Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02146 and MPMX20_02147 overlap by 4 nucleotides MPMX20_02147 and MPMX20_02148 are separated by 2 nucleotides MPMX20_02148 and MPMX20_02149 are separated by 1 nucleotides
MPMX20_02146: MPMX20_02146 - 1,2-phenylacetyl-CoA epoxidase, subunit E, at 2,238,386 to 2,239,456
_02146
MPMX20_02147: MPMX20_02147 - 2,3-dehydroadipyl-CoA hydratase, at 2,239,453 to 2,240,220
_02147
MPMX20_02148: MPMX20_02148 - 1,2-epoxyphenylacetyl-CoA isomerase, at 2,240,223 to 2,241,008
_02148
MPMX20_02149: MPMX20_02149 - 3-hydroxyadipyl-CoA dehydrogenase, at 2,241,010 to 2,242,437
_02149
Position (kb)
2239
2240
2241 Strain fitness (log2 ratio)
-2
-1
0
1 at 2238.463 kb on + strand at 2238.463 kb on + strand at 2238.471 kb on - strand at 2238.506 kb on + strand, within MPMX20_02146 at 2238.570 kb on + strand, within MPMX20_02146 at 2238.589 kb on - strand, within MPMX20_02146 at 2238.594 kb on - strand, within MPMX20_02146 at 2238.669 kb on + strand, within MPMX20_02146 at 2238.753 kb on + strand, within MPMX20_02146 at 2238.759 kb on + strand, within MPMX20_02146 at 2238.792 kb on + strand, within MPMX20_02146 at 2238.820 kb on + strand, within MPMX20_02146 at 2238.820 kb on + strand, within MPMX20_02146 at 2238.828 kb on - strand, within MPMX20_02146 at 2238.844 kb on + strand, within MPMX20_02146 at 2238.921 kb on + strand, within MPMX20_02146 at 2238.921 kb on + strand, within MPMX20_02146 at 2238.929 kb on + strand, within MPMX20_02146 at 2238.929 kb on - strand, within MPMX20_02146 at 2239.024 kb on - strand, within MPMX20_02146 at 2239.030 kb on - strand, within MPMX20_02146 at 2239.076 kb on + strand, within MPMX20_02146 at 2239.130 kb on - strand, within MPMX20_02146 at 2239.278 kb on - strand, within MPMX20_02146 at 2239.278 kb on - strand, within MPMX20_02146 at 2239.298 kb on - strand, within MPMX20_02146 at 2239.353 kb on + strand at 2239.353 kb on + strand at 2239.361 kb on - strand at 2239.361 kb on - strand at 2239.380 kb on + strand at 2239.400 kb on - strand at 2239.413 kb on + strand at 2239.473 kb on - strand at 2239.536 kb on + strand, within MPMX20_02147 at 2239.611 kb on + strand, within MPMX20_02147 at 2239.633 kb on - strand, within MPMX20_02147 at 2239.650 kb on - strand, within MPMX20_02147 at 2239.788 kb on + strand, within MPMX20_02147 at 2239.788 kb on + strand, within MPMX20_02147 at 2239.935 kb on + strand, within MPMX20_02147 at 2239.937 kb on + strand, within MPMX20_02147 at 2239.969 kb on - strand, within MPMX20_02147 at 2239.979 kb on - strand, within MPMX20_02147 at 2239.983 kb on + strand, within MPMX20_02147 at 2240.037 kb on - strand, within MPMX20_02147 at 2240.048 kb on - strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.116 kb on + strand, within MPMX20_02147 at 2240.124 kb on - strand, within MPMX20_02147 at 2240.130 kb on + strand, within MPMX20_02147 at 2240.142 kb on + strand, within MPMX20_02147 at 2240.160 kb on - strand at 2240.271 kb on - strand at 2240.276 kb on - strand at 2240.359 kb on - strand, within MPMX20_02148 at 2240.563 kb on - strand, within MPMX20_02148 at 2240.568 kb on - strand, within MPMX20_02148 at 2240.596 kb on - strand, within MPMX20_02148 at 2240.622 kb on + strand, within MPMX20_02148 at 2240.664 kb on - strand, within MPMX20_02148 at 2240.706 kb on - strand, within MPMX20_02148 at 2240.711 kb on - strand, within MPMX20_02148 at 2240.741 kb on + strand, within MPMX20_02148 at 2240.761 kb on + strand, within MPMX20_02148 at 2240.768 kb on + strand, within MPMX20_02148 at 2240.812 kb on - strand, within MPMX20_02148 at 2240.836 kb on + strand, within MPMX20_02148 at 2240.839 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.844 kb on - strand, within MPMX20_02148 at 2240.887 kb on - strand, within MPMX20_02148 at 2240.960 kb on + strand at 2240.976 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 2,238,463 + -2.1 2,238,463 + -2.1 2,238,471 - -0.5 2,238,506 + MPMX20_02146 0.11 -0.5 2,238,570 + MPMX20_02146 0.17 -0.9 2,238,589 - MPMX20_02146 0.19 -2.3 2,238,594 - MPMX20_02146 0.19 -2.4 2,238,669 + MPMX20_02146 0.26 +0.1 2,238,753 + MPMX20_02146 0.34 -1.5 2,238,759 + MPMX20_02146 0.35 -1.3 2,238,792 + MPMX20_02146 0.38 -1.0 2,238,820 + MPMX20_02146 0.41 -0.1 2,238,820 + MPMX20_02146 0.41 -0.8 2,238,828 - MPMX20_02146 0.41 +1.5 2,238,844 + MPMX20_02146 0.43 -0.2 2,238,921 + MPMX20_02146 0.50 -1.6 2,238,921 + MPMX20_02146 0.50 -0.8 2,238,929 + MPMX20_02146 0.51 +0.3 2,238,929 - MPMX20_02146 0.51 -1.2 2,239,024 - MPMX20_02146 0.60 -1.2 2,239,030 - MPMX20_02146 0.60 -1.5 2,239,076 + MPMX20_02146 0.64 -1.6 2,239,130 - MPMX20_02146 0.69 +1.7 2,239,278 - MPMX20_02146 0.83 +0.2 2,239,278 - MPMX20_02146 0.83 -0.3 2,239,298 - MPMX20_02146 0.85 +0.2 2,239,353 + -1.2 2,239,353 + +0.4 2,239,361 - -1.7 2,239,361 - +0.4 2,239,380 + -1.7 2,239,400 - -1.7 2,239,413 + +1.7 2,239,473 - -1.0 2,239,536 + MPMX20_02147 0.11 -1.0 2,239,611 + MPMX20_02147 0.21 -0.1 2,239,633 - MPMX20_02147 0.23 -1.1 2,239,650 - MPMX20_02147 0.26 -0.5 2,239,788 + MPMX20_02147 0.44 +0.7 2,239,788 + MPMX20_02147 0.44 -1.9 2,239,935 + MPMX20_02147 0.63 +0.1 2,239,937 + MPMX20_02147 0.63 -1.5 2,239,969 - MPMX20_02147 0.67 -2.0 2,239,979 - MPMX20_02147 0.68 -1.5 2,239,983 + MPMX20_02147 0.69 -1.4 2,240,037 - MPMX20_02147 0.76 -1.2 2,240,048 - MPMX20_02147 0.77 -2.2 2,240,116 + MPMX20_02147 0.86 -1.7 2,240,116 + MPMX20_02147 0.86 -2.7 2,240,116 + MPMX20_02147 0.86 -1.8 2,240,124 - MPMX20_02147 0.87 -0.8 2,240,130 + MPMX20_02147 0.88 -2.0 2,240,142 + MPMX20_02147 0.90 -2.4 2,240,160 - +0.1 2,240,271 - +1.3 2,240,276 - -1.6 2,240,359 - MPMX20_02148 0.17 -0.3 2,240,563 - MPMX20_02148 0.43 -0.1 2,240,568 - MPMX20_02148 0.44 -1.1 2,240,596 - MPMX20_02148 0.47 -0.3 2,240,622 + MPMX20_02148 0.51 -0.1 2,240,664 - MPMX20_02148 0.56 +0.0 2,240,706 - MPMX20_02148 0.61 -1.0 2,240,711 - MPMX20_02148 0.62 -0.4 2,240,741 + MPMX20_02148 0.66 -0.2 2,240,761 + MPMX20_02148 0.68 -1.0 2,240,768 + MPMX20_02148 0.69 -0.2 2,240,812 - MPMX20_02148 0.75 +1.1 2,240,836 + MPMX20_02148 0.78 -1.6 2,240,839 - MPMX20_02148 0.78 +0.6 2,240,844 - MPMX20_02148 0.79 +0.1 2,240,844 - MPMX20_02148 0.79 -1.6 2,240,844 - MPMX20_02148 0.79 -1.2 2,240,887 - MPMX20_02148 0.84 +0.5 2,240,960 + -1.9 2,240,976 + -0.9
Or see this region's nucleotide sequence