Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03245 and MPMX20_03246 are separated by 290 nucleotides MPMX20_03246 and MPMX20_03247 overlap by 1 nucleotides MPMX20_03247 and MPMX20_03248 are separated by 36 nucleotides MPMX20_03248 and MPMX20_03249 are separated by 211 nucleotides
MPMX20_03245: MPMX20_03245 - Lysine/arginine/ornithine-binding periplasmic protein, at 3,415,017 to 3,415,799
_03245
MPMX20_03246: MPMX20_03246 - Flavin prenyltransferase UbiX, at 3,416,090 to 3,416,749
_03246
MPMX20_03247: MPMX20_03247 - Amidophosphoribosyltransferase, at 3,416,749 to 3,418,266
_03247
MPMX20_03248: MPMX20_03248 - Colicin V production protein, at 3,418,303 to 3,418,791
_03248
MPMX20_03249: MPMX20_03249 - Cell division protein DedD, at 3,419,003 to 3,419,665
_03249
Position (kb)
3416
3417
3418
3419 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3415.759 kb on + strand at 3415.779 kb on + strand at 3415.801 kb on + strand at 3415.847 kb on - strand at 3415.852 kb on - strand at 3415.873 kb on + strand at 3415.909 kb on + strand at 3416.040 kb on + strand at 3416.080 kb on - strand at 3416.087 kb on + strand at 3416.095 kb on - strand at 3416.095 kb on - strand at 3416.095 kb on - strand at 3416.738 kb on - strand at 3416.743 kb on - strand at 3416.774 kb on - strand at 3416.831 kb on + strand at 3416.867 kb on + strand at 3416.899 kb on + strand at 3416.909 kb on - strand, within MPMX20_03247 at 3417.000 kb on + strand, within MPMX20_03247 at 3417.029 kb on - strand, within MPMX20_03247 at 3417.039 kb on - strand, within MPMX20_03247 at 3417.088 kb on - strand, within MPMX20_03247 at 3417.100 kb on + strand, within MPMX20_03247 at 3417.143 kb on - strand, within MPMX20_03247 at 3417.143 kb on - strand, within MPMX20_03247 at 3417.143 kb on - strand, within MPMX20_03247 at 3417.143 kb on - strand, within MPMX20_03247 at 3417.515 kb on - strand, within MPMX20_03247 at 3417.545 kb on - strand, within MPMX20_03247 at 3417.568 kb on + strand, within MPMX20_03247 at 3417.576 kb on - strand, within MPMX20_03247 at 3417.621 kb on - strand, within MPMX20_03247 at 3417.760 kb on + strand, within MPMX20_03247 at 3417.770 kb on + strand, within MPMX20_03247 at 3417.818 kb on + strand, within MPMX20_03247 at 3417.901 kb on - strand, within MPMX20_03247 at 3417.972 kb on + strand, within MPMX20_03247 at 3417.972 kb on + strand, within MPMX20_03247 at 3418.069 kb on + strand, within MPMX20_03247 at 3418.152 kb on + strand at 3418.160 kb on - strand at 3418.181 kb on + strand at 3418.189 kb on + strand at 3418.189 kb on - strand at 3418.195 kb on - strand at 3418.208 kb on - strand at 3418.208 kb on - strand at 3418.330 kb on + strand at 3418.427 kb on - strand, within MPMX20_03248 at 3418.427 kb on - strand, within MPMX20_03248 at 3418.438 kb on + strand, within MPMX20_03248 at 3418.486 kb on - strand, within MPMX20_03248 at 3418.557 kb on - strand, within MPMX20_03248 at 3418.585 kb on - strand, within MPMX20_03248 at 3418.655 kb on + strand, within MPMX20_03248 at 3418.663 kb on - strand, within MPMX20_03248 at 3418.663 kb on - strand, within MPMX20_03248 at 3418.786 kb on + strand at 3418.788 kb on + strand at 3418.943 kb on - strand at 3418.943 kb on - strand at 3418.974 kb on - strand at 3418.983 kb on + strand at 3418.983 kb on + strand at 3418.983 kb on + strand at 3418.989 kb on + strand at 3418.991 kb on - strand at 3418.991 kb on - strand at 3418.997 kb on - strand at 3419.023 kb on + strand at 3419.033 kb on + strand at 3419.070 kb on + strand, within MPMX20_03249 at 3419.092 kb on + strand, within MPMX20_03249 at 3419.092 kb on + strand, within MPMX20_03249 at 3419.161 kb on + strand, within MPMX20_03249 at 3419.161 kb on + strand, within MPMX20_03249 at 3419.161 kb on + strand, within MPMX20_03249 at 3419.169 kb on - strand, within MPMX20_03249 at 3419.169 kb on - strand, within MPMX20_03249 at 3419.169 kb on - strand, within MPMX20_03249
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,415,759 + -2.1 3,415,779 + -1.1 3,415,801 + -2.2 3,415,847 - +1.5 3,415,852 - -0.7 3,415,873 + +2.2 3,415,909 + -0.1 3,416,040 + -0.9 3,416,080 - -0.8 3,416,087 + +0.9 3,416,095 - +0.5 3,416,095 - +1.0 3,416,095 - -0.8 3,416,738 - +0.2 3,416,743 - +0.4 3,416,774 - -2.1 3,416,831 + -0.3 3,416,867 + +0.1 3,416,899 + -1.6 3,416,909 - MPMX20_03247 0.11 -1.1 3,417,000 + MPMX20_03247 0.17 +1.3 3,417,029 - MPMX20_03247 0.18 +0.5 3,417,039 - MPMX20_03247 0.19 -0.5 3,417,088 - MPMX20_03247 0.22 -1.0 3,417,100 + MPMX20_03247 0.23 +0.3 3,417,143 - MPMX20_03247 0.26 +0.3 3,417,143 - MPMX20_03247 0.26 -1.7 3,417,143 - MPMX20_03247 0.26 -1.9 3,417,143 - MPMX20_03247 0.26 -2.0 3,417,515 - MPMX20_03247 0.50 -1.0 3,417,545 - MPMX20_03247 0.52 -0.3 3,417,568 + MPMX20_03247 0.54 +1.9 3,417,576 - MPMX20_03247 0.54 -0.1 3,417,621 - MPMX20_03247 0.57 -0.2 3,417,760 + MPMX20_03247 0.67 -1.0 3,417,770 + MPMX20_03247 0.67 +0.5 3,417,818 + MPMX20_03247 0.70 -1.7 3,417,901 - MPMX20_03247 0.76 -1.0 3,417,972 + MPMX20_03247 0.81 +1.1 3,417,972 + MPMX20_03247 0.81 -2.3 3,418,069 + MPMX20_03247 0.87 -1.1 3,418,152 + -0.1 3,418,160 - -1.4 3,418,181 + -1.3 3,418,189 + -0.7 3,418,189 - +2.9 3,418,195 - -1.7 3,418,208 - -0.5 3,418,208 - -0.1 3,418,330 + -0.6 3,418,427 - MPMX20_03248 0.25 -1.9 3,418,427 - MPMX20_03248 0.25 +1.9 3,418,438 + MPMX20_03248 0.28 +0.3 3,418,486 - MPMX20_03248 0.37 -1.0 3,418,557 - MPMX20_03248 0.52 +0.3 3,418,585 - MPMX20_03248 0.58 -1.5 3,418,655 + MPMX20_03248 0.72 -1.5 3,418,663 - MPMX20_03248 0.74 -0.2 3,418,663 - MPMX20_03248 0.74 -0.2 3,418,786 + -1.1 3,418,788 + -0.6 3,418,943 - +1.9 3,418,943 - +0.1 3,418,974 - -0.5 3,418,983 + +0.6 3,418,983 + +0.5 3,418,983 + -0.0 3,418,989 + -0.9 3,418,991 - -0.6 3,418,991 - -0.8 3,418,997 - +1.5 3,419,023 + +0.6 3,419,033 + -0.7 3,419,070 + MPMX20_03249 0.10 +1.1 3,419,092 + MPMX20_03249 0.13 +1.1 3,419,092 + MPMX20_03249 0.13 -0.5 3,419,161 + MPMX20_03249 0.24 -0.8 3,419,161 + MPMX20_03249 0.24 +0.9 3,419,161 + MPMX20_03249 0.24 -1.0 3,419,169 - MPMX20_03249 0.25 +0.2 3,419,169 - MPMX20_03249 0.25 +0.2 3,419,169 - MPMX20_03249 0.25 +1.0
Or see this region's nucleotide sequence