Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01001

Experiment: TSB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01000 and MPMX20_01001 are separated by 142 nucleotidesMPMX20_01001 and MPMX20_01002 are separated by 14 nucleotidesMPMX20_01002 and MPMX20_01003 are separated by 48 nucleotides MPMX20_01000: MPMX20_01000 - Protein translocase subunit SecF, at 1,054,606 to 1,055,577 _01000 MPMX20_01001: MPMX20_01001 - hypothetical protein, at 1,055,720 to 1,056,085 _01001 MPMX20_01002: MPMX20_01002 - hypothetical protein, at 1,056,100 to 1,056,780 _01002 MPMX20_01003: MPMX20_01003 - Nucleoside-specific channel-forming protein Tsx, at 1,056,829 to 1,057,719 _01003 Position (kb) 1055 1056 1057Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1055.662 kb on + strandat 1055.677 kb on + strandat 1055.685 kb on - strandat 1055.800 kb on + strand, within MPMX20_01001at 1055.806 kb on + strand, within MPMX20_01001at 1055.807 kb on - strand, within MPMX20_01001at 1055.814 kb on - strand, within MPMX20_01001at 1055.903 kb on - strand, within MPMX20_01001at 1055.904 kb on + strand, within MPMX20_01001at 1055.914 kb on - strand, within MPMX20_01001at 1055.965 kb on + strand, within MPMX20_01001at 1056.040 kb on - strand, within MPMX20_01001at 1056.078 kb on - strandat 1056.078 kb on - strandat 1056.078 kb on - strandat 1056.097 kb on + strandat 1056.185 kb on + strand, within MPMX20_01002at 1056.185 kb on + strand, within MPMX20_01002at 1056.193 kb on - strand, within MPMX20_01002at 1056.357 kb on + strand, within MPMX20_01002at 1056.403 kb on + strand, within MPMX20_01002at 1056.416 kb on - strand, within MPMX20_01002at 1056.416 kb on - strand, within MPMX20_01002at 1056.428 kb on + strand, within MPMX20_01002at 1056.517 kb on - strand, within MPMX20_01002at 1056.517 kb on - strand, within MPMX20_01002at 1056.532 kb on + strand, within MPMX20_01002at 1056.566 kb on - strand, within MPMX20_01002at 1056.566 kb on - strand, within MPMX20_01002at 1056.626 kb on - strand, within MPMX20_01002at 1056.631 kb on - strand, within MPMX20_01002at 1056.650 kb on + strand, within MPMX20_01002at 1056.675 kb on - strand, within MPMX20_01002at 1056.909 kb on - strandat 1056.986 kb on + strand, within MPMX20_01003at 1056.990 kb on + strand, within MPMX20_01003at 1056.992 kb on - strand, within MPMX20_01003at 1057.068 kb on - strand, within MPMX20_01003at 1057.073 kb on - strand, within MPMX20_01003at 1057.073 kb on - strand, within MPMX20_01003

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,055,662 + -0.4
1,055,677 + -1.2
1,055,685 - +2.0
1,055,800 + MPMX20_01001 0.22 -1.3
1,055,806 + MPMX20_01001 0.23 +0.8
1,055,807 - MPMX20_01001 0.24 -1.3
1,055,814 - MPMX20_01001 0.26 -1.8
1,055,903 - MPMX20_01001 0.50 -2.1
1,055,904 + MPMX20_01001 0.50 -1.6
1,055,914 - MPMX20_01001 0.53 +1.0
1,055,965 + MPMX20_01001 0.67 +0.3
1,056,040 - MPMX20_01001 0.87 -0.6
1,056,078 - -0.8
1,056,078 - +2.8
1,056,078 - -0.2
1,056,097 + -0.5
1,056,185 + MPMX20_01002 0.12 -0.7
1,056,185 + MPMX20_01002 0.12 +0.2
1,056,193 - MPMX20_01002 0.14 +0.1
1,056,357 + MPMX20_01002 0.38 -0.2
1,056,403 + MPMX20_01002 0.44 -0.9
1,056,416 - MPMX20_01002 0.46 +0.2
1,056,416 - MPMX20_01002 0.46 +1.3
1,056,428 + MPMX20_01002 0.48 -1.3
1,056,517 - MPMX20_01002 0.61 -1.7
1,056,517 - MPMX20_01002 0.61 -0.7
1,056,532 + MPMX20_01002 0.63 -1.1
1,056,566 - MPMX20_01002 0.68 +0.3
1,056,566 - MPMX20_01002 0.68 +0.4
1,056,626 - MPMX20_01002 0.77 -0.0
1,056,631 - MPMX20_01002 0.78 -0.1
1,056,650 + MPMX20_01002 0.81 +0.4
1,056,675 - MPMX20_01002 0.84 +1.0
1,056,909 - -0.7
1,056,986 + MPMX20_01003 0.18 -1.9
1,056,990 + MPMX20_01003 0.18 -1.3
1,056,992 - MPMX20_01003 0.18 +1.8
1,057,068 - MPMX20_01003 0.27 -2.6
1,057,073 - MPMX20_01003 0.27 -0.5
1,057,073 - MPMX20_01003 0.27 -0.6

Or see this region's nucleotide sequence