Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02020 and MPMX20_02021 are separated by 197 nucleotides MPMX20_02021 and MPMX20_02022 are separated by 137 nucleotides
MPMX20_02020: MPMX20_02020 - Mannose-6-phosphate isomerase, at 2,110,821 to 2,111,996
_02020
MPMX20_02021: MPMX20_02021 - Fumarate hydratase class I, aerobic, at 2,112,194 to 2,113,840
_02021
MPMX20_02022: MPMX20_02022 - Fumarate hydratase class II, at 2,113,978 to 2,115,372
_02022
Position (kb)
2112
2113
2114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2111.210 kb on + strand, within MPMX20_02020 at 2111.256 kb on - strand, within MPMX20_02020 at 2111.269 kb on + strand, within MPMX20_02020 at 2111.278 kb on - strand, within MPMX20_02020 at 2111.289 kb on + strand, within MPMX20_02020 at 2111.299 kb on + strand, within MPMX20_02020 at 2111.299 kb on + strand, within MPMX20_02020 at 2111.307 kb on - strand, within MPMX20_02020 at 2111.307 kb on - strand, within MPMX20_02020 at 2111.386 kb on + strand, within MPMX20_02020 at 2111.451 kb on - strand, within MPMX20_02020 at 2111.461 kb on - strand, within MPMX20_02020 at 2111.580 kb on - strand, within MPMX20_02020 at 2111.597 kb on - strand, within MPMX20_02020 at 2111.609 kb on - strand, within MPMX20_02020 at 2111.663 kb on + strand, within MPMX20_02020 at 2111.681 kb on - strand, within MPMX20_02020 at 2111.681 kb on - strand, within MPMX20_02020 at 2111.703 kb on + strand, within MPMX20_02020 at 2111.711 kb on - strand, within MPMX20_02020 at 2111.728 kb on + strand, within MPMX20_02020 at 2111.737 kb on + strand, within MPMX20_02020 at 2111.738 kb on - strand, within MPMX20_02020 at 2111.745 kb on - strand, within MPMX20_02020 at 2111.835 kb on - strand, within MPMX20_02020 at 2111.835 kb on - strand, within MPMX20_02020 at 2111.874 kb on - strand, within MPMX20_02020 at 2111.906 kb on + strand at 2111.916 kb on + strand at 2111.926 kb on + strand at 2111.955 kb on + strand at 2111.967 kb on + strand at 2111.969 kb on - strand at 2111.975 kb on - strand at 2111.975 kb on - strand at 2111.977 kb on + strand at 2111.977 kb on + strand at 2111.979 kb on + strand at 2111.979 kb on + strand at 2111.998 kb on + strand at 2111.998 kb on + strand at 2112.056 kb on + strand at 2112.056 kb on + strand at 2112.056 kb on + strand at 2112.064 kb on - strand at 2112.116 kb on + strand at 2112.123 kb on - strand at 2112.131 kb on + strand at 2112.154 kb on - strand at 2112.169 kb on + strand at 2112.197 kb on - strand at 2112.243 kb on - strand at 2112.318 kb on - strand at 2112.323 kb on - strand at 2112.337 kb on - strand at 2112.377 kb on - strand, within MPMX20_02021 at 2112.418 kb on - strand, within MPMX20_02021 at 2112.460 kb on - strand, within MPMX20_02021 at 2112.553 kb on + strand, within MPMX20_02021 at 2112.594 kb on - strand, within MPMX20_02021 at 2112.664 kb on + strand, within MPMX20_02021 at 2112.682 kb on - strand, within MPMX20_02021 at 2112.706 kb on - strand, within MPMX20_02021 at 2112.706 kb on - strand, within MPMX20_02021 at 2112.706 kb on - strand, within MPMX20_02021 at 2112.799 kb on + strand, within MPMX20_02021 at 2112.828 kb on - strand, within MPMX20_02021 at 2112.900 kb on + strand, within MPMX20_02021 at 2113.139 kb on - strand, within MPMX20_02021 at 2113.149 kb on - strand, within MPMX20_02021 at 2113.220 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.277 kb on + strand, within MPMX20_02021 at 2113.285 kb on - strand, within MPMX20_02021 at 2113.510 kb on - strand, within MPMX20_02021 at 2113.543 kb on + strand, within MPMX20_02021 at 2113.570 kb on - strand, within MPMX20_02021 at 2113.629 kb on + strand, within MPMX20_02021 at 2113.637 kb on - strand, within MPMX20_02021 at 2113.683 kb on - strand at 2113.697 kb on - strand at 2113.760 kb on + strand at 2113.804 kb on + strand at 2113.931 kb on - strand at 2113.966 kb on - strand at 2113.966 kb on - strand at 2113.990 kb on - strand at 2114.012 kb on - strand at 2114.037 kb on + strand at 2114.037 kb on + strand at 2114.037 kb on + strand at 2114.037 kb on + strand at 2114.037 kb on + strand at 2114.045 kb on - strand at 2114.045 kb on - strand at 2114.045 kb on - strand at 2114.127 kb on + strand, within MPMX20_02022 at 2114.135 kb on - strand, within MPMX20_02022 at 2114.215 kb on + strand, within MPMX20_02022 at 2114.328 kb on + strand, within MPMX20_02022 at 2114.328 kb on + strand, within MPMX20_02022 at 2114.365 kb on - strand, within MPMX20_02022 at 2114.474 kb on - strand, within MPMX20_02022 at 2114.486 kb on + strand, within MPMX20_02022 at 2114.528 kb on - strand, within MPMX20_02022 at 2114.534 kb on + strand, within MPMX20_02022 at 2114.680 kb on + strand, within MPMX20_02022 at 2114.680 kb on + strand, within MPMX20_02022 at 2114.797 kb on - strand, within MPMX20_02022 at 2114.815 kb on + strand, within MPMX20_02022 at 2114.825 kb on - strand, within MPMX20_02022 at 2114.825 kb on - strand, within MPMX20_02022
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 2,111,210 + MPMX20_02020 0.33 -1.9 2,111,256 - MPMX20_02020 0.37 -1.5 2,111,269 + MPMX20_02020 0.38 -1.0 2,111,278 - MPMX20_02020 0.39 -1.8 2,111,289 + MPMX20_02020 0.40 -1.5 2,111,299 + MPMX20_02020 0.41 -3.0 2,111,299 + MPMX20_02020 0.41 -3.3 2,111,307 - MPMX20_02020 0.41 -1.5 2,111,307 - MPMX20_02020 0.41 -0.8 2,111,386 + MPMX20_02020 0.48 -1.5 2,111,451 - MPMX20_02020 0.54 -1.4 2,111,461 - MPMX20_02020 0.54 -4.0 2,111,580 - MPMX20_02020 0.65 -1.7 2,111,597 - MPMX20_02020 0.66 -2.0 2,111,609 - MPMX20_02020 0.67 -2.3 2,111,663 + MPMX20_02020 0.72 -2.4 2,111,681 - MPMX20_02020 0.73 -1.6 2,111,681 - MPMX20_02020 0.73 -2.1 2,111,703 + MPMX20_02020 0.75 -0.8 2,111,711 - MPMX20_02020 0.76 -3.0 2,111,728 + MPMX20_02020 0.77 -1.4 2,111,737 + MPMX20_02020 0.78 +0.8 2,111,738 - MPMX20_02020 0.78 -1.8 2,111,745 - MPMX20_02020 0.79 -3.7 2,111,835 - MPMX20_02020 0.86 +0.1 2,111,835 - MPMX20_02020 0.86 -1.8 2,111,874 - MPMX20_02020 0.90 -0.9 2,111,906 + +1.1 2,111,916 + -2.7 2,111,926 + +3.5 2,111,955 + -2.0 2,111,967 + -1.1 2,111,969 - -2.0 2,111,975 - -2.8 2,111,975 - +0.4 2,111,977 + -0.1 2,111,977 + +0.3 2,111,979 + -1.3 2,111,979 + +0.7 2,111,998 + -1.0 2,111,998 + -0.3 2,112,056 + +0.9 2,112,056 + +0.7 2,112,056 + -0.4 2,112,064 - -1.1 2,112,116 + +0.4 2,112,123 - -0.5 2,112,131 + +1.5 2,112,154 - -1.2 2,112,169 + -2.3 2,112,197 - -1.3 2,112,243 - +0.4 2,112,318 - +0.5 2,112,323 - +0.0 2,112,337 - -0.9 2,112,377 - MPMX20_02021 0.11 -0.4 2,112,418 - MPMX20_02021 0.14 +0.7 2,112,460 - MPMX20_02021 0.16 -3.1 2,112,553 + MPMX20_02021 0.22 -2.0 2,112,594 - MPMX20_02021 0.24 -0.3 2,112,664 + MPMX20_02021 0.29 -1.9 2,112,682 - MPMX20_02021 0.30 +0.7 2,112,706 - MPMX20_02021 0.31 -2.1 2,112,706 - MPMX20_02021 0.31 -2.5 2,112,706 - MPMX20_02021 0.31 +0.1 2,112,799 + MPMX20_02021 0.37 -1.9 2,112,828 - MPMX20_02021 0.38 +0.5 2,112,900 + MPMX20_02021 0.43 -0.5 2,113,139 - MPMX20_02021 0.57 -0.3 2,113,149 - MPMX20_02021 0.58 -1.2 2,113,220 + MPMX20_02021 0.62 -2.3 2,113,277 + MPMX20_02021 0.66 -2.2 2,113,277 + MPMX20_02021 0.66 -0.5 2,113,277 + MPMX20_02021 0.66 -0.7 2,113,277 + MPMX20_02021 0.66 -1.6 2,113,277 + MPMX20_02021 0.66 -1.9 2,113,277 + MPMX20_02021 0.66 -1.9 2,113,285 - MPMX20_02021 0.66 -2.2 2,113,510 - MPMX20_02021 0.80 +0.5 2,113,543 + MPMX20_02021 0.82 -2.8 2,113,570 - MPMX20_02021 0.84 -0.5 2,113,629 + MPMX20_02021 0.87 -1.8 2,113,637 - MPMX20_02021 0.88 +1.1 2,113,683 - -1.7 2,113,697 - +0.7 2,113,760 + -0.2 2,113,804 + -1.5 2,113,931 - +1.1 2,113,966 - -2.1 2,113,966 - +2.0 2,113,990 - -1.3 2,114,012 - -0.7 2,114,037 + -2.0 2,114,037 + +0.9 2,114,037 + -0.6 2,114,037 + -0.3 2,114,037 + +2.0 2,114,045 - -0.7 2,114,045 - -0.8 2,114,045 - +0.3 2,114,127 + MPMX20_02022 0.11 -0.8 2,114,135 - MPMX20_02022 0.11 -0.6 2,114,215 + MPMX20_02022 0.17 -1.2 2,114,328 + MPMX20_02022 0.25 +0.2 2,114,328 + MPMX20_02022 0.25 +0.9 2,114,365 - MPMX20_02022 0.28 -1.7 2,114,474 - MPMX20_02022 0.36 -1.0 2,114,486 + MPMX20_02022 0.36 -0.3 2,114,528 - MPMX20_02022 0.39 -0.3 2,114,534 + MPMX20_02022 0.40 +0.4 2,114,680 + MPMX20_02022 0.50 -1.6 2,114,680 + MPMX20_02022 0.50 -1.5 2,114,797 - MPMX20_02022 0.59 +0.2 2,114,815 + MPMX20_02022 0.60 +1.7 2,114,825 - MPMX20_02022 0.61 +0.5 2,114,825 - MPMX20_02022 0.61 -0.1
Or see this region's nucleotide sequence