Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03308

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03307 and MPMX20_03308 are separated by 163 nucleotidesMPMX20_03308 and MPMX20_03309 are separated by 317 nucleotidesMPMX20_03309 and MPMX20_03310 are separated by 44 nucleotides MPMX20_03307: MPMX20_03307 - Sulfate transporter CysZ, at 3,476,239 to 3,477,000 _03307 MPMX20_03308: MPMX20_03308 - Cysteine synthase A, at 3,477,164 to 3,478,135 _03308 MPMX20_03309: MPMX20_03309 - Phosphocarrier protein HPr, at 3,478,453 to 3,478,710 _03309 MPMX20_03310: MPMX20_03310 - Phosphoenolpyruvate-protein phosphotransferase, at 3,478,755 to 3,480,482 _03310 Position (kb) 3477 3478 3479Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 3476.164 kb on - strandat 3476.164 kb on - strandat 3476.164 kb on - strandat 3476.166 kb on + strandat 3476.166 kb on + strandat 3476.166 kb on + strandat 3476.224 kb on + strandat 3476.302 kb on - strandat 3476.302 kb on - strandat 3476.343 kb on - strand, within MPMX20_03307at 3476.394 kb on - strand, within MPMX20_03307at 3476.431 kb on + strand, within MPMX20_03307at 3476.431 kb on + strand, within MPMX20_03307at 3476.529 kb on + strand, within MPMX20_03307at 3476.578 kb on + strand, within MPMX20_03307at 3476.586 kb on - strand, within MPMX20_03307at 3476.588 kb on + strand, within MPMX20_03307at 3476.743 kb on + strand, within MPMX20_03307at 3476.772 kb on - strand, within MPMX20_03307at 3476.773 kb on - strand, within MPMX20_03307at 3476.773 kb on - strand, within MPMX20_03307at 3476.787 kb on - strand, within MPMX20_03307at 3476.787 kb on - strand, within MPMX20_03307at 3476.808 kb on + strand, within MPMX20_03307at 3476.828 kb on - strand, within MPMX20_03307at 3476.842 kb on - strand, within MPMX20_03307at 3476.878 kb on + strand, within MPMX20_03307at 3476.886 kb on - strand, within MPMX20_03307at 3476.905 kb on - strand, within MPMX20_03307at 3476.910 kb on + strand, within MPMX20_03307at 3476.951 kb on + strandat 3476.953 kb on - strandat 3477.025 kb on + strandat 3477.033 kb on - strandat 3477.073 kb on + strandat 3477.073 kb on + strandat 3477.073 kb on + strandat 3477.073 kb on + strandat 3477.081 kb on - strandat 3477.081 kb on - strandat 3477.081 kb on - strandat 3477.100 kb on + strandat 3477.108 kb on - strandat 3477.108 kb on - strandat 3477.150 kb on + strandat 3477.150 kb on + strandat 3477.150 kb on + strandat 3477.150 kb on + strandat 3477.150 kb on + strandat 3477.158 kb on - strandat 3477.158 kb on - strandat 3477.158 kb on - strandat 3477.158 kb on - strandat 3477.209 kb on + strandat 3477.217 kb on - strandat 3477.217 kb on - strandat 3477.217 kb on - strandat 3477.228 kb on - strandat 3477.392 kb on - strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.394 kb on + strand, within MPMX20_03308at 3477.402 kb on - strand, within MPMX20_03308at 3477.402 kb on - strand, within MPMX20_03308at 3477.402 kb on - strand, within MPMX20_03308at 3477.402 kb on - strand, within MPMX20_03308at 3477.402 kb on - strand, within MPMX20_03308at 3477.425 kb on - strand, within MPMX20_03308at 3477.425 kb on - strand, within MPMX20_03308at 3477.425 kb on - strand, within MPMX20_03308at 3477.518 kb on + strand, within MPMX20_03308at 3477.628 kb on + strand, within MPMX20_03308at 3477.699 kb on + strand, within MPMX20_03308at 3477.699 kb on + strand, within MPMX20_03308at 3477.704 kb on + strand, within MPMX20_03308at 3477.712 kb on - strand, within MPMX20_03308at 3477.760 kb on - strand, within MPMX20_03308at 3477.781 kb on - strand, within MPMX20_03308at 3477.796 kb on - strand, within MPMX20_03308at 3477.820 kb on + strand, within MPMX20_03308at 3477.828 kb on - strand, within MPMX20_03308at 3477.876 kb on + strand, within MPMX20_03308at 3477.902 kb on + strand, within MPMX20_03308at 3477.947 kb on - strand, within MPMX20_03308at 3478.077 kb on - strandat 3478.089 kb on + strandat 3478.130 kb on + strandat 3478.221 kb on + strandat 3478.404 kb on + strandat 3478.412 kb on - strandat 3478.489 kb on + strand, within MPMX20_03309at 3478.490 kb on + strand, within MPMX20_03309at 3478.607 kb on + strand, within MPMX20_03309at 3478.615 kb on - strand, within MPMX20_03309at 3478.615 kb on - strand, within MPMX20_03309at 3478.623 kb on + strand, within MPMX20_03309at 3478.651 kb on + strand, within MPMX20_03309at 3478.675 kb on - strand, within MPMX20_03309at 3478.744 kb on + strandat 3478.928 kb on + strand, within MPMX20_03310at 3478.969 kb on + strand, within MPMX20_03310at 3479.045 kb on - strand, within MPMX20_03310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
remove
3,476,164 - -0.9
3,476,164 - -1.0
3,476,164 - -0.2
3,476,166 + +0.7
3,476,166 + -0.8
3,476,166 + +0.5
3,476,224 + +2.3
3,476,302 - +1.0
3,476,302 - -1.4
3,476,343 - MPMX20_03307 0.14 +0.7
3,476,394 - MPMX20_03307 0.20 +0.3
3,476,431 + MPMX20_03307 0.25 -0.8
3,476,431 + MPMX20_03307 0.25 +0.5
3,476,529 + MPMX20_03307 0.38 +0.6
3,476,578 + MPMX20_03307 0.44 +0.2
3,476,586 - MPMX20_03307 0.46 +1.9
3,476,588 + MPMX20_03307 0.46 -0.7
3,476,743 + MPMX20_03307 0.66 +0.1
3,476,772 - MPMX20_03307 0.70 +7.6
3,476,773 - MPMX20_03307 0.70 +0.5
3,476,773 - MPMX20_03307 0.70 +8.0
3,476,787 - MPMX20_03307 0.72 +0.3
3,476,787 - MPMX20_03307 0.72 -0.3
3,476,808 + MPMX20_03307 0.75 -0.6
3,476,828 - MPMX20_03307 0.77 +0.6
3,476,842 - MPMX20_03307 0.79 -0.6
3,476,878 + MPMX20_03307 0.84 +1.3
3,476,886 - MPMX20_03307 0.85 -0.0
3,476,905 - MPMX20_03307 0.87 +2.3
3,476,910 + MPMX20_03307 0.88 -1.4
3,476,951 + +1.0
3,476,953 - -0.7
3,477,025 + +1.9
3,477,033 - +0.4
3,477,073 + +1.9
3,477,073 + -0.5
3,477,073 + -0.1
3,477,073 + -2.0
3,477,081 - +2.9
3,477,081 - +0.3
3,477,081 - -0.9
3,477,100 + -1.9
3,477,108 - +0.7
3,477,108 - +0.6
3,477,150 + +2.2
3,477,150 + -1.6
3,477,150 + -0.8
3,477,150 + -0.1
3,477,150 + -1.0
3,477,158 - +0.1
3,477,158 - -0.7
3,477,158 - -0.6
3,477,158 - -0.5
3,477,209 + +0.3
3,477,217 - +0.1
3,477,217 - +0.3
3,477,217 - +2.4
3,477,228 - -1.4
3,477,392 - MPMX20_03308 0.23 -0.6
3,477,394 + MPMX20_03308 0.24 +0.1
3,477,394 + MPMX20_03308 0.24 +0.2
3,477,394 + MPMX20_03308 0.24 +0.9
3,477,394 + MPMX20_03308 0.24 +1.3
3,477,394 + MPMX20_03308 0.24 +0.6
3,477,394 + MPMX20_03308 0.24 -1.8
3,477,394 + MPMX20_03308 0.24 -0.7
3,477,402 - MPMX20_03308 0.24 +0.3
3,477,402 - MPMX20_03308 0.24 +0.1
3,477,402 - MPMX20_03308 0.24 -0.4
3,477,402 - MPMX20_03308 0.24 -1.6
3,477,402 - MPMX20_03308 0.24 -0.7
3,477,425 - MPMX20_03308 0.27 -2.7
3,477,425 - MPMX20_03308 0.27 -1.8
3,477,425 - MPMX20_03308 0.27 +1.9
3,477,518 + MPMX20_03308 0.36 +0.1
3,477,628 + MPMX20_03308 0.48 +1.3
3,477,699 + MPMX20_03308 0.55 +0.6
3,477,699 + MPMX20_03308 0.55 -1.3
3,477,704 + MPMX20_03308 0.56 +0.9
3,477,712 - MPMX20_03308 0.56 -1.9
3,477,760 - MPMX20_03308 0.61 -0.1
3,477,781 - MPMX20_03308 0.63 +0.3
3,477,796 - MPMX20_03308 0.65 -1.7
3,477,820 + MPMX20_03308 0.67 +1.9
3,477,828 - MPMX20_03308 0.68 +1.3
3,477,876 + MPMX20_03308 0.73 -0.3
3,477,902 + MPMX20_03308 0.76 -1.5
3,477,947 - MPMX20_03308 0.81 +0.3
3,478,077 - -1.5
3,478,089 + -0.8
3,478,130 + -0.8
3,478,221 + +1.3
3,478,404 + +1.6
3,478,412 - +1.9
3,478,489 + MPMX20_03309 0.14 +1.3
3,478,490 + MPMX20_03309 0.14 +1.3
3,478,607 + MPMX20_03309 0.60 -1.3
3,478,615 - MPMX20_03309 0.63 +1.9
3,478,615 - MPMX20_03309 0.63 +1.9
3,478,623 + MPMX20_03309 0.66 -0.4
3,478,651 + MPMX20_03309 0.77 -0.3
3,478,675 - MPMX20_03309 0.86 +0.9
3,478,744 + +2.2
3,478,928 + MPMX20_03310 0.10 +2.9
3,478,969 + MPMX20_03310 0.12 +0.9
3,479,045 - MPMX20_03310 0.17 +0.3

Or see this region's nucleotide sequence