,575,436 - MPMX20_03394 0.65 -2.5
3,575,871 - +1.3
3,575,877 + -0.7
3,575,891 + -0.6
3,575,891 + +1.3
3,575,891 + +1.3
3,575,891 + +1.3
3,575,891 + -0.5
3,575,891 + +1.3
3,575,891 + +1.3
3,575,891 + +0.4
3,575,891 + +0.7
3,575,891 + +0.3
3,575,891 + +0.4
3,575,891 + -2.2
3,575,891 + -2.0
3,575,891 + -0.7
3,575,899 - -0.0
3,575,899 - -0.2
3,575,899 - -0.5
3,575,899 - -1.0
3,575,899 - -0.1
3,575,899 - -0.6
3,575,899 - +0.5
3,575,899 - -0.9
3,575,899 - -0.6
3,575,899 - -0.9
3,575,899 - -2.3
3,575,899 - +1.2
3,575,899 - -1.8
3,575,899 - -0.7
3,575,899 - +0.0
3,575,899 - +0.4
3,575,899 - -0.3
3,575,919 + +0.3
3,575,927 - +0.5
3,575,932 - +0.1
3,575,957 + -2.3
3,575,957 + -1.3
3,575,965 + +1.3
3,576,089 + -0.9
3,576,089 + +0.9
3,576,119 + +2.9
3,576,127 - +0.6
3,576,137 - -1.6
3,576,137 - +1.1
3,576,137 - +1.3
3,576,137 - +0.2
3,576,158 + +2.9
3,576,229 - MPMX20_03395 0.13 -0.4
3,576,343 - MPMX20_03395 0.22 -0.6
3,576,385 - MPMX20_03395 0.26 -0.1
3,576,418 + MPMX20_03395 0.29 -0.6
3,576,418 + MPMX20_03395 0.29 -0.2
3,576,426 - MPMX20_03395 0.29 -0.4
3,576,585 - MPMX20_03395 0.43 -0.9
3,576,609 + MPMX20_03395 0.45 -0.6
3,576,638 - MPMX20_03395 0.48 -0.8
3,576,638 - MPMX20_03395 0.48 -1.0
3,576,737 - MPMX20_03395 0.56 +0.8
3,576,776 + MPMX20_03395 0.59 -0.9
3,576,776 + MPMX20_03395 0.59 +2.9
3,576,776 + MPMX20_03395 0.59 -0.0
3,576,776 + MPMX20_03395 0.59 -0.4
3,576,776 + MPMX20_03395 0.59 +0.7
3,576,776 + MPMX20_03395 0.59 -0.7
3,576,776 + MPMX20_03395 0.59 +0.3
3,576,784 - MPMX20_03395 0.60 -0.7
3,576,784 - MPMX20_03395 0.60 +1.1
3,576,784 - MPMX20_03395 0.60 -2.9

Or see this region's nucleotide sequence