Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01867 and MPMX20_01868 overlap by 14 nucleotides MPMX20_01868 and MPMX20_01869 are separated by 10 nucleotides
MPMX20_01867: MPMX20_01867 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 1,961,169 to 1,962,656
_01867
MPMX20_01868: MPMX20_01868 - N-succinylarginine dihydrolase, at 1,962,643 to 1,963,968
_01868
MPMX20_01869: MPMX20_01869 - Succinylglutamate desuccinylase, at 1,963,979 to 1,964,944
_01869
Position (kb)
1962
1963
1964 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1961.653 kb on - strand, within MPMX20_01867 at 1961.752 kb on + strand, within MPMX20_01867 at 1961.894 kb on + strand, within MPMX20_01867 at 1961.969 kb on - strand, within MPMX20_01867 at 1961.993 kb on + strand, within MPMX20_01867 at 1962.028 kb on + strand, within MPMX20_01867 at 1962.036 kb on - strand, within MPMX20_01867 at 1962.041 kb on - strand, within MPMX20_01867 at 1962.063 kb on + strand, within MPMX20_01867 at 1962.079 kb on + strand, within MPMX20_01867 at 1962.086 kb on - strand, within MPMX20_01867 at 1962.088 kb on - strand, within MPMX20_01867 at 1962.181 kb on - strand, within MPMX20_01867 at 1962.213 kb on + strand, within MPMX20_01867 at 1962.216 kb on - strand, within MPMX20_01867 at 1962.252 kb on - strand, within MPMX20_01867 at 1962.308 kb on + strand, within MPMX20_01867 at 1962.308 kb on + strand, within MPMX20_01867 at 1962.308 kb on + strand, within MPMX20_01867 at 1962.316 kb on - strand, within MPMX20_01867 at 1962.367 kb on + strand, within MPMX20_01867 at 1962.454 kb on + strand, within MPMX20_01867 at 1962.462 kb on - strand, within MPMX20_01867 at 1962.462 kb on - strand, within MPMX20_01867 at 1962.521 kb on - strand at 1962.545 kb on + strand at 1962.580 kb on + strand at 1962.632 kb on + strand at 1962.683 kb on - strand at 1962.685 kb on + strand at 1962.690 kb on + strand at 1962.698 kb on - strand at 1962.698 kb on - strand at 1962.698 kb on - strand at 1962.698 kb on - strand at 1962.698 kb on - strand at 1962.832 kb on + strand, within MPMX20_01868 at 1962.856 kb on + strand, within MPMX20_01868 at 1962.880 kb on - strand, within MPMX20_01868 at 1962.960 kb on - strand, within MPMX20_01868 at 1963.116 kb on + strand, within MPMX20_01868 at 1963.123 kb on - strand, within MPMX20_01868 at 1963.176 kb on + strand, within MPMX20_01868 at 1963.203 kb on - strand, within MPMX20_01868 at 1963.219 kb on - strand, within MPMX20_01868 at 1963.289 kb on + strand, within MPMX20_01868 at 1963.427 kb on + strand, within MPMX20_01868 at 1963.498 kb on - strand, within MPMX20_01868 at 1963.575 kb on - strand, within MPMX20_01868 at 1963.621 kb on - strand, within MPMX20_01868 at 1963.621 kb on - strand, within MPMX20_01868 at 1963.623 kb on + strand, within MPMX20_01868 at 1963.623 kb on + strand, within MPMX20_01868 at 1963.623 kb on + strand, within MPMX20_01868 at 1963.623 kb on + strand, within MPMX20_01868 at 1963.631 kb on - strand, within MPMX20_01868 at 1963.638 kb on - strand, within MPMX20_01868 at 1963.656 kb on + strand, within MPMX20_01868 at 1963.656 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.691 kb on + strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.699 kb on - strand, within MPMX20_01868 at 1963.709 kb on - strand, within MPMX20_01868 at 1963.726 kb on + strand, within MPMX20_01868 at 1963.736 kb on + strand, within MPMX20_01868 at 1963.736 kb on + strand, within MPMX20_01868 at 1963.736 kb on + strand, within MPMX20_01868 at 1963.744 kb on - strand, within MPMX20_01868 at 1963.744 kb on - strand, within MPMX20_01868 at 1963.786 kb on - strand, within MPMX20_01868 at 1963.805 kb on + strand, within MPMX20_01868 at 1963.810 kb on + strand, within MPMX20_01868 at 1963.812 kb on + strand, within MPMX20_01868 at 1963.812 kb on + strand, within MPMX20_01868 at 1963.820 kb on - strand, within MPMX20_01868 at 1963.856 kb on + strand at 1963.856 kb on + strand at 1963.864 kb on - strand at 1963.888 kb on - strand at 1963.952 kb on + strand at 1963.954 kb on - strand at 1964.016 kb on + strand at 1964.016 kb on + strand at 1964.024 kb on - strand at 1964.034 kb on - strand at 1964.084 kb on - strand, within MPMX20_01869 at 1964.196 kb on - strand, within MPMX20_01869 at 1964.198 kb on + strand, within MPMX20_01869 at 1964.249 kb on - strand, within MPMX20_01869 at 1964.271 kb on - strand, within MPMX20_01869 at 1964.314 kb on + strand, within MPMX20_01869 at 1964.357 kb on - strand, within MPMX20_01869 at 1964.359 kb on + strand, within MPMX20_01869 at 1964.453 kb on + strand, within MPMX20_01869 at 1964.461 kb on - strand, within MPMX20_01869 at 1964.481 kb on - strand, within MPMX20_01869 at 1964.489 kb on + strand, within MPMX20_01869 at 1964.489 kb on + strand, within MPMX20_01869 at 1964.499 kb on + strand, within MPMX20_01869 at 1964.521 kb on - strand, within MPMX20_01869 at 1964.561 kb on - strand, within MPMX20_01869 at 1964.585 kb on + strand, within MPMX20_01869 at 1964.590 kb on + strand, within MPMX20_01869 at 1964.606 kb on - strand, within MPMX20_01869 at 1964.647 kb on - strand, within MPMX20_01869 at 1964.655 kb on - strand, within MPMX20_01869 at 1964.688 kb on - strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.773 kb on + strand, within MPMX20_01869 at 1964.781 kb on - strand, within MPMX20_01869 at 1964.781 kb on - strand, within MPMX20_01869 at 1964.797 kb on + strand, within MPMX20_01869 at 1964.816 kb on + strand, within MPMX20_01869 at 1964.816 kb on + strand, within MPMX20_01869 at 1964.827 kb on + strand, within MPMX20_01869 at 1964.827 kb on + strand, within MPMX20_01869 at 1964.847 kb on + strand, within MPMX20_01869 at 1964.855 kb on + strand at 1964.870 kb on + strand at 1964.870 kb on + strand at 1964.881 kb on + strand at 1964.881 kb on + strand at 1964.881 kb on + strand at 1964.883 kb on + strand at 1964.883 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.884 kb on + strand at 1964.892 kb on - strand at 1964.892 kb on - strand at 1964.896 kb on + strand at 1964.897 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.901 kb on + strand at 1964.905 kb on - strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.906 kb on + strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.909 kb on - strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.918 kb on + strand at 1964.919 kb on + strand at 1964.926 kb on - strand at 1964.926 kb on - strand at 1964.927 kb on - strand at 1964.929 kb on + strand at 1964.929 kb on + strand at 1964.938 kb on + strand at 1964.946 kb on + strand at 1964.946 kb on + strand at 1964.954 kb on - strand at 1964.954 kb on - strand at 1964.956 kb on + strand at 1964.956 kb on + strand at 1964.960 kb on + strand at 1964.962 kb on + strand at 1964.962 kb on + strand at 1964.963 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 1,961,653 - MPMX20_01867 0.33 -1.3 1,961,752 + MPMX20_01867 0.39 -1.8 1,961,894 + MPMX20_01867 0.49 -2.3 1,961,969 - MPMX20_01867 0.54 -0.4 1,961,993 + MPMX20_01867 0.55 +0.8 1,962,028 + MPMX20_01867 0.58 +2.8 1,962,036 - MPMX20_01867 0.58 -0.9 1,962,041 - MPMX20_01867 0.59 -3.3 1,962,063 + MPMX20_01867 0.60 -0.4 1,962,079 + MPMX20_01867 0.61 -2.0 1,962,086 - MPMX20_01867 0.62 -0.2 1,962,088 - MPMX20_01867 0.62 -1.6 1,962,181 - MPMX20_01867 0.68 -2.9 1,962,213 + MPMX20_01867 0.70 -1.2 1,962,216 - MPMX20_01867 0.70 -3.4 1,962,252 - MPMX20_01867 0.73 +1.2 1,962,308 + MPMX20_01867 0.77 -0.9 1,962,308 + MPMX20_01867 0.77 -0.0 1,962,308 + MPMX20_01867 0.77 +0.4 1,962,316 - MPMX20_01867 0.77 -1.5 1,962,367 + MPMX20_01867 0.81 +0.4 1,962,454 + MPMX20_01867 0.86 -2.4 1,962,462 - MPMX20_01867 0.87 -1.0 1,962,462 - MPMX20_01867 0.87 -1.2 1,962,521 - -0.6 1,962,545 + +0.5 1,962,580 + -2.2 1,962,632 + -0.4 1,962,683 - +0.6 1,962,685 + -0.2 1,962,690 + -1.5 1,962,698 - -1.0 1,962,698 - -3.8 1,962,698 - -2.4 1,962,698 - -0.7 1,962,698 - +0.4 1,962,832 + MPMX20_01868 0.14 -1.6 1,962,856 + MPMX20_01868 0.16 -0.8 1,962,880 - MPMX20_01868 0.18 -2.4 1,962,960 - MPMX20_01868 0.24 -0.9 1,963,116 + MPMX20_01868 0.36 -2.2 1,963,123 - MPMX20_01868 0.36 -0.6 1,963,176 + MPMX20_01868 0.40 -1.8 1,963,203 - MPMX20_01868 0.42 -1.5 1,963,219 - MPMX20_01868 0.43 -0.9 1,963,289 + MPMX20_01868 0.49 -1.4 1,963,427 + MPMX20_01868 0.59 -0.8 1,963,498 - MPMX20_01868 0.64 -1.9 1,963,575 - MPMX20_01868 0.70 -2.5 1,963,621 - MPMX20_01868 0.74 -1.3 1,963,621 - MPMX20_01868 0.74 -0.6 1,963,623 + MPMX20_01868 0.74 -0.2 1,963,623 + MPMX20_01868 0.74 -1.3 1,963,623 + MPMX20_01868 0.74 -0.9 1,963,623 + MPMX20_01868 0.74 -0.9 1,963,631 - MPMX20_01868 0.75 -2.7 1,963,638 - MPMX20_01868 0.75 -3.1 1,963,656 + MPMX20_01868 0.76 -0.3 1,963,656 + MPMX20_01868 0.76 -1.4 1,963,691 + MPMX20_01868 0.79 -2.3 1,963,691 + MPMX20_01868 0.79 -0.9 1,963,691 + MPMX20_01868 0.79 -1.1 1,963,691 + MPMX20_01868 0.79 +1.8 1,963,691 + MPMX20_01868 0.79 -1.7 1,963,691 + MPMX20_01868 0.79 -1.9 1,963,691 + MPMX20_01868 0.79 +1.8 1,963,691 + MPMX20_01868 0.79 -1.2 1,963,691 + MPMX20_01868 0.79 -1.4 1,963,699 - MPMX20_01868 0.80 -1.8 1,963,699 - MPMX20_01868 0.80 -1.5 1,963,699 - MPMX20_01868 0.80 -2.1 1,963,699 - MPMX20_01868 0.80 +0.4 1,963,699 - MPMX20_01868 0.80 -0.0 1,963,699 - MPMX20_01868 0.80 -2.0 1,963,699 - MPMX20_01868 0.80 -1.3 1,963,699 - MPMX20_01868 0.80 -0.6 1,963,699 - MPMX20_01868 0.80 -0.0 1,963,709 - MPMX20_01868 0.80 -0.7 1,963,726 + MPMX20_01868 0.82 +0.4 1,963,736 + MPMX20_01868 0.82 +0.8 1,963,736 + MPMX20_01868 0.82 -2.3 1,963,736 + MPMX20_01868 0.82 -1.7 1,963,744 - MPMX20_01868 0.83 -2.4 1,963,744 - MPMX20_01868 0.83 -0.6 1,963,786 - MPMX20_01868 0.86 -0.7 1,963,805 + MPMX20_01868 0.88 -1.0 1,963,810 + MPMX20_01868 0.88 -0.6 1,963,812 + MPMX20_01868 0.88 -1.7 1,963,812 + MPMX20_01868 0.88 +0.2 1,963,820 - MPMX20_01868 0.89 -1.8 1,963,856 + -1.5 1,963,856 + +2.8 1,963,864 - -2.3 1,963,888 - -1.2 1,963,952 + -1.9 1,963,954 - -1.1 1,964,016 + -2.0 1,964,016 + -1.3 1,964,024 - -1.8 1,964,034 - -0.0 1,964,084 - MPMX20_01869 0.11 -1.7 1,964,196 - MPMX20_01869 0.22 -2.0 1,964,198 + MPMX20_01869 0.23 -3.3 1,964,249 - MPMX20_01869 0.28 -1.2 1,964,271 - MPMX20_01869 0.30 -0.8 1,964,314 + MPMX20_01869 0.35 -2.4 1,964,357 - MPMX20_01869 0.39 -1.5 1,964,359 + MPMX20_01869 0.39 -1.7 1,964,453 + MPMX20_01869 0.49 -3.0 1,964,461 - MPMX20_01869 0.50 -1.6 1,964,481 - MPMX20_01869 0.52 -0.2 1,964,489 + MPMX20_01869 0.53 +0.8 1,964,489 + MPMX20_01869 0.53 -2.3 1,964,499 + MPMX20_01869 0.54 -2.9 1,964,521 - MPMX20_01869 0.56 -1.3 1,964,561 - MPMX20_01869 0.60 -1.6 1,964,585 + MPMX20_01869 0.63 +1.2 1,964,590 + MPMX20_01869 0.63 -2.7 1,964,606 - MPMX20_01869 0.65 +1.4 1,964,647 - MPMX20_01869 0.69 -0.2 1,964,655 - MPMX20_01869 0.70 -0.6 1,964,688 - MPMX20_01869 0.73 -1.6 1,964,773 + MPMX20_01869 0.82 +1.2 1,964,773 + MPMX20_01869 0.82 +0.8 1,964,773 + MPMX20_01869 0.82 -1.9 1,964,773 + MPMX20_01869 0.82 -3.2 1,964,781 - MPMX20_01869 0.83 -2.8 1,964,781 - MPMX20_01869 0.83 -0.5 1,964,797 + MPMX20_01869 0.85 +1.2 1,964,816 + MPMX20_01869 0.87 -0.8 1,964,816 + MPMX20_01869 0.87 -0.2 1,964,827 + MPMX20_01869 0.88 +0.1 1,964,827 + MPMX20_01869 0.88 -1.8 1,964,847 + MPMX20_01869 0.90 +0.2 1,964,855 + -1.2 1,964,870 + +0.8 1,964,870 + -2.4 1,964,881 + -1.8 1,964,881 + -0.2 1,964,881 + -1.0 1,964,883 + -0.2 1,964,883 + -0.4 1,964,884 + -1.7 1,964,884 + +1.8 1,964,884 + +0.4 1,964,884 + -0.8 1,964,884 + -0.6 1,964,884 + +0.8 1,964,884 + -0.7 1,964,884 + -0.7 1,964,892 - -0.8 1,964,892 - -0.2 1,964,896 + +0.7 1,964,897 + -1.6 1,964,901 + -1.8 1,964,901 + -0.8 1,964,901 + -2.0 1,964,901 + -2.2 1,964,901 + -2.4 1,964,901 + -0.9 1,964,901 + -1.8 1,964,901 + -0.8 1,964,901 + -1.4 1,964,901 + -1.9 1,964,905 - -0.4 1,964,906 + +0.2 1,964,906 + +0.4 1,964,906 + -0.6 1,964,906 + +0.6 1,964,909 - -2.5 1,964,909 - -2.1 1,964,909 - -2.2 1,964,909 - -1.9 1,964,909 - -0.9 1,964,918 + -1.0 1,964,918 + -3.2 1,964,918 + -1.3 1,964,918 + +0.8 1,964,918 + -2.0 1,964,918 + +1.2 1,964,918 + -1.4 1,964,918 + +0.2 1,964,918 + -1.3 1,964,918 + +0.4 1,964,918 + -1.3 1,964,918 + -2.7 1,964,919 + -0.9 1,964,926 - +0.4 1,964,926 - -0.2 1,964,927 - -0.9 1,964,929 + -0.1 1,964,929 + +0.2 1,964,938 + -0.3 1,964,946 + +0.4 1,964,946 + +0.6 1,964,954 - +0.8 1,964,954 - +0.8 1,964,956 + -0.3 1,964,956 + +0.8 1,964,960 + +0.6 1,964,962 + +0.6 1,964,962 + -0.1 1,964,963 + -0.6
Or see this region's nucleotide sequence