Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02017 and MPMX20_02018 are separated by 177 nucleotides MPMX20_02018 and MPMX20_02019 are separated by 69 nucleotides
MPMX20_02017: MPMX20_02017 - PTS system maltose-specific EIICB component, at 2,106,297 to 2,107,889
_02017
MPMX20_02018: MPMX20_02018 - Maltose regulon regulatory protein MalI, at 2,108,067 to 2,109,092
_02018
MPMX20_02019: MPMX20_02019 - Protein YdgA, at 2,109,162 to 2,110,721
_02019
Position (kb)
2108
2109
2110 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2107.098 kb on + strand, within MPMX20_02017 at 2107.126 kb on - strand, within MPMX20_02017 at 2107.237 kb on + strand, within MPMX20_02017 at 2107.250 kb on + strand, within MPMX20_02017 at 2107.267 kb on - strand, within MPMX20_02017 at 2107.282 kb on + strand, within MPMX20_02017 at 2107.282 kb on + strand, within MPMX20_02017 at 2107.290 kb on - strand, within MPMX20_02017 at 2107.290 kb on - strand, within MPMX20_02017 at 2107.308 kb on + strand, within MPMX20_02017 at 2107.308 kb on + strand, within MPMX20_02017 at 2107.328 kb on + strand, within MPMX20_02017 at 2107.328 kb on + strand, within MPMX20_02017 at 2107.330 kb on - strand, within MPMX20_02017 at 2107.354 kb on + strand, within MPMX20_02017 at 2107.362 kb on - strand, within MPMX20_02017 at 2107.521 kb on + strand, within MPMX20_02017 at 2107.642 kb on + strand, within MPMX20_02017 at 2107.723 kb on + strand, within MPMX20_02017 at 2107.759 kb on - strand at 2107.759 kb on - strand at 2107.816 kb on - strand at 2107.820 kb on + strand at 2107.820 kb on + strand at 2107.828 kb on - strand at 2107.828 kb on - strand at 2107.884 kb on - strand at 2107.923 kb on - strand at 2107.934 kb on - strand at 2108.063 kb on + strand at 2108.136 kb on - strand at 2108.162 kb on + strand at 2108.241 kb on - strand, within MPMX20_02018 at 2108.250 kb on + strand, within MPMX20_02018 at 2108.286 kb on - strand, within MPMX20_02018 at 2108.434 kb on + strand, within MPMX20_02018 at 2108.465 kb on - strand, within MPMX20_02018 at 2108.506 kb on + strand, within MPMX20_02018 at 2108.561 kb on + strand, within MPMX20_02018 at 2108.569 kb on - strand, within MPMX20_02018 at 2108.607 kb on + strand, within MPMX20_02018 at 2108.671 kb on - strand, within MPMX20_02018 at 2108.675 kb on - strand, within MPMX20_02018 at 2108.687 kb on + strand, within MPMX20_02018 at 2108.752 kb on - strand, within MPMX20_02018 at 2108.844 kb on + strand, within MPMX20_02018 at 2108.852 kb on - strand, within MPMX20_02018 at 2108.852 kb on - strand, within MPMX20_02018 at 2108.929 kb on + strand, within MPMX20_02018 at 2108.980 kb on - strand, within MPMX20_02018 at 2109.003 kb on - strand at 2109.320 kb on - strand, within MPMX20_02019 at 2109.338 kb on - strand, within MPMX20_02019 at 2109.339 kb on + strand, within MPMX20_02019 at 2109.386 kb on - strand, within MPMX20_02019 at 2109.415 kb on + strand, within MPMX20_02019 at 2109.448 kb on + strand, within MPMX20_02019 at 2109.456 kb on - strand, within MPMX20_02019 at 2109.504 kb on - strand, within MPMX20_02019 at 2109.529 kb on - strand, within MPMX20_02019 at 2109.552 kb on + strand, within MPMX20_02019 at 2109.552 kb on + strand, within MPMX20_02019 at 2109.560 kb on - strand, within MPMX20_02019 at 2109.560 kb on - strand, within MPMX20_02019 at 2109.560 kb on - strand, within MPMX20_02019 at 2109.561 kb on - strand, within MPMX20_02019 at 2109.566 kb on - strand, within MPMX20_02019 at 2109.602 kb on + strand, within MPMX20_02019 at 2109.610 kb on - strand, within MPMX20_02019 at 2109.644 kb on + strand, within MPMX20_02019 at 2109.652 kb on + strand, within MPMX20_02019 at 2109.655 kb on - strand, within MPMX20_02019 at 2109.675 kb on - strand, within MPMX20_02019 at 2109.675 kb on - strand, within MPMX20_02019 at 2109.703 kb on + strand, within MPMX20_02019 at 2109.732 kb on + strand, within MPMX20_02019 at 2109.753 kb on + strand, within MPMX20_02019 at 2109.753 kb on + strand, within MPMX20_02019 at 2109.753 kb on + strand, within MPMX20_02019 at 2109.761 kb on - strand, within MPMX20_02019 at 2109.761 kb on - strand, within MPMX20_02019 at 2109.869 kb on - strand, within MPMX20_02019 at 2109.879 kb on + strand, within MPMX20_02019 at 2109.894 kb on - strand, within MPMX20_02019 at 2109.942 kb on - strand, within MPMX20_02019 at 2109.947 kb on + strand, within MPMX20_02019 at 2109.947 kb on + strand, within MPMX20_02019 at 2109.954 kb on - strand, within MPMX20_02019 at 2109.967 kb on + strand, within MPMX20_02019
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 2,107,098 + MPMX20_02017 0.50 +0.3 2,107,126 - MPMX20_02017 0.52 +0.1 2,107,237 + MPMX20_02017 0.59 -2.4 2,107,250 + MPMX20_02017 0.60 +0.4 2,107,267 - MPMX20_02017 0.61 +2.7 2,107,282 + MPMX20_02017 0.62 -2.2 2,107,282 + MPMX20_02017 0.62 -0.2 2,107,290 - MPMX20_02017 0.62 +0.3 2,107,290 - MPMX20_02017 0.62 -0.2 2,107,308 + MPMX20_02017 0.63 +1.4 2,107,308 + MPMX20_02017 0.63 -0.5 2,107,328 + MPMX20_02017 0.65 -0.8 2,107,328 + MPMX20_02017 0.65 -2.0 2,107,330 - MPMX20_02017 0.65 -1.4 2,107,354 + MPMX20_02017 0.66 -0.6 2,107,362 - MPMX20_02017 0.67 -1.7 2,107,521 + MPMX20_02017 0.77 +0.8 2,107,642 + MPMX20_02017 0.84 +0.8 2,107,723 + MPMX20_02017 0.90 -0.5 2,107,759 - -0.2 2,107,759 - +0.5 2,107,816 - +2.3 2,107,820 + -0.1 2,107,820 + -1.8 2,107,828 - -1.1 2,107,828 - +0.0 2,107,884 - -0.9 2,107,923 - -1.1 2,107,934 - -2.1 2,108,063 + +0.1 2,108,136 - -0.2 2,108,162 + -2.1 2,108,241 - MPMX20_02018 0.17 -2.0 2,108,250 + MPMX20_02018 0.18 -0.8 2,108,286 - MPMX20_02018 0.21 +1.1 2,108,434 + MPMX20_02018 0.36 -1.1 2,108,465 - MPMX20_02018 0.39 -0.7 2,108,506 + MPMX20_02018 0.43 -0.0 2,108,561 + MPMX20_02018 0.48 -0.6 2,108,569 - MPMX20_02018 0.49 -1.8 2,108,607 + MPMX20_02018 0.53 -1.6 2,108,671 - MPMX20_02018 0.59 +0.9 2,108,675 - MPMX20_02018 0.59 -0.8 2,108,687 + MPMX20_02018 0.60 -0.4 2,108,752 - MPMX20_02018 0.67 -3.0 2,108,844 + MPMX20_02018 0.76 -1.8 2,108,852 - MPMX20_02018 0.77 -1.3 2,108,852 - MPMX20_02018 0.77 -1.6 2,108,929 + MPMX20_02018 0.84 -1.5 2,108,980 - MPMX20_02018 0.89 -0.8 2,109,003 - +0.7 2,109,320 - MPMX20_02019 0.10 +0.9 2,109,338 - MPMX20_02019 0.11 +0.1 2,109,339 + MPMX20_02019 0.11 -0.4 2,109,386 - MPMX20_02019 0.14 +1.7 2,109,415 + MPMX20_02019 0.16 -0.7 2,109,448 + MPMX20_02019 0.18 -0.3 2,109,456 - MPMX20_02019 0.19 -0.8 2,109,504 - MPMX20_02019 0.22 -0.6 2,109,529 - MPMX20_02019 0.24 -1.6 2,109,552 + MPMX20_02019 0.25 -3.3 2,109,552 + MPMX20_02019 0.25 -0.3 2,109,560 - MPMX20_02019 0.26 -1.9 2,109,560 - MPMX20_02019 0.26 -0.2 2,109,560 - MPMX20_02019 0.26 +3.9 2,109,561 - MPMX20_02019 0.26 -0.0 2,109,566 - MPMX20_02019 0.26 +1.7 2,109,602 + MPMX20_02019 0.28 -0.4 2,109,610 - MPMX20_02019 0.29 -1.8 2,109,644 + MPMX20_02019 0.31 -0.1 2,109,652 + MPMX20_02019 0.31 +1.3 2,109,655 - MPMX20_02019 0.32 -0.3 2,109,675 - MPMX20_02019 0.33 -1.5 2,109,675 - MPMX20_02019 0.33 -2.7 2,109,703 + MPMX20_02019 0.35 +4.7 2,109,732 + MPMX20_02019 0.37 -0.0 2,109,753 + MPMX20_02019 0.38 +1.0 2,109,753 + MPMX20_02019 0.38 -0.3 2,109,753 + MPMX20_02019 0.38 +0.5 2,109,761 - MPMX20_02019 0.38 +0.2 2,109,761 - MPMX20_02019 0.38 -1.2 2,109,869 - MPMX20_02019 0.45 +0.5 2,109,879 + MPMX20_02019 0.46 +0.7 2,109,894 - MPMX20_02019 0.47 +0.1 2,109,942 - MPMX20_02019 0.50 -1.8 2,109,947 + MPMX20_02019 0.50 +0.9 2,109,947 + MPMX20_02019 0.50 -1.8 2,109,954 - MPMX20_02019 0.51 -2.1 2,109,967 + MPMX20_02019 0.52 +0.1
Or see this region's nucleotide sequence