Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03141 and MPMX20_03142 are separated by 127 nucleotides MPMX20_03142 and MPMX20_03143 are separated by 77 nucleotides
MPMX20_03141: MPMX20_03141 - Murein DD-endopeptidase MepS/Murein LD-carboxypeptidase, at 3,301,527 to 3,302,096
_03141
MPMX20_03142: MPMX20_03142 - putative cyclic di-GMP phosphodiesterase PdeN, at 3,302,224 to 3,303,765
_03142
MPMX20_03143: MPMX20_03143 - hypothetical protein, at 3,303,843 to 3,305,648
_03143
Position (kb)
3302
3303
3304 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3301.330 kb on + strand at 3301.330 kb on + strand at 3301.343 kb on + strand at 3301.412 kb on + strand at 3301.412 kb on + strand at 3301.420 kb on - strand at 3301.420 kb on - strand at 3301.420 kb on - strand at 3301.425 kb on - strand at 3301.439 kb on - strand at 3301.453 kb on + strand at 3301.506 kb on + strand at 3301.506 kb on + strand at 3301.506 kb on + strand at 3301.529 kb on + strand at 3301.529 kb on + strand at 3301.565 kb on - strand at 3301.566 kb on - strand at 3301.590 kb on + strand, within MPMX20_03141 at 3301.590 kb on + strand, within MPMX20_03141 at 3301.592 kb on + strand, within MPMX20_03141 at 3301.593 kb on - strand, within MPMX20_03141 at 3301.595 kb on - strand, within MPMX20_03141 at 3301.598 kb on - strand, within MPMX20_03141 at 3301.598 kb on - strand, within MPMX20_03141 at 3301.598 kb on - strand, within MPMX20_03141 at 3301.600 kb on - strand, within MPMX20_03141 at 3301.600 kb on - strand, within MPMX20_03141 at 3301.600 kb on - strand, within MPMX20_03141 at 3301.602 kb on + strand, within MPMX20_03141 at 3301.602 kb on + strand, within MPMX20_03141 at 3301.610 kb on - strand, within MPMX20_03141 at 3301.619 kb on - strand, within MPMX20_03141 at 3301.619 kb on - strand, within MPMX20_03141 at 3301.628 kb on + strand, within MPMX20_03141 at 3301.636 kb on - strand, within MPMX20_03141 at 3301.636 kb on - strand, within MPMX20_03141 at 3301.669 kb on - strand, within MPMX20_03141 at 3301.677 kb on + strand, within MPMX20_03141 at 3301.677 kb on + strand, within MPMX20_03141 at 3301.677 kb on + strand, within MPMX20_03141 at 3301.685 kb on - strand, within MPMX20_03141 at 3301.685 kb on - strand, within MPMX20_03141 at 3301.692 kb on - strand, within MPMX20_03141 at 3301.692 kb on - strand, within MPMX20_03141 at 3301.745 kb on + strand, within MPMX20_03141 at 3301.746 kb on - strand, within MPMX20_03141 at 3301.755 kb on - strand, within MPMX20_03141 at 3301.757 kb on + strand, within MPMX20_03141 at 3301.764 kb on + strand, within MPMX20_03141 at 3301.765 kb on - strand, within MPMX20_03141 at 3301.772 kb on - strand, within MPMX20_03141 at 3301.779 kb on - strand, within MPMX20_03141 at 3301.824 kb on - strand, within MPMX20_03141 at 3301.844 kb on + strand, within MPMX20_03141 at 3301.849 kb on + strand, within MPMX20_03141 at 3301.852 kb on - strand, within MPMX20_03141 at 3301.878 kb on + strand, within MPMX20_03141 at 3301.911 kb on + strand, within MPMX20_03141 at 3301.914 kb on - strand, within MPMX20_03141 at 3301.932 kb on + strand, within MPMX20_03141 at 3301.932 kb on + strand, within MPMX20_03141 at 3301.932 kb on + strand, within MPMX20_03141 at 3301.932 kb on + strand, within MPMX20_03141 at 3301.935 kb on - strand, within MPMX20_03141 at 3301.940 kb on - strand, within MPMX20_03141 at 3301.940 kb on - strand, within MPMX20_03141 at 3301.965 kb on - strand, within MPMX20_03141 at 3301.995 kb on + strand, within MPMX20_03141 at 3301.999 kb on - strand, within MPMX20_03141 at 3302.036 kb on + strand, within MPMX20_03141 at 3302.060 kb on + strand at 3302.079 kb on + strand at 3302.219 kb on + strand at 3302.221 kb on - strand at 3302.224 kb on + strand at 3302.226 kb on - strand at 3302.227 kb on - strand at 3302.281 kb on + strand at 3302.286 kb on + strand at 3302.289 kb on - strand at 3302.298 kb on + strand at 3302.359 kb on - strand at 3302.448 kb on - strand, within MPMX20_03142 at 3302.462 kb on + strand, within MPMX20_03142 at 3302.465 kb on - strand, within MPMX20_03142 at 3302.465 kb on - strand, within MPMX20_03142 at 3302.470 kb on - strand, within MPMX20_03142 at 3302.485 kb on + strand, within MPMX20_03142 at 3302.492 kb on + strand, within MPMX20_03142 at 3302.492 kb on + strand, within MPMX20_03142 at 3302.493 kb on - strand, within MPMX20_03142 at 3302.493 kb on - strand, within MPMX20_03142 at 3302.500 kb on - strand, within MPMX20_03142 at 3302.500 kb on - strand, within MPMX20_03142 at 3302.540 kb on + strand, within MPMX20_03142 at 3302.608 kb on - strand, within MPMX20_03142 at 3302.742 kb on + strand, within MPMX20_03142 at 3302.781 kb on - strand, within MPMX20_03142 at 3302.826 kb on + strand, within MPMX20_03142 at 3302.834 kb on - strand, within MPMX20_03142 at 3302.870 kb on + strand, within MPMX20_03142 at 3302.963 kb on - strand, within MPMX20_03142 at 3302.963 kb on - strand, within MPMX20_03142 at 3302.979 kb on + strand, within MPMX20_03142 at 3303.006 kb on + strand, within MPMX20_03142 at 3303.120 kb on - strand, within MPMX20_03142 at 3303.147 kb on + strand, within MPMX20_03142 at 3303.215 kb on + strand, within MPMX20_03142 at 3303.246 kb on + strand, within MPMX20_03142 at 3303.261 kb on + strand, within MPMX20_03142 at 3303.348 kb on - strand, within MPMX20_03142 at 3303.498 kb on + strand, within MPMX20_03142 at 3303.498 kb on + strand, within MPMX20_03142 at 3303.498 kb on + strand, within MPMX20_03142 at 3303.498 kb on + strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.506 kb on - strand, within MPMX20_03142 at 3303.652 kb on - strand at 3303.657 kb on + strand at 3303.803 kb on + strand at 3303.811 kb on - strand at 3303.821 kb on + strand at 3303.821 kb on + strand at 3303.829 kb on - strand at 3303.829 kb on - strand at 3303.872 kb on + strand at 3303.881 kb on - strand at 3303.887 kb on + strand at 3303.895 kb on - strand at 3303.895 kb on - strand at 3303.977 kb on + strand at 3303.985 kb on - strand at 3303.985 kb on - strand at 3304.053 kb on + strand, within MPMX20_03143 at 3304.101 kb on - strand, within MPMX20_03143 at 3304.124 kb on + strand, within MPMX20_03143 at 3304.222 kb on + strand, within MPMX20_03143 at 3304.259 kb on - strand, within MPMX20_03143 at 3304.310 kb on - strand, within MPMX20_03143 at 3304.348 kb on + strand, within MPMX20_03143 at 3304.356 kb on - strand, within MPMX20_03143 at 3304.356 kb on - strand, within MPMX20_03143 at 3304.356 kb on - strand, within MPMX20_03143 at 3304.356 kb on - strand, within MPMX20_03143 at 3304.356 kb on - strand, within MPMX20_03143 at 3304.451 kb on + strand, within MPMX20_03143 at 3304.511 kb on - strand, within MPMX20_03143 at 3304.519 kb on + strand, within MPMX20_03143 at 3304.568 kb on - strand, within MPMX20_03143 at 3304.597 kb on + strand, within MPMX20_03143 at 3304.671 kb on + strand, within MPMX20_03143 at 3304.689 kb on + strand, within MPMX20_03143 at 3304.697 kb on - strand, within MPMX20_03143 at 3304.717 kb on + strand, within MPMX20_03143 at 3304.723 kb on - strand, within MPMX20_03143 at 3304.725 kb on - strand, within MPMX20_03143 at 3304.725 kb on - strand, within MPMX20_03143 at 3304.765 kb on - strand, within MPMX20_03143
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,301,330 + -0.9 3,301,330 + -1.1 3,301,343 + +0.4 3,301,412 + -1.0 3,301,412 + -0.2 3,301,420 - -0.6 3,301,420 - -1.6 3,301,420 - -0.4 3,301,425 - -1.1 3,301,439 - +0.8 3,301,453 + +0.8 3,301,506 + -0.3 3,301,506 + +0.6 3,301,506 + -1.2 3,301,529 + -1.8 3,301,529 + -0.3 3,301,565 - -1.7 3,301,566 - -1.6 3,301,590 + MPMX20_03141 0.11 +0.7 3,301,590 + MPMX20_03141 0.11 +1.8 3,301,592 + MPMX20_03141 0.11 +1.1 3,301,593 - MPMX20_03141 0.12 +0.5 3,301,595 - MPMX20_03141 0.12 +0.0 3,301,598 - MPMX20_03141 0.12 -1.3 3,301,598 - MPMX20_03141 0.12 -2.0 3,301,598 - MPMX20_03141 0.12 -0.7 3,301,600 - MPMX20_03141 0.13 -2.1 3,301,600 - MPMX20_03141 0.13 +0.0 3,301,600 - MPMX20_03141 0.13 -0.9 3,301,602 + MPMX20_03141 0.13 -2.1 3,301,602 + MPMX20_03141 0.13 +1.2 3,301,610 - MPMX20_03141 0.15 -2.1 3,301,619 - MPMX20_03141 0.16 -0.7 3,301,619 - MPMX20_03141 0.16 -1.8 3,301,628 + MPMX20_03141 0.18 +0.0 3,301,636 - MPMX20_03141 0.19 -0.9 3,301,636 - MPMX20_03141 0.19 -0.4 3,301,669 - MPMX20_03141 0.25 -1.6 3,301,677 + MPMX20_03141 0.26 -0.3 3,301,677 + MPMX20_03141 0.26 +0.9 3,301,677 + MPMX20_03141 0.26 -2.7 3,301,685 - MPMX20_03141 0.28 -1.0 3,301,685 - MPMX20_03141 0.28 -1.4 3,301,692 - MPMX20_03141 0.29 +0.3 3,301,692 - MPMX20_03141 0.29 +0.3 3,301,745 + MPMX20_03141 0.38 +0.5 3,301,746 - MPMX20_03141 0.38 +0.3 3,301,755 - MPMX20_03141 0.40 +1.3 3,301,757 + MPMX20_03141 0.40 -1.2 3,301,764 + MPMX20_03141 0.42 -0.5 3,301,765 - MPMX20_03141 0.42 -0.6 3,301,772 - MPMX20_03141 0.43 +1.3 3,301,779 - MPMX20_03141 0.44 -0.7 3,301,824 - MPMX20_03141 0.52 +0.3 3,301,844 + MPMX20_03141 0.56 -2.1 3,301,849 + MPMX20_03141 0.56 -0.9 3,301,852 - MPMX20_03141 0.57 -0.2 3,301,878 + MPMX20_03141 0.62 +1.8 3,301,911 + MPMX20_03141 0.67 -0.5 3,301,914 - MPMX20_03141 0.68 -0.4 3,301,932 + MPMX20_03141 0.71 -0.2 3,301,932 + MPMX20_03141 0.71 -1.6 3,301,932 + MPMX20_03141 0.71 -1.3 3,301,932 + MPMX20_03141 0.71 -0.1 3,301,935 - MPMX20_03141 0.72 -0.2 3,301,940 - MPMX20_03141 0.72 +0.6 3,301,940 - MPMX20_03141 0.72 -0.5 3,301,965 - MPMX20_03141 0.77 -1.8 3,301,995 + MPMX20_03141 0.82 +0.6 3,301,999 - MPMX20_03141 0.83 +1.3 3,302,036 + MPMX20_03141 0.89 +2.0 3,302,060 + -0.4 3,302,079 + -0.0 3,302,219 + +1.3 3,302,221 - -1.1 3,302,224 + +0.3 3,302,226 - -2.6 3,302,227 - -1.2 3,302,281 + +1.3 3,302,286 + +2.5 3,302,289 - +2.3 3,302,298 + -1.4 3,302,359 - +0.3 3,302,448 - MPMX20_03142 0.15 +1.5 3,302,462 + MPMX20_03142 0.15 -2.1 3,302,465 - MPMX20_03142 0.16 +0.1 3,302,465 - MPMX20_03142 0.16 +0.3 3,302,470 - MPMX20_03142 0.16 -0.8 3,302,485 + MPMX20_03142 0.17 -2.0 3,302,492 + MPMX20_03142 0.17 +1.3 3,302,492 + MPMX20_03142 0.17 +1.8 3,302,493 - MPMX20_03142 0.17 +0.6 3,302,493 - MPMX20_03142 0.17 +0.4 3,302,500 - MPMX20_03142 0.18 -0.4 3,302,500 - MPMX20_03142 0.18 -1.6 3,302,540 + MPMX20_03142 0.20 -2.8 3,302,608 - MPMX20_03142 0.25 +1.2 3,302,742 + MPMX20_03142 0.34 +0.3 3,302,781 - MPMX20_03142 0.36 -0.5 3,302,826 + MPMX20_03142 0.39 +0.9 3,302,834 - MPMX20_03142 0.40 -0.6 3,302,870 + MPMX20_03142 0.42 +0.0 3,302,963 - MPMX20_03142 0.48 +0.1 3,302,963 - MPMX20_03142 0.48 +0.7 3,302,979 + MPMX20_03142 0.49 +0.5 3,303,006 + MPMX20_03142 0.51 -2.6 3,303,120 - MPMX20_03142 0.58 -1.3 3,303,147 + MPMX20_03142 0.60 +0.7 3,303,215 + MPMX20_03142 0.64 +2.8 3,303,246 + MPMX20_03142 0.66 -0.7 3,303,261 + MPMX20_03142 0.67 +0.3 3,303,348 - MPMX20_03142 0.73 -0.8 3,303,498 + MPMX20_03142 0.83 -0.3 3,303,498 + MPMX20_03142 0.83 -0.6 3,303,498 + MPMX20_03142 0.83 +3.6 3,303,498 + MPMX20_03142 0.83 +0.5 3,303,506 - MPMX20_03142 0.83 -1.9 3,303,506 - MPMX20_03142 0.83 -2.5 3,303,506 - MPMX20_03142 0.83 -1.1 3,303,506 - MPMX20_03142 0.83 +0.3 3,303,506 - MPMX20_03142 0.83 -0.4 3,303,506 - MPMX20_03142 0.83 +0.8 3,303,506 - MPMX20_03142 0.83 -1.1 3,303,652 - -1.0 3,303,657 + +1.3 3,303,803 + +6.9 3,303,811 - -2.3 3,303,821 + -1.5 3,303,821 + -0.3 3,303,829 - -0.4 3,303,829 - +0.6 3,303,872 + -1.8 3,303,881 - -0.9 3,303,887 + +1.0 3,303,895 - -0.7 3,303,895 - +0.9 3,303,977 + +0.3 3,303,985 - +3.3 3,303,985 - -1.6 3,304,053 + MPMX20_03143 0.12 +1.8 3,304,101 - MPMX20_03143 0.14 -0.8 3,304,124 + MPMX20_03143 0.16 -1.6 3,304,222 + MPMX20_03143 0.21 -1.1 3,304,259 - MPMX20_03143 0.23 -1.5 3,304,310 - MPMX20_03143 0.26 +0.3 3,304,348 + MPMX20_03143 0.28 +0.7 3,304,356 - MPMX20_03143 0.28 +0.7 3,304,356 - MPMX20_03143 0.28 -1.2 3,304,356 - MPMX20_03143 0.28 +0.4 3,304,356 - MPMX20_03143 0.28 -0.7 3,304,356 - MPMX20_03143 0.28 -0.9 3,304,451 + MPMX20_03143 0.34 -2.2 3,304,511 - MPMX20_03143 0.37 -1.2 3,304,519 + MPMX20_03143 0.37 +0.1 3,304,568 - MPMX20_03143 0.40 -0.6 3,304,597 + MPMX20_03143 0.42 +0.6 3,304,671 + MPMX20_03143 0.46 -0.4 3,304,689 + MPMX20_03143 0.47 -1.7 3,304,697 - MPMX20_03143 0.47 -0.1 3,304,717 + MPMX20_03143 0.48 -1.0 3,304,723 - MPMX20_03143 0.49 -0.7 3,304,725 - MPMX20_03143 0.49 -0.7 3,304,725 - MPMX20_03143 0.49 -0.7 3,304,765 - MPMX20_03143 0.51 -1.2
Or see this region's nucleotide sequence