Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03376

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03375 and MPMX20_03376 are separated by 278 nucleotidesMPMX20_03376 and MPMX20_03377 are separated by 156 nucleotidesMPMX20_03377 and MPMX20_03378 are separated by 54 nucleotides MPMX20_03375: MPMX20_03375 - Putative 3-oxopropanoate dehydrogenase, at 3,553,712 to 3,555,217 _03375 MPMX20_03376: MPMX20_03376 - HTH-type transcriptional regulator MurR, at 3,555,496 to 3,556,326 _03376 MPMX20_03377: MPMX20_03377 - hypothetical protein, at 3,556,483 to 3,556,680 _03377 MPMX20_03378: MPMX20_03378 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 3,556,735 to 3,557,523 _03378 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3554.500 kb on + strand, within MPMX20_03375at 3554.536 kb on + strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.544 kb on - strand, within MPMX20_03375at 3554.572 kb on + strand, within MPMX20_03375at 3554.611 kb on + strand, within MPMX20_03375at 3554.646 kb on - strand, within MPMX20_03375at 3554.832 kb on + strand, within MPMX20_03375at 3554.849 kb on + strand, within MPMX20_03375at 3554.904 kb on - strand, within MPMX20_03375at 3554.969 kb on - strand, within MPMX20_03375at 3554.974 kb on - strand, within MPMX20_03375at 3555.011 kb on + strand, within MPMX20_03375at 3555.019 kb on - strand, within MPMX20_03375at 3555.024 kb on + strand, within MPMX20_03375at 3555.097 kb on + strandat 3555.135 kb on - strandat 3555.151 kb on - strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.166 kb on + strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.174 kb on - strandat 3555.211 kb on + strandat 3555.218 kb on - strandat 3555.233 kb on + strandat 3555.233 kb on + strandat 3555.520 kb on - strandat 3555.520 kb on - strandat 3555.556 kb on - strandat 3555.589 kb on + strand, within MPMX20_03376at 3555.589 kb on + strand, within MPMX20_03376at 3555.858 kb on - strand, within MPMX20_03376at 3555.898 kb on - strand, within MPMX20_03376at 3555.946 kb on + strand, within MPMX20_03376at 3555.967 kb on - strand, within MPMX20_03376at 3555.990 kb on - strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.010 kb on + strand, within MPMX20_03376at 3556.018 kb on - strand, within MPMX20_03376at 3556.069 kb on + strand, within MPMX20_03376at 3556.106 kb on + strand, within MPMX20_03376at 3556.168 kb on - strand, within MPMX20_03376at 3556.272 kb on - strandat 3556.359 kb on + strandat 3556.503 kb on + strand, within MPMX20_03377at 3556.619 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.634 kb on + strand, within MPMX20_03377at 3556.653 kb on + strand, within MPMX20_03377at 3556.691 kb on + strandat 3556.710 kb on + strandat 3556.778 kb on + strandat 3556.823 kb on - strand, within MPMX20_03378at 3556.868 kb on + strand, within MPMX20_03378at 3556.910 kb on - strand, within MPMX20_03378at 3556.924 kb on - strand, within MPMX20_03378at 3556.932 kb on - strand, within MPMX20_03378at 3556.941 kb on + strand, within MPMX20_03378at 3556.949 kb on - strand, within MPMX20_03378at 3556.985 kb on - strand, within MPMX20_03378at 3557.071 kb on + strand, within MPMX20_03378at 3557.127 kb on + strand, within MPMX20_03378at 3557.154 kb on + strand, within MPMX20_03378at 3557.277 kb on + strand, within MPMX20_03378at 3557.285 kb on - strand, within MPMX20_03378

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,554,500 + MPMX20_03375 0.52 -0.3
3,554,536 + MPMX20_03375 0.55 -0.0
3,554,544 - MPMX20_03375 0.55 -0.6
3,554,544 - MPMX20_03375 0.55 -0.5
3,554,572 + MPMX20_03375 0.57 -0.8
3,554,611 + MPMX20_03375 0.60 +0.3
3,554,646 - MPMX20_03375 0.62 -2.1
3,554,832 + MPMX20_03375 0.74 +1.9
3,554,849 + MPMX20_03375 0.75 +3.5
3,554,904 - MPMX20_03375 0.79 +0.2
3,554,969 - MPMX20_03375 0.83 -2.4
3,554,974 - MPMX20_03375 0.84 +0.9
3,555,011 + MPMX20_03375 0.86 -0.4
3,555,019 - MPMX20_03375 0.87 +0.2
3,555,024 + MPMX20_03375 0.87 -2.0
3,555,097 + +0.1
3,555,135 - -0.1
3,555,151 - -1.0
3,555,166 + -1.0
3,555,166 + +0.4
3,555,166 + +1.0
3,555,166 + -0.4
3,555,174 - +1.0
3,555,174 - +2.9
3,555,174 - -0.0
3,555,174 - +2.3
3,555,211 + +0.8
3,555,218 - -0.1
3,555,233 + +1.3
3,555,233 + -0.9
3,555,520 - -0.1
3,555,520 - +0.0
3,555,556 - +1.1
3,555,589 + MPMX20_03376 0.11 -1.6
3,555,589 + MPMX20_03376 0.11 -2.5
3,555,858 - MPMX20_03376 0.44 +2.9
3,555,898 - MPMX20_03376 0.48 -0.8
3,555,946 + MPMX20_03376 0.54 -3.1
3,555,967 - MPMX20_03376 0.57 +0.1
3,555,990 - MPMX20_03376 0.59 -1.3
3,556,010 + MPMX20_03376 0.62 -0.3
3,556,010 + MPMX20_03376 0.62 -1.2
3,556,018 - MPMX20_03376 0.63 -1.1
3,556,069 + MPMX20_03376 0.69 -1.2
3,556,106 + MPMX20_03376 0.73 -0.1
3,556,168 - MPMX20_03376 0.81 -1.1
3,556,272 - +2.1
3,556,359 + -1.1
3,556,503 + MPMX20_03377 0.10 -1.5
3,556,619 + MPMX20_03377 0.69 -0.5
3,556,634 + MPMX20_03377 0.76 +0.5
3,556,634 + MPMX20_03377 0.76 +0.5
3,556,634 + MPMX20_03377 0.76 +1.9
3,556,653 + MPMX20_03377 0.86 -1.1
3,556,691 + +1.9
3,556,710 + +0.1
3,556,778 + -1.8
3,556,823 - MPMX20_03378 0.11 -0.8
3,556,868 + MPMX20_03378 0.17 +0.3
3,556,910 - MPMX20_03378 0.22 -0.1
3,556,924 - MPMX20_03378 0.24 +1.0
3,556,932 - MPMX20_03378 0.25 -0.5
3,556,941 + MPMX20_03378 0.26 +0.7
3,556,949 - MPMX20_03378 0.27 +1.3
3,556,985 - MPMX20_03378 0.32 -0.9
3,557,071 + MPMX20_03378 0.43 -0.0
3,557,127 + MPMX20_03378 0.50 +0.6
3,557,154 + MPMX20_03378 0.53 +3.2
3,557,277 + MPMX20_03378 0.69 -1.6
3,557,285 - MPMX20_03378 0.70 +0.9

Or see this region's nucleotide sequence