Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01868

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01867 and MPMX20_01868 overlap by 14 nucleotidesMPMX20_01868 and MPMX20_01869 are separated by 10 nucleotides MPMX20_01867: MPMX20_01867 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 1,961,169 to 1,962,656 _01867 MPMX20_01868: MPMX20_01868 - N-succinylarginine dihydrolase, at 1,962,643 to 1,963,968 _01868 MPMX20_01869: MPMX20_01869 - Succinylglutamate desuccinylase, at 1,963,979 to 1,964,944 _01869 Position (kb) 1962 1963 1964Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1961.653 kb on - strand, within MPMX20_01867at 1961.752 kb on + strand, within MPMX20_01867at 1961.894 kb on + strand, within MPMX20_01867at 1961.969 kb on - strand, within MPMX20_01867at 1961.993 kb on + strand, within MPMX20_01867at 1962.028 kb on + strand, within MPMX20_01867at 1962.036 kb on - strand, within MPMX20_01867at 1962.041 kb on - strand, within MPMX20_01867at 1962.063 kb on + strand, within MPMX20_01867at 1962.079 kb on + strand, within MPMX20_01867at 1962.086 kb on - strand, within MPMX20_01867at 1962.088 kb on - strand, within MPMX20_01867at 1962.181 kb on - strand, within MPMX20_01867at 1962.213 kb on + strand, within MPMX20_01867at 1962.216 kb on - strand, within MPMX20_01867at 1962.252 kb on - strand, within MPMX20_01867at 1962.308 kb on + strand, within MPMX20_01867at 1962.308 kb on + strand, within MPMX20_01867at 1962.308 kb on + strand, within MPMX20_01867at 1962.316 kb on - strand, within MPMX20_01867at 1962.367 kb on + strand, within MPMX20_01867at 1962.454 kb on + strand, within MPMX20_01867at 1962.462 kb on - strand, within MPMX20_01867at 1962.462 kb on - strand, within MPMX20_01867at 1962.521 kb on - strandat 1962.545 kb on + strandat 1962.580 kb on + strandat 1962.632 kb on + strandat 1962.683 kb on - strandat 1962.685 kb on + strandat 1962.690 kb on + strandat 1962.698 kb on - strandat 1962.698 kb on - strandat 1962.698 kb on - strandat 1962.698 kb on - strandat 1962.698 kb on - strandat 1962.832 kb on + strand, within MPMX20_01868at 1962.856 kb on + strand, within MPMX20_01868at 1962.880 kb on - strand, within MPMX20_01868at 1962.960 kb on - strand, within MPMX20_01868at 1963.116 kb on + strand, within MPMX20_01868at 1963.123 kb on - strand, within MPMX20_01868at 1963.176 kb on + strand, within MPMX20_01868at 1963.203 kb on - strand, within MPMX20_01868at 1963.219 kb on - strand, within MPMX20_01868at 1963.289 kb on + strand, within MPMX20_01868at 1963.427 kb on + strand, within MPMX20_01868at 1963.498 kb on - strand, within MPMX20_01868at 1963.575 kb on - strand, within MPMX20_01868at 1963.621 kb on - strand, within MPMX20_01868at 1963.621 kb on - strand, within MPMX20_01868at 1963.623 kb on + strand, within MPMX20_01868at 1963.623 kb on + strand, within MPMX20_01868at 1963.623 kb on + strand, within MPMX20_01868at 1963.623 kb on + strand, within MPMX20_01868at 1963.631 kb on - strand, within MPMX20_01868at 1963.638 kb on - strand, within MPMX20_01868at 1963.656 kb on + strand, within MPMX20_01868at 1963.656 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.691 kb on + strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.699 kb on - strand, within MPMX20_01868at 1963.709 kb on - strand, within MPMX20_01868at 1963.726 kb on + strand, within MPMX20_01868at 1963.736 kb on + strand, within MPMX20_01868at 1963.736 kb on + strand, within MPMX20_01868at 1963.736 kb on + strand, within MPMX20_01868at 1963.744 kb on - strand, within MPMX20_01868at 1963.744 kb on - strand, within MPMX20_01868at 1963.786 kb on - strand, within MPMX20_01868at 1963.805 kb on + strand, within MPMX20_01868at 1963.810 kb on + strand, within MPMX20_01868at 1963.812 kb on + strand, within MPMX20_01868at 1963.812 kb on + strand, within MPMX20_01868at 1963.820 kb on - strand, within MPMX20_01868at 1963.856 kb on + strandat 1963.856 kb on + strandat 1963.864 kb on - strandat 1963.888 kb on - strandat 1963.952 kb on + strandat 1963.954 kb on - strandat 1964.016 kb on + strandat 1964.016 kb on + strandat 1964.024 kb on - strandat 1964.034 kb on - strandat 1964.084 kb on - strand, within MPMX20_01869at 1964.196 kb on - strand, within MPMX20_01869at 1964.198 kb on + strand, within MPMX20_01869at 1964.249 kb on - strand, within MPMX20_01869at 1964.271 kb on - strand, within MPMX20_01869at 1964.314 kb on + strand, within MPMX20_01869at 1964.357 kb on - strand, within MPMX20_01869at 1964.359 kb on + strand, within MPMX20_01869at 1964.453 kb on + strand, within MPMX20_01869at 1964.461 kb on - strand, within MPMX20_01869at 1964.481 kb on - strand, within MPMX20_01869at 1964.489 kb on + strand, within MPMX20_01869at 1964.489 kb on + strand, within MPMX20_01869at 1964.499 kb on + strand, within MPMX20_01869at 1964.521 kb on - strand, within MPMX20_01869at 1964.561 kb on - strand, within MPMX20_01869at 1964.585 kb on + strand, within MPMX20_01869at 1964.590 kb on + strand, within MPMX20_01869at 1964.606 kb on - strand, within MPMX20_01869at 1964.647 kb on - strand, within MPMX20_01869at 1964.655 kb on - strand, within MPMX20_01869at 1964.688 kb on - strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.773 kb on + strand, within MPMX20_01869at 1964.781 kb on - strand, within MPMX20_01869at 1964.781 kb on - strand, within MPMX20_01869at 1964.797 kb on + strand, within MPMX20_01869at 1964.816 kb on + strand, within MPMX20_01869at 1964.816 kb on + strand, within MPMX20_01869at 1964.827 kb on + strand, within MPMX20_01869at 1964.827 kb on + strand, within MPMX20_01869at 1964.847 kb on + strand, within MPMX20_01869at 1964.855 kb on + strandat 1964.870 kb on + strandat 1964.870 kb on + strandat 1964.881 kb on + strandat 1964.881 kb on + strandat 1964.881 kb on + strandat 1964.883 kb on + strandat 1964.883 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.884 kb on + strandat 1964.892 kb on - strandat 1964.892 kb on - strandat 1964.896 kb on + strandat 1964.897 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.901 kb on + strandat 1964.905 kb on - strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.906 kb on + strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.909 kb on - strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.918 kb on + strandat 1964.919 kb on + strandat 1964.926 kb on - strandat 1964.926 kb on - strandat 1964.927 kb on - strandat 1964.929 kb on + strandat 1964.929 kb on + strandat 1964.938 kb on + strandat 1964.946 kb on + strandat 1964.946 kb on + strandat 1964.954 kb on - strandat 1964.954 kb on - strandat 1964.956 kb on + strandat 1964.956 kb on + strandat 1964.960 kb on + strandat 1964.962 kb on + strandat 1964.962 kb on + strandat 1964.963 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,961,653 - MPMX20_01867 0.33 -1.3
1,961,752 + MPMX20_01867 0.39 -1.8
1,961,894 + MPMX20_01867 0.49 -2.3
1,961,969 - MPMX20_01867 0.54 -0.4
1,961,993 + MPMX20_01867 0.55 +0.8
1,962,028 + MPMX20_01867 0.58 +2.8
1,962,036 - MPMX20_01867 0.58 -0.9
1,962,041 - MPMX20_01867 0.59 -3.3
1,962,063 + MPMX20_01867 0.60 -0.4
1,962,079 + MPMX20_01867 0.61 -2.0
1,962,086 - MPMX20_01867 0.62 -0.2
1,962,088 - MPMX20_01867 0.62 -1.6
1,962,181 - MPMX20_01867 0.68 -2.9
1,962,213 + MPMX20_01867 0.70 -1.2
1,962,216 - MPMX20_01867 0.70 -3.4
1,962,252 - MPMX20_01867 0.73 +1.2
1,962,308 + MPMX20_01867 0.77 -0.9
1,962,308 + MPMX20_01867 0.77 -0.0
1,962,308 + MPMX20_01867 0.77 +0.4
1,962,316 - MPMX20_01867 0.77 -1.5
1,962,367 + MPMX20_01867 0.81 +0.4
1,962,454 + MPMX20_01867 0.86 -2.4
1,962,462 - MPMX20_01867 0.87 -1.0
1,962,462 - MPMX20_01867 0.87 -1.2
1,962,521 - -0.6
1,962,545 + +0.5
1,962,580 + -2.2
1,962,632 + -0.4
1,962,683 - +0.6
1,962,685 + -0.2
1,962,690 + -1.5
1,962,698 - -1.0
1,962,698 - -3.8
1,962,698 - -2.4
1,962,698 - -0.7
1,962,698 - +0.4
1,962,832 + MPMX20_01868 0.14 -1.6
1,962,856 + MPMX20_01868 0.16 -0.8
1,962,880 - MPMX20_01868 0.18 -2.4
1,962,960 - MPMX20_01868 0.24 -0.9
1,963,116 + MPMX20_01868 0.36 -2.2
1,963,123 - MPMX20_01868 0.36 -0.6
1,963,176 + MPMX20_01868 0.40 -1.8
1,963,203 - MPMX20_01868 0.42 -1.5
1,963,219 - MPMX20_01868 0.43 -0.9
1,963,289 + MPMX20_01868 0.49 -1.4
1,963,427 + MPMX20_01868 0.59 -0.8
1,963,498 - MPMX20_01868 0.64 -1.9
1,963,575 - MPMX20_01868 0.70 -2.5
1,963,621 - MPMX20_01868 0.74 -1.3
1,963,621 - MPMX20_01868 0.74 -0.6
1,963,623 + MPMX20_01868 0.74 -0.2
1,963,623 + MPMX20_01868 0.74 -1.3
1,963,623 + MPMX20_01868 0.74 -0.9
1,963,623 + MPMX20_01868 0.74 -0.9
1,963,631 - MPMX20_01868 0.75 -2.7
1,963,638 - MPMX20_01868 0.75 -3.1
1,963,656 + MPMX20_01868 0.76 -0.3
1,963,656 + MPMX20_01868 0.76 -1.4
1,963,691 + MPMX20_01868 0.79 -2.3
1,963,691 + MPMX20_01868 0.79 -0.9
1,963,691 + MPMX20_01868 0.79 -1.1
1,963,691 + MPMX20_01868 0.79 +1.8
1,963,691 + MPMX20_01868 0.79 -1.7
1,963,691 + MPMX20_01868 0.79 -1.9
1,963,691 + MPMX20_01868 0.79 +1.8
1,963,691 + MPMX20_01868 0.79 -1.2
1,963,691 + MPMX20_01868 0.79 -1.4
1,963,699 - MPMX20_01868 0.80 -1.8
1,963,699 - MPMX20_01868 0.80 -1.5
1,963,699 - MPMX20_01868 0.80 -2.1
1,963,699 - MPMX20_01868 0.80 +0.4
1,963,699 - MPMX20_01868 0.80 -0.0
1,963,699 - MPMX20_01868 0.80 -2.0
1,963,699 - MPMX20_01868 0.80 -1.3
1,963,699 - MPMX20_01868 0.80 -0.6
1,963,699 - MPMX20_01868 0.80 -0.0
1,963,709 - MPMX20_01868 0.80 -0.7
1,963,726 + MPMX20_01868 0.82 +0.4
1,963,736 + MPMX20_01868 0.82 +0.8
1,963,736 + MPMX20_01868 0.82 -2.3
1,963,736 + MPMX20_01868 0.82 -1.7
1,963,744 - MPMX20_01868 0.83 -2.4
1,963,744 - MPMX20_01868 0.83 -0.6
1,963,786 - MPMX20_01868 0.86 -0.7
1,963,805 + MPMX20_01868 0.88 -1.0
1,963,810 + MPMX20_01868 0.88 -0.6
1,963,812 + MPMX20_01868 0.88 -1.7
1,963,812 + MPMX20_01868 0.88 +0.2
1,963,820 - MPMX20_01868 0.89 -1.8
1,963,856 + -1.5
1,963,856 + +2.8
1,963,864 - -2.3
1,963,888 - -1.2
1,963,952 + -1.9
1,963,954 - -1.1
1,964,016 + -2.0
1,964,016 + -1.3
1,964,024 - -1.8
1,964,034 - -0.0
1,964,084 - MPMX20_01869 0.11 -1.7
1,964,196 - MPMX20_01869 0.22 -2.0
1,964,198 + MPMX20_01869 0.23 -3.3
1,964,249 - MPMX20_01869 0.28 -1.2
1,964,271 - MPMX20_01869 0.30 -0.8
1,964,314 + MPMX20_01869 0.35 -2.4
1,964,357 - MPMX20_01869 0.39 -1.5
1,964,359 + MPMX20_01869 0.39 -1.7
1,964,453 + MPMX20_01869 0.49 -3.0
1,964,461 - MPMX20_01869 0.50 -1.6
1,964,481 - MPMX20_01869 0.52 -0.2
1,964,489 + MPMX20_01869 0.53 +0.8
1,964,489 + MPMX20_01869 0.53 -2.3
1,964,499 + MPMX20_01869 0.54 -2.9
1,964,521 - MPMX20_01869 0.56 -1.3
1,964,561 - MPMX20_01869 0.60 -1.6
1,964,585 + MPMX20_01869 0.63 +1.2
1,964,590 + MPMX20_01869 0.63 -2.7
1,964,606 - MPMX20_01869 0.65 +1.4
1,964,647 - MPMX20_01869 0.69 -0.2
1,964,655 - MPMX20_01869 0.70 -0.6
1,964,688 - MPMX20_01869 0.73 -1.6
1,964,773 + MPMX20_01869 0.82 +1.2
1,964,773 + MPMX20_01869 0.82 +0.8
1,964,773 + MPMX20_01869 0.82 -1.9
1,964,773 + MPMX20_01869 0.82 -3.2
1,964,781 - MPMX20_01869 0.83 -2.8
1,964,781 - MPMX20_01869 0.83 -0.5
1,964,797 + MPMX20_01869 0.85 +1.2
1,964,816 + MPMX20_01869 0.87 -0.8
1,964,816 + MPMX20_01869 0.87 -0.2
1,964,827 + MPMX20_01869 0.88 +0.1
1,964,827 + MPMX20_01869 0.88 -1.8
1,964,847 + MPMX20_01869 0.90 +0.2
1,964,855 + -1.2
1,964,870 + +0.8
1,964,870 + -2.4
1,964,881 + -1.8
1,964,881 + -0.2
1,964,881 + -1.0
1,964,883 + -0.2
1,964,883 + -0.4
1,964,884 + -1.7
1,964,884 + +1.8
1,964,884 + +0.4
1,964,884 + -0.8
1,964,884 + -0.6
1,964,884 + +0.8
1,964,884 + -0.7
1,964,884 + -0.7
1,964,892 - -0.8
1,964,892 - -0.2
1,964,896 + +0.7
1,964,897 + -1.6
1,964,901 + -1.8
1,964,901 + -0.8
1,964,901 + -2.0
1,964,901 + -2.2
1,964,901 + -2.4
1,964,901 + -0.9
1,964,901 + -1.8
1,964,901 + -0.8
1,964,901 + -1.4
1,964,901 + -1.9
1,964,905 - -0.4
1,964,906 + +0.2
1,964,906 + +0.4
1,964,906 + -0.6
1,964,906 + +0.6
1,964,909 - -2.5
1,964,909 - -2.1
1,964,909 - -2.2
1,964,909 - -1.9
1,964,909 - -0.9
1,964,918 + -1.0
1,964,918 + -3.2
1,964,918 + -1.3
1,964,918 + +0.8
1,964,918 + -2.0
1,964,918 + +1.2
1,964,918 + -1.4
1,964,918 + +0.2
1,964,918 + -1.3
1,964,918 + +0.4
1,964,918 + -1.3
1,964,918 + -2.7
1,964,919 + -0.9
1,964,926 - +0.4
1,964,926 - -0.2
1,964,927 - -0.9
1,964,929 + -0.1
1,964,929 + +0.2
1,964,938 + -0.3
1,964,946 + +0.4
1,964,946 + +0.6
1,964,954 - +0.8
1,964,954 - +0.8
1,964,956 + -0.3
1,964,956 + +0.8
1,964,960 + +0.6
1,964,962 + +0.6
1,964,962 + -0.1
1,964,963 + -0.6

Or see this region's nucleotide sequence