Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01866

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01865 and MPMX20_01866 overlap by 4 nucleotidesMPMX20_01866 and MPMX20_01867 overlap by 4 nucleotides MPMX20_01865: MPMX20_01865 - Succinylornithine transaminase, at 1,958,921 to 1,960,141 _01865 MPMX20_01866: MPMX20_01866 - Arginine N-succinyltransferase, at 1,960,138 to 1,961,172 _01866 MPMX20_01867: MPMX20_01867 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 1,961,169 to 1,962,656 _01867 Position (kb) 1960 1961 1962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1959.167 kb on + strand, within MPMX20_01865at 1959.167 kb on + strand, within MPMX20_01865at 1959.195 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.254 kb on + strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.262 kb on - strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.309 kb on + strand, within MPMX20_01865at 1959.312 kb on - strand, within MPMX20_01865at 1959.317 kb on - strand, within MPMX20_01865at 1959.476 kb on - strand, within MPMX20_01865at 1959.497 kb on - strand, within MPMX20_01865at 1959.499 kb on + strand, within MPMX20_01865at 1959.499 kb on + strand, within MPMX20_01865at 1959.502 kb on - strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.593 kb on + strand, within MPMX20_01865at 1959.630 kb on - strand, within MPMX20_01865at 1959.645 kb on + strand, within MPMX20_01865at 1959.702 kb on + strand, within MPMX20_01865at 1959.710 kb on - strand, within MPMX20_01865at 1959.710 kb on - strand, within MPMX20_01865at 1959.756 kb on + strand, within MPMX20_01865at 1959.756 kb on + strand, within MPMX20_01865at 1959.763 kb on + strand, within MPMX20_01865at 1959.764 kb on - strand, within MPMX20_01865at 1959.768 kb on + strand, within MPMX20_01865at 1959.776 kb on - strand, within MPMX20_01865at 1959.830 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.832 kb on + strand, within MPMX20_01865at 1959.840 kb on - strand, within MPMX20_01865at 1959.848 kb on - strand, within MPMX20_01865at 1959.859 kb on - strand, within MPMX20_01865at 1959.882 kb on - strand, within MPMX20_01865at 1959.882 kb on - strand, within MPMX20_01865at 1959.904 kb on + strand, within MPMX20_01865at 1959.904 kb on + strand, within MPMX20_01865at 1959.912 kb on - strand, within MPMX20_01865at 1959.913 kb on + strand, within MPMX20_01865at 1960.093 kb on - strandat 1960.095 kb on + strandat 1960.100 kb on + strandat 1960.110 kb on + strandat 1960.113 kb on - strandat 1960.118 kb on - strandat 1960.208 kb on - strandat 1960.275 kb on - strand, within MPMX20_01866at 1960.398 kb on - strand, within MPMX20_01866at 1960.427 kb on + strand, within MPMX20_01866at 1960.435 kb on - strand, within MPMX20_01866at 1960.515 kb on + strand, within MPMX20_01866at 1960.882 kb on - strand, within MPMX20_01866at 1960.909 kb on + strand, within MPMX20_01866at 1960.917 kb on - strand, within MPMX20_01866at 1961.145 kb on + strandat 1961.153 kb on - strandat 1961.157 kb on + strandat 1961.165 kb on - strandat 1961.233 kb on - strandat 1961.239 kb on + strandat 1961.239 kb on + strandat 1961.247 kb on - strandat 1961.247 kb on - strandat 1961.272 kb on + strandat 1961.324 kb on - strand, within MPMX20_01867at 1961.400 kb on + strand, within MPMX20_01867at 1961.626 kb on + strand, within MPMX20_01867at 1961.634 kb on - strand, within MPMX20_01867at 1961.653 kb on - strand, within MPMX20_01867at 1961.752 kb on + strand, within MPMX20_01867at 1961.894 kb on + strand, within MPMX20_01867at 1961.969 kb on - strand, within MPMX20_01867at 1961.993 kb on + strand, within MPMX20_01867at 1962.028 kb on + strand, within MPMX20_01867at 1962.036 kb on - strand, within MPMX20_01867at 1962.041 kb on - strand, within MPMX20_01867at 1962.063 kb on + strand, within MPMX20_01867at 1962.079 kb on + strand, within MPMX20_01867at 1962.086 kb on - strand, within MPMX20_01867at 1962.088 kb on - strand, within MPMX20_01867

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,959,167 + MPMX20_01865 0.20 -2.2
1,959,167 + MPMX20_01865 0.20 -1.5
1,959,195 + MPMX20_01865 0.22 -1.0
1,959,254 + MPMX20_01865 0.27 -2.0
1,959,254 + MPMX20_01865 0.27 -1.9
1,959,262 - MPMX20_01865 0.28 -2.0
1,959,262 - MPMX20_01865 0.28 -0.8
1,959,309 + MPMX20_01865 0.32 -1.5
1,959,309 + MPMX20_01865 0.32 -0.2
1,959,312 - MPMX20_01865 0.32 -1.8
1,959,317 - MPMX20_01865 0.32 -1.5
1,959,476 - MPMX20_01865 0.45 -1.0
1,959,497 - MPMX20_01865 0.47 -1.5
1,959,499 + MPMX20_01865 0.47 -0.4
1,959,499 + MPMX20_01865 0.47 -1.0
1,959,502 - MPMX20_01865 0.48 -0.0
1,959,593 + MPMX20_01865 0.55 -1.9
1,959,593 + MPMX20_01865 0.55 +0.8
1,959,593 + MPMX20_01865 0.55 -0.6
1,959,630 - MPMX20_01865 0.58 -2.4
1,959,645 + MPMX20_01865 0.59 +0.2
1,959,702 + MPMX20_01865 0.64 -0.0
1,959,710 - MPMX20_01865 0.65 -1.6
1,959,710 - MPMX20_01865 0.65 -0.5
1,959,756 + MPMX20_01865 0.68 -2.3
1,959,756 + MPMX20_01865 0.68 -1.6
1,959,763 + MPMX20_01865 0.69 -1.8
1,959,764 - MPMX20_01865 0.69 +0.6
1,959,768 + MPMX20_01865 0.69 -2.1
1,959,776 - MPMX20_01865 0.70 -1.0
1,959,830 + MPMX20_01865 0.74 -1.4
1,959,832 + MPMX20_01865 0.75 -2.0
1,959,832 + MPMX20_01865 0.75 -2.2
1,959,832 + MPMX20_01865 0.75 +0.2
1,959,840 - MPMX20_01865 0.75 +1.2
1,959,848 - MPMX20_01865 0.76 -0.9
1,959,859 - MPMX20_01865 0.77 -1.0
1,959,882 - MPMX20_01865 0.79 -1.4
1,959,882 - MPMX20_01865 0.79 -0.9
1,959,904 + MPMX20_01865 0.81 -0.0
1,959,904 + MPMX20_01865 0.81 -1.0
1,959,912 - MPMX20_01865 0.81 +0.4
1,959,913 + MPMX20_01865 0.81 -1.8
1,960,093 - -1.4
1,960,095 + +0.4
1,960,100 + +0.2
1,960,110 + -2.2
1,960,113 - -2.7
1,960,118 - +0.8
1,960,208 - -2.9
1,960,275 - MPMX20_01866 0.13 -1.6
1,960,398 - MPMX20_01866 0.25 -1.8
1,960,427 + MPMX20_01866 0.28 +0.6
1,960,435 - MPMX20_01866 0.29 +1.2
1,960,515 + MPMX20_01866 0.36 +0.2
1,960,882 - MPMX20_01866 0.72 +0.5
1,960,909 + MPMX20_01866 0.74 -1.5
1,960,917 - MPMX20_01866 0.75 -0.7
1,961,145 + -0.0
1,961,153 - -2.9
1,961,157 + -2.7
1,961,165 - +1.8
1,961,233 - -0.4
1,961,239 + -1.1
1,961,239 + -0.4
1,961,247 - -1.7
1,961,247 - -0.5
1,961,272 + -0.6
1,961,324 - MPMX20_01867 0.10 +1.8
1,961,400 + MPMX20_01867 0.16 -3.2
1,961,626 + MPMX20_01867 0.31 -0.6
1,961,634 - MPMX20_01867 0.31 -2.3
1,961,653 - MPMX20_01867 0.33 -1.3
1,961,752 + MPMX20_01867 0.39 -1.8
1,961,894 + MPMX20_01867 0.49 -2.3
1,961,969 - MPMX20_01867 0.54 -0.4
1,961,993 + MPMX20_01867 0.55 +0.8
1,962,028 + MPMX20_01867 0.58 +2.8
1,962,036 - MPMX20_01867 0.58 -0.9
1,962,041 - MPMX20_01867 0.59 -3.3
1,962,063 + MPMX20_01867 0.60 -0.4
1,962,079 + MPMX20_01867 0.61 -2.0
1,962,086 - MPMX20_01867 0.62 -0.2
1,962,088 - MPMX20_01867 0.62 -1.6

Or see this region's nucleotide sequence