Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01019

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01018 and MPMX20_01019 are separated by 149 nucleotidesMPMX20_01019 and MPMX20_01020 are separated by 11 nucleotidesMPMX20_01020 and MPMX20_01021 overlap by 1 nucleotidesMPMX20_01021 and MPMX20_01022 are separated by 88 nucleotides MPMX20_01018: MPMX20_01018 - Inner membrane transport protein YajR, at 1,070,429 to 1,071,790 _01018 MPMX20_01019: MPMX20_01019 - Protoheme IX farnesyltransferase, at 1,071,940 to 1,072,827 _01019 MPMX20_01020: MPMX20_01020 - Cytochrome bo(3) ubiquinol oxidase subunit 4, at 1,072,839 to 1,073,165 _01020 MPMX20_01021: MPMX20_01021 - Cytochrome bo(3) ubiquinol oxidase subunit 3, at 1,073,165 to 1,073,680 _01021 MPMX20_01022: MPMX20_01022 - Cytochrome bo(3) ubiquinol oxidase subunit 1, at 1,073,769 to 1,075,760 _01022 Position (kb) 1071 1072 1073Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1071.065 kb on - strand, within MPMX20_01018at 1071.182 kb on + strand, within MPMX20_01018at 1071.182 kb on + strand, within MPMX20_01018at 1071.190 kb on - strand, within MPMX20_01018at 1071.190 kb on - strand, within MPMX20_01018at 1071.238 kb on + strand, within MPMX20_01018at 1071.250 kb on + strand, within MPMX20_01018at 1071.250 kb on + strand, within MPMX20_01018at 1071.250 kb on + strand, within MPMX20_01018at 1071.258 kb on - strand, within MPMX20_01018at 1071.258 kb on - strand, within MPMX20_01018at 1071.258 kb on - strand, within MPMX20_01018at 1071.290 kb on - strand, within MPMX20_01018at 1071.315 kb on - strand, within MPMX20_01018at 1071.315 kb on - strand, within MPMX20_01018at 1071.415 kb on - strand, within MPMX20_01018at 1071.456 kb on - strand, within MPMX20_01018at 1071.456 kb on - strand, within MPMX20_01018at 1071.456 kb on - strand, within MPMX20_01018at 1071.492 kb on + strand, within MPMX20_01018at 1071.492 kb on + strand, within MPMX20_01018at 1071.492 kb on + strand, within MPMX20_01018at 1071.500 kb on - strand, within MPMX20_01018at 1071.556 kb on + strand, within MPMX20_01018at 1071.583 kb on + strand, within MPMX20_01018at 1071.583 kb on + strand, within MPMX20_01018at 1071.662 kb on + strandat 1071.670 kb on - strandat 1071.683 kb on + strandat 1071.683 kb on + strandat 1071.693 kb on + strandat 1071.751 kb on - strandat 1071.814 kb on + strandat 1071.827 kb on - strandat 1071.827 kb on - strandat 1071.831 kb on + strandat 1071.932 kb on + strandat 1071.932 kb on + strandat 1071.968 kb on - strandat 1071.968 kb on - strandat 1072.086 kb on + strand, within MPMX20_01019at 1072.086 kb on + strand, within MPMX20_01019at 1072.094 kb on - strand, within MPMX20_01019at 1072.109 kb on - strand, within MPMX20_01019at 1072.109 kb on - strand, within MPMX20_01019at 1072.247 kb on + strand, within MPMX20_01019at 1072.303 kb on - strand, within MPMX20_01019at 1072.328 kb on - strand, within MPMX20_01019at 1072.352 kb on - strand, within MPMX20_01019at 1072.504 kb on + strand, within MPMX20_01019at 1072.523 kb on + strand, within MPMX20_01019at 1072.603 kb on - strand, within MPMX20_01019at 1072.694 kb on + strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.697 kb on - strand, within MPMX20_01019at 1072.709 kb on + strand, within MPMX20_01019at 1072.735 kb on + strand, within MPMX20_01019at 1072.846 kb on + strandat 1073.130 kb on + strand, within MPMX20_01020at 1073.130 kb on + strand, within MPMX20_01020at 1073.138 kb on - strandat 1073.204 kb on + strandat 1073.212 kb on - strandat 1073.260 kb on + strand, within MPMX20_01021at 1073.278 kb on - strand, within MPMX20_01021at 1073.315 kb on + strand, within MPMX20_01021at 1073.346 kb on + strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.354 kb on - strand, within MPMX20_01021at 1073.483 kb on - strand, within MPMX20_01021at 1073.528 kb on + strand, within MPMX20_01021at 1073.655 kb on + strandat 1073.741 kb on + strandat 1073.746 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,071,065 - MPMX20_01018 0.47 -1.1
1,071,182 + MPMX20_01018 0.55 -0.9
1,071,182 + MPMX20_01018 0.55 -1.6
1,071,190 - MPMX20_01018 0.56 +0.4
1,071,190 - MPMX20_01018 0.56 +0.4
1,071,238 + MPMX20_01018 0.59 +2.7
1,071,250 + MPMX20_01018 0.60 -0.3
1,071,250 + MPMX20_01018 0.60 -0.1
1,071,250 + MPMX20_01018 0.60 -0.5
1,071,258 - MPMX20_01018 0.61 +1.4
1,071,258 - MPMX20_01018 0.61 +1.0
1,071,258 - MPMX20_01018 0.61 +0.7
1,071,290 - MPMX20_01018 0.63 +0.7
1,071,315 - MPMX20_01018 0.65 -1.1
1,071,315 - MPMX20_01018 0.65 -0.4
1,071,415 - MPMX20_01018 0.72 +0.5
1,071,456 - MPMX20_01018 0.75 -0.1
1,071,456 - MPMX20_01018 0.75 +0.4
1,071,456 - MPMX20_01018 0.75 -0.0
1,071,492 + MPMX20_01018 0.78 -0.2
1,071,492 + MPMX20_01018 0.78 -0.8
1,071,492 + MPMX20_01018 0.78 -3.1
1,071,500 - MPMX20_01018 0.79 +3.3
1,071,556 + MPMX20_01018 0.83 -2.4
1,071,583 + MPMX20_01018 0.85 -0.3
1,071,583 + MPMX20_01018 0.85 -0.9
1,071,662 + -0.6
1,071,670 - -2.9
1,071,683 + +1.2
1,071,683 + +0.2
1,071,693 + -1.9
1,071,751 - -0.1
1,071,814 + +0.2
1,071,827 - +0.6
1,071,827 - -0.7
1,071,831 + -0.1
1,071,932 + -0.7
1,071,932 + -1.1
1,071,968 - -0.1
1,071,968 - -0.1
1,072,086 + MPMX20_01019 0.16 +0.3
1,072,086 + MPMX20_01019 0.16 -0.8
1,072,094 - MPMX20_01019 0.17 +0.4
1,072,109 - MPMX20_01019 0.19 +0.3
1,072,109 - MPMX20_01019 0.19 -0.1
1,072,247 + MPMX20_01019 0.35 -1.2
1,072,303 - MPMX20_01019 0.41 +2.7
1,072,328 - MPMX20_01019 0.44 -1.1
1,072,352 - MPMX20_01019 0.46 -1.5
1,072,504 + MPMX20_01019 0.64 -2.5
1,072,523 + MPMX20_01019 0.66 -2.1
1,072,603 - MPMX20_01019 0.75 -1.6
1,072,694 + MPMX20_01019 0.85 +0.7
1,072,697 - MPMX20_01019 0.85 -0.1
1,072,697 - MPMX20_01019 0.85 -2.2
1,072,709 + MPMX20_01019 0.87 -1.3
1,072,735 + MPMX20_01019 0.90 -0.4
1,072,846 + -1.2
1,073,130 + MPMX20_01020 0.89 -1.4
1,073,130 + MPMX20_01020 0.89 -2.4
1,073,138 - -1.4
1,073,204 + +0.0
1,073,212 - +1.7
1,073,260 + MPMX20_01021 0.18 -1.9
1,073,278 - MPMX20_01021 0.22 -1.3
1,073,315 + MPMX20_01021 0.29 -0.6
1,073,346 + MPMX20_01021 0.35 -2.3
1,073,354 - MPMX20_01021 0.37 -0.4
1,073,354 - MPMX20_01021 0.37 +1.7
1,073,483 - MPMX20_01021 0.62 +0.7
1,073,528 + MPMX20_01021 0.70 -1.5
1,073,655 + -1.6
1,073,741 + -2.2
1,073,746 + -0.7

Or see this region's nucleotide sequence