Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03247

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03245 and MPMX20_03246 are separated by 290 nucleotidesMPMX20_03246 and MPMX20_03247 overlap by 1 nucleotidesMPMX20_03247 and MPMX20_03248 are separated by 36 nucleotidesMPMX20_03248 and MPMX20_03249 are separated by 211 nucleotides MPMX20_03245: MPMX20_03245 - Lysine/arginine/ornithine-binding periplasmic protein, at 3,415,017 to 3,415,799 _03245 MPMX20_03246: MPMX20_03246 - Flavin prenyltransferase UbiX, at 3,416,090 to 3,416,749 _03246 MPMX20_03247: MPMX20_03247 - Amidophosphoribosyltransferase, at 3,416,749 to 3,418,266 _03247 MPMX20_03248: MPMX20_03248 - Colicin V production protein, at 3,418,303 to 3,418,791 _03248 MPMX20_03249: MPMX20_03249 - Cell division protein DedD, at 3,419,003 to 3,419,665 _03249 Position (kb) 3416 3417 3418 3419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3415.759 kb on + strandat 3415.779 kb on + strandat 3415.801 kb on + strandat 3415.847 kb on - strandat 3415.852 kb on - strandat 3415.873 kb on + strandat 3415.909 kb on + strandat 3416.040 kb on + strandat 3416.080 kb on - strandat 3416.087 kb on + strandat 3416.095 kb on - strandat 3416.095 kb on - strandat 3416.095 kb on - strandat 3416.738 kb on - strandat 3416.743 kb on - strandat 3416.774 kb on - strandat 3416.831 kb on + strandat 3416.867 kb on + strandat 3416.899 kb on + strandat 3416.909 kb on - strand, within MPMX20_03247at 3417.000 kb on + strand, within MPMX20_03247at 3417.029 kb on - strand, within MPMX20_03247at 3417.039 kb on - strand, within MPMX20_03247at 3417.088 kb on - strand, within MPMX20_03247at 3417.100 kb on + strand, within MPMX20_03247at 3417.143 kb on - strand, within MPMX20_03247at 3417.143 kb on - strand, within MPMX20_03247at 3417.143 kb on - strand, within MPMX20_03247at 3417.143 kb on - strand, within MPMX20_03247at 3417.515 kb on - strand, within MPMX20_03247at 3417.545 kb on - strand, within MPMX20_03247at 3417.568 kb on + strand, within MPMX20_03247at 3417.576 kb on - strand, within MPMX20_03247at 3417.621 kb on - strand, within MPMX20_03247at 3417.760 kb on + strand, within MPMX20_03247at 3417.770 kb on + strand, within MPMX20_03247at 3417.818 kb on + strand, within MPMX20_03247at 3417.901 kb on - strand, within MPMX20_03247at 3417.972 kb on + strand, within MPMX20_03247at 3417.972 kb on + strand, within MPMX20_03247at 3418.069 kb on + strand, within MPMX20_03247at 3418.152 kb on + strandat 3418.160 kb on - strandat 3418.181 kb on + strandat 3418.189 kb on + strandat 3418.189 kb on - strandat 3418.195 kb on - strandat 3418.208 kb on - strandat 3418.208 kb on - strandat 3418.330 kb on + strandat 3418.427 kb on - strand, within MPMX20_03248at 3418.427 kb on - strand, within MPMX20_03248at 3418.438 kb on + strand, within MPMX20_03248at 3418.486 kb on - strand, within MPMX20_03248at 3418.557 kb on - strand, within MPMX20_03248at 3418.585 kb on - strand, within MPMX20_03248at 3418.655 kb on + strand, within MPMX20_03248at 3418.663 kb on - strand, within MPMX20_03248at 3418.663 kb on - strand, within MPMX20_03248at 3418.786 kb on + strandat 3418.788 kb on + strandat 3418.943 kb on - strandat 3418.943 kb on - strandat 3418.974 kb on - strandat 3418.983 kb on + strandat 3418.983 kb on + strandat 3418.983 kb on + strandat 3418.989 kb on + strandat 3418.991 kb on - strandat 3418.991 kb on - strandat 3418.997 kb on - strandat 3419.023 kb on + strandat 3419.033 kb on + strandat 3419.070 kb on + strand, within MPMX20_03249at 3419.092 kb on + strand, within MPMX20_03249at 3419.092 kb on + strand, within MPMX20_03249at 3419.161 kb on + strand, within MPMX20_03249at 3419.161 kb on + strand, within MPMX20_03249at 3419.161 kb on + strand, within MPMX20_03249at 3419.169 kb on - strand, within MPMX20_03249at 3419.169 kb on - strand, within MPMX20_03249at 3419.169 kb on - strand, within MPMX20_03249

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,415,759 + -2.1
3,415,779 + -1.1
3,415,801 + -2.2
3,415,847 - +1.5
3,415,852 - -0.7
3,415,873 + +2.2
3,415,909 + -0.1
3,416,040 + -0.9
3,416,080 - -0.8
3,416,087 + +0.9
3,416,095 - +0.5
3,416,095 - +1.0
3,416,095 - -0.8
3,416,738 - +0.2
3,416,743 - +0.4
3,416,774 - -2.1
3,416,831 + -0.3
3,416,867 + +0.1
3,416,899 + -1.6
3,416,909 - MPMX20_03247 0.11 -1.1
3,417,000 + MPMX20_03247 0.17 +1.3
3,417,029 - MPMX20_03247 0.18 +0.5
3,417,039 - MPMX20_03247 0.19 -0.5
3,417,088 - MPMX20_03247 0.22 -1.0
3,417,100 + MPMX20_03247 0.23 +0.3
3,417,143 - MPMX20_03247 0.26 +0.3
3,417,143 - MPMX20_03247 0.26 -1.7
3,417,143 - MPMX20_03247 0.26 -1.9
3,417,143 - MPMX20_03247 0.26 -2.0
3,417,515 - MPMX20_03247 0.50 -1.0
3,417,545 - MPMX20_03247 0.52 -0.3
3,417,568 + MPMX20_03247 0.54 +1.9
3,417,576 - MPMX20_03247 0.54 -0.1
3,417,621 - MPMX20_03247 0.57 -0.2
3,417,760 + MPMX20_03247 0.67 -1.0
3,417,770 + MPMX20_03247 0.67 +0.5
3,417,818 + MPMX20_03247 0.70 -1.7
3,417,901 - MPMX20_03247 0.76 -1.0
3,417,972 + MPMX20_03247 0.81 +1.1
3,417,972 + MPMX20_03247 0.81 -2.3
3,418,069 + MPMX20_03247 0.87 -1.1
3,418,152 + -0.1
3,418,160 - -1.4
3,418,181 + -1.3
3,418,189 + -0.7
3,418,189 - +2.9
3,418,195 - -1.7
3,418,208 - -0.5
3,418,208 - -0.1
3,418,330 + -0.6
3,418,427 - MPMX20_03248 0.25 -1.9
3,418,427 - MPMX20_03248 0.25 +1.9
3,418,438 + MPMX20_03248 0.28 +0.3
3,418,486 - MPMX20_03248 0.37 -1.0
3,418,557 - MPMX20_03248 0.52 +0.3
3,418,585 - MPMX20_03248 0.58 -1.5
3,418,655 + MPMX20_03248 0.72 -1.5
3,418,663 - MPMX20_03248 0.74 -0.2
3,418,663 - MPMX20_03248 0.74 -0.2
3,418,786 + -1.1
3,418,788 + -0.6
3,418,943 - +1.9
3,418,943 - +0.1
3,418,974 - -0.5
3,418,983 + +0.6
3,418,983 + +0.5
3,418,983 + -0.0
3,418,989 + -0.9
3,418,991 - -0.6
3,418,991 - -0.8
3,418,997 - +1.5
3,419,023 + +0.6
3,419,033 + -0.7
3,419,070 + MPMX20_03249 0.10 +1.1
3,419,092 + MPMX20_03249 0.13 +1.1
3,419,092 + MPMX20_03249 0.13 -0.5
3,419,161 + MPMX20_03249 0.24 -0.8
3,419,161 + MPMX20_03249 0.24 +0.9
3,419,161 + MPMX20_03249 0.24 -1.0
3,419,169 - MPMX20_03249 0.25 +0.2
3,419,169 - MPMX20_03249 0.25 +0.2
3,419,169 - MPMX20_03249 0.25 +1.0

Or see this region's nucleotide sequence