Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03254 and MPMX20_03255 are separated by 67 nucleotides MPMX20_03255 and MPMX20_03256 are separated by 114 nucleotides
MPMX20_03254: MPMX20_03254 - USG-1 protein, at 3,423,590 to 3,424,603
_03254
MPMX20_03255: MPMX20_03255 - Erythronate-4-phosphate dehydrogenase, at 3,424,671 to 3,425,807
_03255
MPMX20_03256: MPMX20_03256 - Flagellar regulator flk, at 3,425,922 to 3,426,926
_03256
Position (kb)
3424
3425
3426 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3423.715 kb on + strand, within MPMX20_03254 at 3423.758 kb on - strand, within MPMX20_03254 at 3423.885 kb on + strand, within MPMX20_03254 at 3424.059 kb on + strand, within MPMX20_03254 at 3424.359 kb on - strand, within MPMX20_03254 at 3424.416 kb on - strand, within MPMX20_03254 at 3424.438 kb on - strand, within MPMX20_03254 at 3424.502 kb on + strand at 3424.510 kb on - strand at 3424.512 kb on + strand at 3424.541 kb on + strand at 3424.544 kb on - strand at 3424.546 kb on + strand at 3424.546 kb on + strand at 3424.546 kb on + strand at 3424.547 kb on + strand at 3424.554 kb on - strand at 3424.653 kb on - strand at 3424.900 kb on - strand, within MPMX20_03255 at 3424.901 kb on - strand, within MPMX20_03255 at 3424.910 kb on + strand, within MPMX20_03255 at 3424.910 kb on + strand, within MPMX20_03255 at 3425.038 kb on - strand, within MPMX20_03255 at 3425.038 kb on - strand, within MPMX20_03255 at 3425.067 kb on - strand, within MPMX20_03255 at 3425.076 kb on - strand, within MPMX20_03255 at 3425.076 kb on - strand, within MPMX20_03255 at 3425.083 kb on + strand, within MPMX20_03255 at 3425.086 kb on - strand, within MPMX20_03255 at 3425.090 kb on + strand, within MPMX20_03255 at 3425.091 kb on - strand, within MPMX20_03255 at 3425.159 kb on + strand, within MPMX20_03255 at 3425.212 kb on + strand, within MPMX20_03255 at 3425.226 kb on + strand, within MPMX20_03255 at 3425.277 kb on - strand, within MPMX20_03255 at 3425.318 kb on + strand, within MPMX20_03255 at 3425.379 kb on - strand, within MPMX20_03255 at 3425.391 kb on + strand, within MPMX20_03255 at 3425.391 kb on + strand, within MPMX20_03255 at 3425.463 kb on - strand, within MPMX20_03255 at 3425.484 kb on - strand, within MPMX20_03255 at 3425.494 kb on - strand, within MPMX20_03255 at 3425.501 kb on - strand, within MPMX20_03255 at 3425.563 kb on + strand, within MPMX20_03255 at 3425.681 kb on + strand, within MPMX20_03255 at 3425.703 kb on - strand at 3425.727 kb on + strand at 3425.727 kb on + strand at 3425.735 kb on - strand at 3425.735 kb on - strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.737 kb on + strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.745 kb on - strand at 3425.757 kb on + strand at 3425.884 kb on + strand at 3425.896 kb on + strand at 3426.004 kb on + strand at 3426.004 kb on + strand at 3426.021 kb on + strand at 3426.077 kb on + strand, within MPMX20_03256 at 3426.123 kb on + strand, within MPMX20_03256 at 3426.123 kb on + strand, within MPMX20_03256 at 3426.123 kb on + strand, within MPMX20_03256 at 3426.131 kb on - strand, within MPMX20_03256 at 3426.181 kb on - strand, within MPMX20_03256 at 3426.238 kb on - strand, within MPMX20_03256 at 3426.306 kb on - strand, within MPMX20_03256 at 3426.313 kb on + strand, within MPMX20_03256 at 3426.313 kb on + strand, within MPMX20_03256 at 3426.321 kb on - strand, within MPMX20_03256 at 3426.323 kb on + strand, within MPMX20_03256 at 3426.333 kb on + strand, within MPMX20_03256 at 3426.415 kb on - strand, within MPMX20_03256 at 3426.565 kb on + strand, within MPMX20_03256 at 3426.573 kb on - strand, within MPMX20_03256 at 3426.601 kb on + strand, within MPMX20_03256 at 3426.711 kb on + strand, within MPMX20_03256 at 3426.711 kb on + strand, within MPMX20_03256 at 3426.719 kb on - strand, within MPMX20_03256 at 3426.728 kb on + strand, within MPMX20_03256 at 3426.728 kb on + strand, within MPMX20_03256 at 3426.729 kb on + strand, within MPMX20_03256 at 3426.736 kb on - strand, within MPMX20_03256 at 3426.736 kb on - strand, within MPMX20_03256 at 3426.807 kb on - strand, within MPMX20_03256
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,423,715 + MPMX20_03254 0.12 +1.9 3,423,758 - MPMX20_03254 0.17 +0.7 3,423,885 + MPMX20_03254 0.29 +4.9 3,424,059 + MPMX20_03254 0.46 +0.1 3,424,359 - MPMX20_03254 0.76 -0.4 3,424,416 - MPMX20_03254 0.81 +0.7 3,424,438 - MPMX20_03254 0.84 +0.4 3,424,502 + +1.3 3,424,510 - -0.9 3,424,512 + -1.9 3,424,541 + +0.9 3,424,544 - -0.4 3,424,546 + -2.0 3,424,546 + +0.9 3,424,546 + -0.3 3,424,547 + +0.3 3,424,554 - -0.5 3,424,653 - +1.2 3,424,900 - MPMX20_03255 0.20 -0.8 3,424,901 - MPMX20_03255 0.20 -0.1 3,424,910 + MPMX20_03255 0.21 -1.5 3,424,910 + MPMX20_03255 0.21 -1.5 3,425,038 - MPMX20_03255 0.32 +0.1 3,425,038 - MPMX20_03255 0.32 -0.0 3,425,067 - MPMX20_03255 0.35 -1.6 3,425,076 - MPMX20_03255 0.36 -0.5 3,425,076 - MPMX20_03255 0.36 -0.8 3,425,083 + MPMX20_03255 0.36 -0.8 3,425,086 - MPMX20_03255 0.36 +1.9 3,425,090 + MPMX20_03255 0.37 -2.2 3,425,091 - MPMX20_03255 0.37 +0.3 3,425,159 + MPMX20_03255 0.43 -1.1 3,425,212 + MPMX20_03255 0.48 -1.9 3,425,226 + MPMX20_03255 0.49 +0.6 3,425,277 - MPMX20_03255 0.53 -0.7 3,425,318 + MPMX20_03255 0.57 -1.3 3,425,379 - MPMX20_03255 0.62 -2.0 3,425,391 + MPMX20_03255 0.63 +0.9 3,425,391 + MPMX20_03255 0.63 -0.3 3,425,463 - MPMX20_03255 0.70 -0.3 3,425,484 - MPMX20_03255 0.72 -1.3 3,425,494 - MPMX20_03255 0.72 -0.4 3,425,501 - MPMX20_03255 0.73 -1.3 3,425,563 + MPMX20_03255 0.78 -0.9 3,425,681 + MPMX20_03255 0.89 +1.9 3,425,703 - -0.3 3,425,727 + +0.1 3,425,727 + +1.3 3,425,735 - +2.6 3,425,735 - -1.4 3,425,737 + -2.1 3,425,737 + +0.5 3,425,737 + -2.2 3,425,737 + -1.7 3,425,737 + -0.7 3,425,737 + -1.2 3,425,737 + +0.8 3,425,737 + -1.3 3,425,745 - +0.1 3,425,745 - -0.8 3,425,745 - -3.2 3,425,745 - -1.0 3,425,745 - +0.1 3,425,745 - +0.6 3,425,745 - -1.1 3,425,745 - +2.6 3,425,745 - +0.0 3,425,745 - +1.7 3,425,745 - +1.7 3,425,745 - -1.7 3,425,757 + -0.2 3,425,884 + +0.3 3,425,896 + -1.3 3,426,004 + +0.1 3,426,004 + -1.1 3,426,021 + -0.9 3,426,077 + MPMX20_03256 0.15 -1.1 3,426,123 + MPMX20_03256 0.20 +1.9 3,426,123 + MPMX20_03256 0.20 +1.3 3,426,123 + MPMX20_03256 0.20 -0.6 3,426,131 - MPMX20_03256 0.21 -0.7 3,426,181 - MPMX20_03256 0.26 -2.7 3,426,238 - MPMX20_03256 0.31 -0.4 3,426,306 - MPMX20_03256 0.38 -1.4 3,426,313 + MPMX20_03256 0.39 +0.7 3,426,313 + MPMX20_03256 0.39 -0.7 3,426,321 - MPMX20_03256 0.40 -0.5 3,426,323 + MPMX20_03256 0.40 +1.6 3,426,333 + MPMX20_03256 0.41 +0.4 3,426,415 - MPMX20_03256 0.49 -0.1 3,426,565 + MPMX20_03256 0.64 +0.1 3,426,573 - MPMX20_03256 0.65 -0.2 3,426,601 + MPMX20_03256 0.68 +0.5 3,426,711 + MPMX20_03256 0.79 -1.3 3,426,711 + MPMX20_03256 0.79 +0.4 3,426,719 - MPMX20_03256 0.79 -1.1 3,426,728 + MPMX20_03256 0.80 +0.9 3,426,728 + MPMX20_03256 0.80 -0.8 3,426,729 + MPMX20_03256 0.80 -1.8 3,426,736 - MPMX20_03256 0.81 -0.1 3,426,736 - MPMX20_03256 0.81 -0.2 3,426,807 - MPMX20_03256 0.88 -1.3
Or see this region's nucleotide sequence