Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01847 and MPMX20_01848 are separated by 170 nucleotides MPMX20_01848 and MPMX20_01849 are separated by 9 nucleotides MPMX20_01849 and MPMX20_01850 are separated by 63 nucleotides
MPMX20_01847: MPMX20_01847 - Chitinase A1, at 1,939,982 to 1,941,241
_01847
MPMX20_01848: MPMX20_01848 - Nicotinamidase, at 1,941,412 to 1,942,053
_01848
MPMX20_01849: MPMX20_01849 - L-asparaginase 1, at 1,942,063 to 1,943,079
_01849
MPMX20_01850: MPMX20_01850 - Protease 4, at 1,943,143 to 1,944,999
_01850
Position (kb)
1942
1943
1944 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1941.064 kb on + strand, within MPMX20_01847 at 1941.142 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.170 kb on + strand at 1941.178 kb on - strand at 1941.178 kb on - strand at 1941.203 kb on + strand at 1941.338 kb on + strand at 1941.346 kb on - strand at 1941.384 kb on - strand at 1941.389 kb on - strand at 1941.394 kb on - strand at 1941.410 kb on + strand at 1941.410 kb on + strand at 1941.418 kb on - strand at 1941.418 kb on - strand at 1941.435 kb on + strand at 1941.443 kb on - strand at 1941.443 kb on - strand at 1941.450 kb on - strand at 1941.453 kb on - strand at 1941.483 kb on + strand, within MPMX20_01848 at 1941.491 kb on - strand, within MPMX20_01848 at 1941.501 kb on - strand, within MPMX20_01848 at 1941.501 kb on - strand, within MPMX20_01848 at 1941.543 kb on + strand, within MPMX20_01848 at 1941.545 kb on + strand, within MPMX20_01848 at 1941.555 kb on + strand, within MPMX20_01848 at 1941.573 kb on + strand, within MPMX20_01848 at 1941.601 kb on - strand, within MPMX20_01848 at 1941.830 kb on + strand, within MPMX20_01848 at 1941.838 kb on - strand, within MPMX20_01848 at 1941.838 kb on - strand, within MPMX20_01848 at 1941.840 kb on + strand, within MPMX20_01848 at 1941.847 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.849 kb on + strand, within MPMX20_01848 at 1941.855 kb on - strand, within MPMX20_01848 at 1941.857 kb on - strand, within MPMX20_01848 at 1941.857 kb on - strand, within MPMX20_01848 at 1941.929 kb on + strand, within MPMX20_01848 at 1941.960 kb on + strand, within MPMX20_01848 at 1941.983 kb on + strand, within MPMX20_01848 at 1942.139 kb on - strand at 1942.178 kb on - strand, within MPMX20_01849 at 1942.374 kb on - strand, within MPMX20_01849 at 1942.407 kb on + strand, within MPMX20_01849 at 1942.449 kb on + strand, within MPMX20_01849 at 1942.532 kb on + strand, within MPMX20_01849 at 1942.561 kb on + strand, within MPMX20_01849 at 1942.569 kb on + strand, within MPMX20_01849 at 1942.583 kb on + strand, within MPMX20_01849 at 1942.672 kb on - strand, within MPMX20_01849 at 1942.767 kb on + strand, within MPMX20_01849 at 1942.767 kb on + strand, within MPMX20_01849 at 1942.769 kb on + strand, within MPMX20_01849 at 1942.774 kb on + strand, within MPMX20_01849 at 1942.779 kb on + strand, within MPMX20_01849 at 1942.821 kb on + strand, within MPMX20_01849 at 1942.829 kb on + strand, within MPMX20_01849 at 1942.851 kb on + strand, within MPMX20_01849 at 1942.962 kb on - strand, within MPMX20_01849 at 1942.970 kb on + strand, within MPMX20_01849 at 1943.026 kb on + strand at 1943.043 kb on + strand at 1943.048 kb on + strand at 1943.048 kb on + strand at 1943.051 kb on - strand at 1943.056 kb on - strand at 1943.089 kb on - strand at 1943.151 kb on + strand at 1943.151 kb on + strand at 1943.151 kb on + strand at 1943.151 kb on + strand at 1943.159 kb on - strand at 1943.161 kb on + strand at 1943.161 kb on + strand at 1943.169 kb on - strand at 1943.180 kb on - strand at 1943.182 kb on + strand at 1943.194 kb on + strand at 1943.202 kb on - strand at 1943.231 kb on + strand at 1943.266 kb on + strand at 1943.308 kb on - strand at 1943.322 kb on - strand at 1943.358 kb on - strand, within MPMX20_01850 at 1943.368 kb on - strand, within MPMX20_01850 at 1943.370 kb on + strand, within MPMX20_01850 at 1943.370 kb on + strand, within MPMX20_01850 at 1943.377 kb on - strand, within MPMX20_01850 at 1943.426 kb on - strand, within MPMX20_01850 at 1943.446 kb on - strand, within MPMX20_01850 at 1943.460 kb on - strand, within MPMX20_01850 at 1943.460 kb on - strand, within MPMX20_01850 at 1943.462 kb on + strand, within MPMX20_01850 at 1943.462 kb on + strand, within MPMX20_01850 at 1943.462 kb on + strand, within MPMX20_01850 at 1943.462 kb on + strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.470 kb on - strand, within MPMX20_01850 at 1943.475 kb on - strand, within MPMX20_01850 at 1943.481 kb on - strand, within MPMX20_01850 at 1943.494 kb on + strand, within MPMX20_01850 at 1943.558 kb on + strand, within MPMX20_01850 at 1943.566 kb on - strand, within MPMX20_01850 at 1943.681 kb on + strand, within MPMX20_01850 at 1943.681 kb on + strand, within MPMX20_01850 at 1943.681 kb on + strand, within MPMX20_01850 at 1943.691 kb on + strand, within MPMX20_01850 at 1943.720 kb on + strand, within MPMX20_01850 at 1943.871 kb on + strand, within MPMX20_01850 at 1943.890 kb on + strand, within MPMX20_01850 at 1943.892 kb on + strand, within MPMX20_01850 at 1943.983 kb on + strand, within MPMX20_01850
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 1,941,064 + MPMX20_01847 0.86 -1.3 1,941,142 + +0.8 1,941,170 + +0.6 1,941,170 + +0.8 1,941,170 + -0.5 1,941,170 + +0.0 1,941,178 - -1.9 1,941,178 - +1.8 1,941,203 + +1.2 1,941,338 + +0.8 1,941,346 - -0.3 1,941,384 - -1.4 1,941,389 - +0.2 1,941,394 - -1.4 1,941,410 + -1.4 1,941,410 + -0.4 1,941,418 - -1.9 1,941,418 - -0.1 1,941,435 + +0.6 1,941,443 - +0.6 1,941,443 - -1.5 1,941,450 - -0.7 1,941,453 - -0.7 1,941,483 + MPMX20_01848 0.11 -0.4 1,941,491 - MPMX20_01848 0.12 +2.0 1,941,501 - MPMX20_01848 0.14 +0.9 1,941,501 - MPMX20_01848 0.14 -0.1 1,941,543 + MPMX20_01848 0.20 -0.8 1,941,545 + MPMX20_01848 0.21 -0.4 1,941,555 + MPMX20_01848 0.22 -0.8 1,941,573 + MPMX20_01848 0.25 +0.9 1,941,601 - MPMX20_01848 0.29 -0.2 1,941,830 + MPMX20_01848 0.65 +0.5 1,941,838 - MPMX20_01848 0.66 +0.6 1,941,838 - MPMX20_01848 0.66 -1.2 1,941,840 + MPMX20_01848 0.67 -1.4 1,941,847 + MPMX20_01848 0.68 -0.1 1,941,849 + MPMX20_01848 0.68 +2.2 1,941,849 + MPMX20_01848 0.68 -0.2 1,941,849 + MPMX20_01848 0.68 -0.4 1,941,849 + MPMX20_01848 0.68 -0.8 1,941,855 - MPMX20_01848 0.69 -1.5 1,941,857 - MPMX20_01848 0.69 -1.0 1,941,857 - MPMX20_01848 0.69 +0.2 1,941,929 + MPMX20_01848 0.81 -0.7 1,941,960 + MPMX20_01848 0.85 -0.5 1,941,983 + MPMX20_01848 0.89 -0.6 1,942,139 - -0.2 1,942,178 - MPMX20_01849 0.11 -0.7 1,942,374 - MPMX20_01849 0.31 +0.2 1,942,407 + MPMX20_01849 0.34 +0.2 1,942,449 + MPMX20_01849 0.38 -1.5 1,942,532 + MPMX20_01849 0.46 -0.2 1,942,561 + MPMX20_01849 0.49 -2.4 1,942,569 + MPMX20_01849 0.50 +1.3 1,942,583 + MPMX20_01849 0.51 -0.8 1,942,672 - MPMX20_01849 0.60 -1.5 1,942,767 + MPMX20_01849 0.69 -0.7 1,942,767 + MPMX20_01849 0.69 +0.8 1,942,769 + MPMX20_01849 0.69 -0.4 1,942,774 + MPMX20_01849 0.70 -0.8 1,942,779 + MPMX20_01849 0.70 -0.4 1,942,821 + MPMX20_01849 0.75 -0.4 1,942,829 + MPMX20_01849 0.75 -1.6 1,942,851 + MPMX20_01849 0.77 -0.4 1,942,962 - MPMX20_01849 0.88 -0.5 1,942,970 + MPMX20_01849 0.89 -0.4 1,943,026 + -1.0 1,943,043 + +2.2 1,943,048 + +0.3 1,943,048 + -1.7 1,943,051 - +0.2 1,943,056 - +0.8 1,943,089 - +1.8 1,943,151 + -1.0 1,943,151 + -0.0 1,943,151 + -0.4 1,943,151 + -0.4 1,943,159 - +0.8 1,943,161 + -0.6 1,943,161 + -1.0 1,943,169 - -1.6 1,943,180 - +0.1 1,943,182 + -0.6 1,943,194 + +0.8 1,943,202 - -0.0 1,943,231 + +0.4 1,943,266 + -0.5 1,943,308 - -1.0 1,943,322 - +1.8 1,943,358 - MPMX20_01850 0.12 -0.9 1,943,368 - MPMX20_01850 0.12 -1.5 1,943,370 + MPMX20_01850 0.12 +0.2 1,943,370 + MPMX20_01850 0.12 +0.2 1,943,377 - MPMX20_01850 0.13 -2.2 1,943,426 - MPMX20_01850 0.15 -0.3 1,943,446 - MPMX20_01850 0.16 +2.8 1,943,460 - MPMX20_01850 0.17 -0.5 1,943,460 - MPMX20_01850 0.17 +0.2 1,943,462 + MPMX20_01850 0.17 -1.3 1,943,462 + MPMX20_01850 0.17 -1.0 1,943,462 + MPMX20_01850 0.17 -0.8 1,943,462 + MPMX20_01850 0.17 -0.4 1,943,470 - MPMX20_01850 0.18 +0.4 1,943,470 - MPMX20_01850 0.18 -1.6 1,943,470 - MPMX20_01850 0.18 -0.7 1,943,470 - MPMX20_01850 0.18 +0.6 1,943,470 - MPMX20_01850 0.18 +0.0 1,943,470 - MPMX20_01850 0.18 +0.8 1,943,470 - MPMX20_01850 0.18 -1.0 1,943,475 - MPMX20_01850 0.18 -0.7 1,943,481 - MPMX20_01850 0.18 +0.2 1,943,494 + MPMX20_01850 0.19 -1.9 1,943,558 + MPMX20_01850 0.22 +0.2 1,943,566 - MPMX20_01850 0.23 -1.4 1,943,681 + MPMX20_01850 0.29 +0.4 1,943,681 + MPMX20_01850 0.29 -1.5 1,943,681 + MPMX20_01850 0.29 -0.2 1,943,691 + MPMX20_01850 0.30 -0.9 1,943,720 + MPMX20_01850 0.31 +0.3 1,943,871 + MPMX20_01850 0.39 +0.2 1,943,890 + MPMX20_01850 0.40 +1.0 1,943,892 + MPMX20_01850 0.40 -2.6 1,943,983 + MPMX20_01850 0.45 -0.2
Or see this region's nucleotide sequence