Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01021

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01019 and MPMX20_01020 are separated by 11 nucleotidesMPMX20_01020 and MPMX20_01021 overlap by 1 nucleotidesMPMX20_01021 and MPMX20_01022 are separated by 88 nucleotides MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827 _01019 MPMX20_01020: MPMX20_01020 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,072,839 to 1,073,165 _01020 MPMX20_01021: MPMX20_01021 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,073,165 to 1,073,680 _01021 MPMX20_01022: MPMX20_01022 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,073,769 to 1,075,760 _01022 Position (kb) 1073 1074Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1072.247 kb on + strand, within MPMX20_01019at 1072.303 kb on - strand, within MPMX20_01019at 1072.328 kb on - strand, within MPMX20_01019at 1072.352 kb on - strand, within MPMX20_01019at 1072.504 kb on + strand, within MPMX20_01019at 1072.523 kb on + strand, within MPMX20_01019at 1072.603 kb on - strand, within MPMX20_01019at 1072.694 kb on + strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.709 kb on + strand, within MPMX20_01019at 1072.735 kb on + strand, within MPMX20_01019at 1072.846 kb on + strandat 1073.130 kb on + strand, within MPMX20_01020at 1073.130 kb on + strand, within MPMX20_01020at 1073.138 kb on - strandat 1073.204 kb on + strandat 1073.212 kb on - strandat 1073.260 kb on + strand, within MPMX20_01021at 1073.278 kb on - strand, within MPMX20_01021at 1073.315 kb on + strand, within MPMX20_01021at 1073.346 kb on + strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.483 kb on - strand, within MPMX20_01021at 1073.528 kb on + strand, within MPMX20_01021at 1073.655 kb on + strandat 1073.741 kb on + strandat 1073.746 kb on + strandat 1073.846 kb on + strandat 1073.856 kb on + strandat 1073.856 kb on + strandat 1073.875 kb on - strandat 1073.926 kb on + strandat 1073.926 kb on + strandat 1074.133 kb on - strand, within MPMX20_01022at 1074.133 kb on - strand, within MPMX20_01022at 1074.136 kb on + strand, within MPMX20_01022at 1074.139 kb on - strand, within MPMX20_01022at 1074.149 kb on - strand, within MPMX20_01022at 1074.157 kb on + strand, within MPMX20_01022at 1074.157 kb on + strand, within MPMX20_01022at 1074.165 kb on - strand, within MPMX20_01022at 1074.165 kb on - strand, within MPMX20_01022at 1074.176 kb on + strand, within MPMX20_01022at 1074.184 kb on - strand, within MPMX20_01022at 1074.251 kb on + strand, within MPMX20_01022at 1074.259 kb on - strand, within MPMX20_01022at 1074.266 kb on + strand, within MPMX20_01022at 1074.273 kb on + strand, within MPMX20_01022at 1074.286 kb on - strand, within MPMX20_01022at 1074.329 kb on - strand, within MPMX20_01022at 1074.329 kb on - strand, within MPMX20_01022at 1074.367 kb on - strand, within MPMX20_01022at 1074.434 kb on + strand, within MPMX20_01022at 1074.468 kb on + strand, within MPMX20_01022at 1074.494 kb on + strand, within MPMX20_01022at 1074.560 kb on + strand, within MPMX20_01022at 1074.568 kb on - strand, within MPMX20_01022at 1074.635 kb on - strand, within MPMX20_01022at 1074.647 kb on + strand, within MPMX20_01022

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,072,247 + MPMX20_01019 0.35 -1.2
1,072,303 - MPMX20_01019 0.41 +2.7
1,072,328 - MPMX20_01019 0.44 -1.1
1,072,352 - MPMX20_01019 0.46 -1.5
1,072,504 + MPMX20_01019 0.64 -2.5
1,072,523 + MPMX20_01019 0.66 -2.1
1,072,603 - MPMX20_01019 0.75 -1.6
1,072,694 + MPMX20_01019 0.85 +0.7
1,072,697 - MPMX20_01019 0.85 -0.1
1,072,697 - MPMX20_01019 0.85 -2.2
1,072,709 + MPMX20_01019 0.87 -1.3
1,072,735 + MPMX20_01019 0.90 -0.4
1,072,846 + -1.2
1,073,130 + MPMX20_01020 0.89 -1.4
1,073,130 + MPMX20_01020 0.89 -2.4
1,073,138 - -1.4
1,073,204 + +0.0
1,073,212 - +1.7
1,073,260 + MPMX20_01021 0.18 -1.9
1,073,278 - MPMX20_01021 0.22 -1.3
1,073,315 + MPMX20_01021 0.29 -0.6
1,073,346 + MPMX20_01021 0.35 -2.3
1,073,354 - MPMX20_01021 0.37 -0.4
1,073,354 - MPMX20_01021 0.37 +1.7
1,073,483 - MPMX20_01021 0.62 +0.7
1,073,528 + MPMX20_01021 0.70 -1.5
1,073,655 + -1.6
1,073,741 + -2.2
1,073,746 + -0.7
1,073,846 + -1.6
1,073,856 + -2.2
1,073,856 + -0.7
1,073,875 - +0.7
1,073,926 + -1.6
1,073,926 + -3.1
1,074,133 - MPMX20_01022 0.18 -2.6
1,074,133 - MPMX20_01022 0.18 -0.7
1,074,136 + MPMX20_01022 0.18 -2.0
1,074,139 - MPMX20_01022 0.19 -0.5
1,074,149 - MPMX20_01022 0.19 -0.5
1,074,157 + MPMX20_01022 0.19 +0.7
1,074,157 + MPMX20_01022 0.19 +0.2
1,074,165 - MPMX20_01022 0.20 -2.2
1,074,165 - MPMX20_01022 0.20 -0.5
1,074,176 + MPMX20_01022 0.20 -1.1
1,074,184 - MPMX20_01022 0.21 -2.0
1,074,251 + MPMX20_01022 0.24 +0.2
1,074,259 - MPMX20_01022 0.25 -2.3
1,074,266 + MPMX20_01022 0.25 -0.8
1,074,273 + MPMX20_01022 0.25 -2.0
1,074,286 - MPMX20_01022 0.26 -0.7
1,074,329 - MPMX20_01022 0.28 +0.3
1,074,329 - MPMX20_01022 0.28 -1.8
1,074,367 - MPMX20_01022 0.30 -2.2
1,074,434 + MPMX20_01022 0.33 -1.3
1,074,468 + MPMX20_01022 0.35 -0.6
1,074,494 + MPMX20_01022 0.36 +0.2
1,074,560 + MPMX20_01022 0.40 -2.6
1,074,568 - MPMX20_01022 0.40 +0.2
1,074,635 - MPMX20_01022 0.43 -1.1
1,074,647 + MPMX20_01022 0.44 -2.3

Or see this region's nucleotide sequence