Experiment: M9 plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04601 and MPMX20_04602 are separated by 341 nucleotides MPMX20_04602 and MPMX20_04603 are separated by 24 nucleotides MPMX20_04603 and MPMX20_04604 are separated by 27 nucleotides
MPMX20_04601: MPMX20_04601 - DNA polymerase I, at 4,817,141 to 4,819,933
_04601
MPMX20_04602: MPMX20_04602 - putative acyltransferase YihG, at 4,820,275 to 4,821,282
_04602
MPMX20_04603: MPMX20_04603 - Thiol:disulfide interchange protein DsbA, at 4,821,307 to 4,821,930
_04603
MPMX20_04604: MPMX20_04604 - Stress response kinase A, at 4,821,958 to 4,822,944
_04604
Position (kb)
4820
4821
4822 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 4819.975 kb on - strand at 4819.989 kb on + strand at 4820.108 kb on + strand at 4820.117 kb on - strand at 4820.210 kb on + strand at 4820.210 kb on + strand at 4820.210 kb on + strand at 4820.218 kb on - strand at 4820.218 kb on - strand at 4820.218 kb on - strand at 4820.218 kb on - strand at 4820.261 kb on - strand at 4820.284 kb on + strand at 4820.322 kb on + strand at 4820.356 kb on - strand at 4820.404 kb on + strand, within MPMX20_04602 at 4820.430 kb on + strand, within MPMX20_04602 at 4820.439 kb on + strand, within MPMX20_04602 at 4820.439 kb on + strand, within MPMX20_04602 at 4820.439 kb on + strand, within MPMX20_04602 at 4820.439 kb on + strand, within MPMX20_04602 at 4820.444 kb on + strand, within MPMX20_04602 at 4820.444 kb on + strand, within MPMX20_04602 at 4820.444 kb on + strand, within MPMX20_04602 at 4820.447 kb on - strand, within MPMX20_04602 at 4820.447 kb on - strand, within MPMX20_04602 at 4820.447 kb on - strand, within MPMX20_04602 at 4820.452 kb on - strand, within MPMX20_04602 at 4820.452 kb on - strand, within MPMX20_04602 at 4820.452 kb on - strand, within MPMX20_04602 at 4820.471 kb on + strand, within MPMX20_04602 at 4820.481 kb on + strand, within MPMX20_04602 at 4820.549 kb on - strand, within MPMX20_04602 at 4820.562 kb on - strand, within MPMX20_04602 at 4820.562 kb on - strand, within MPMX20_04602 at 4820.581 kb on - strand, within MPMX20_04602 at 4820.582 kb on - strand, within MPMX20_04602 at 4820.592 kb on - strand, within MPMX20_04602 at 4820.606 kb on + strand, within MPMX20_04602 at 4820.614 kb on - strand, within MPMX20_04602 at 4820.633 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.653 kb on + strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.661 kb on - strand, within MPMX20_04602 at 4820.663 kb on + strand, within MPMX20_04602 at 4820.670 kb on - strand, within MPMX20_04602 at 4820.707 kb on - strand, within MPMX20_04602 at 4820.748 kb on + strand, within MPMX20_04602 at 4820.957 kb on + strand, within MPMX20_04602 at 4820.965 kb on - strand, within MPMX20_04602 at 4820.979 kb on + strand, within MPMX20_04602 at 4820.979 kb on + strand, within MPMX20_04602 at 4820.987 kb on - strand, within MPMX20_04602 at 4820.987 kb on - strand, within MPMX20_04602 at 4820.987 kb on - strand, within MPMX20_04602 at 4820.987 kb on - strand, within MPMX20_04602 at 4821.004 kb on - strand, within MPMX20_04602 at 4821.013 kb on - strand, within MPMX20_04602 at 4821.044 kb on + strand, within MPMX20_04602 at 4821.054 kb on + strand, within MPMX20_04602 at 4821.093 kb on + strand, within MPMX20_04602 at 4821.093 kb on + strand, within MPMX20_04602 at 4821.101 kb on - strand, within MPMX20_04602 at 4821.116 kb on + strand, within MPMX20_04602 at 4821.126 kb on + strand, within MPMX20_04602 at 4821.126 kb on + strand, within MPMX20_04602 at 4821.135 kb on + strand, within MPMX20_04602 at 4821.936 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.941 kb on + strand at 4821.948 kb on - strand at 4821.949 kb on - strand at 4821.949 kb on - strand at 4821.977 kb on - strand at 4821.991 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.998 kb on + strand at 4821.999 kb on + strand at 4821.999 kb on - strand at 4822.003 kb on + strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.006 kb on - strand at 4822.008 kb on + strand at 4822.011 kb on + strand at 4822.019 kb on + strand at 4822.077 kb on + strand, within MPMX20_04604 at 4822.077 kb on + strand, within MPMX20_04604 at 4822.099 kb on + strand, within MPMX20_04604 at 4822.142 kb on + strand, within MPMX20_04604 at 4822.142 kb on + strand, within MPMX20_04604 at 4822.142 kb on + strand, within MPMX20_04604 at 4822.150 kb on - strand, within MPMX20_04604 at 4822.150 kb on - strand, within MPMX20_04604 at 4822.150 kb on - strand, within MPMX20_04604 at 4822.152 kb on + strand, within MPMX20_04604 at 4822.152 kb on + strand, within MPMX20_04604 at 4822.160 kb on - strand, within MPMX20_04604 at 4822.160 kb on - strand, within MPMX20_04604 at 4822.191 kb on - strand, within MPMX20_04604 at 4822.192 kb on + strand, within MPMX20_04604 at 4822.193 kb on - strand, within MPMX20_04604 at 4822.195 kb on - strand, within MPMX20_04604 at 4822.213 kb on - strand, within MPMX20_04604 at 4822.215 kb on + strand, within MPMX20_04604 at 4822.229 kb on + strand, within MPMX20_04604 at 4822.229 kb on + strand, within MPMX20_04604 at 4822.237 kb on - strand, within MPMX20_04604 at 4822.237 kb on - strand, within MPMX20_04604 at 4822.237 kb on - strand, within MPMX20_04604 at 4822.238 kb on + strand, within MPMX20_04604 at 4822.246 kb on - strand, within MPMX20_04604 at 4822.246 kb on - strand, within MPMX20_04604 at 4822.246 kb on - strand, within MPMX20_04604 at 4822.246 kb on - strand, within MPMX20_04604 at 4822.246 kb on - strand, within MPMX20_04604 at 4822.256 kb on - strand, within MPMX20_04604 at 4822.258 kb on + strand, within MPMX20_04604 at 4822.260 kb on - strand, within MPMX20_04604 at 4822.266 kb on - strand, within MPMX20_04604 at 4822.266 kb on - strand, within MPMX20_04604 at 4822.266 kb on - strand, within MPMX20_04604 at 4822.266 kb on - strand, within MPMX20_04604 at 4822.266 kb on - strand, within MPMX20_04604 at 4822.273 kb on + strand, within MPMX20_04604 at 4822.273 kb on + strand, within MPMX20_04604 at 4822.281 kb on - strand, within MPMX20_04604 at 4822.281 kb on - strand, within MPMX20_04604
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 4,819,975 - -0.8 4,819,989 + +1.0 4,820,108 + +4.1 4,820,117 - +0.2 4,820,210 + -0.5 4,820,210 + -0.3 4,820,210 + +3.6 4,820,218 - +0.7 4,820,218 - -0.3 4,820,218 - -0.7 4,820,218 - +0.0 4,820,261 - +0.4 4,820,284 + +0.6 4,820,322 + -2.3 4,820,356 - -1.9 4,820,404 + MPMX20_04602 0.13 -0.5 4,820,430 + MPMX20_04602 0.15 -1.7 4,820,439 + MPMX20_04602 0.16 +0.2 4,820,439 + MPMX20_04602 0.16 +0.1 4,820,439 + MPMX20_04602 0.16 +0.4 4,820,439 + MPMX20_04602 0.16 +1.0 4,820,444 + MPMX20_04602 0.17 -0.7 4,820,444 + MPMX20_04602 0.17 -0.6 4,820,444 + MPMX20_04602 0.17 +1.0 4,820,447 - MPMX20_04602 0.17 -0.7 4,820,447 - MPMX20_04602 0.17 -0.3 4,820,447 - MPMX20_04602 0.17 +0.2 4,820,452 - MPMX20_04602 0.18 +0.2 4,820,452 - MPMX20_04602 0.18 +0.1 4,820,452 - MPMX20_04602 0.18 +2.6 4,820,471 + MPMX20_04602 0.19 +1.6 4,820,481 + MPMX20_04602 0.20 +1.1 4,820,549 - MPMX20_04602 0.27 +0.9 4,820,562 - MPMX20_04602 0.28 -0.2 4,820,562 - MPMX20_04602 0.28 -0.2 4,820,581 - MPMX20_04602 0.30 +0.0 4,820,582 - MPMX20_04602 0.30 -0.1 4,820,592 - MPMX20_04602 0.31 -0.9 4,820,606 + MPMX20_04602 0.33 +0.3 4,820,614 - MPMX20_04602 0.34 +2.0 4,820,633 + MPMX20_04602 0.36 +2.0 4,820,653 + MPMX20_04602 0.38 +1.0 4,820,653 + MPMX20_04602 0.38 -0.3 4,820,653 + MPMX20_04602 0.38 +7.8 4,820,653 + MPMX20_04602 0.38 +0.6 4,820,653 + MPMX20_04602 0.38 +0.7 4,820,653 + MPMX20_04602 0.38 -0.4 4,820,653 + MPMX20_04602 0.38 -0.8 4,820,653 + MPMX20_04602 0.38 -0.1 4,820,661 - MPMX20_04602 0.38 +1.0 4,820,661 - MPMX20_04602 0.38 +2.0 4,820,661 - MPMX20_04602 0.38 -0.3 4,820,661 - MPMX20_04602 0.38 -0.4 4,820,661 - MPMX20_04602 0.38 -2.6 4,820,661 - MPMX20_04602 0.38 -0.3 4,820,663 + MPMX20_04602 0.38 -0.2 4,820,670 - MPMX20_04602 0.39 +0.2 4,820,707 - MPMX20_04602 0.43 -0.7 4,820,748 + MPMX20_04602 0.47 +0.8 4,820,957 + MPMX20_04602 0.68 -0.6 4,820,965 - MPMX20_04602 0.68 +1.8 4,820,979 + MPMX20_04602 0.70 +0.5 4,820,979 + MPMX20_04602 0.70 -0.7 4,820,987 - MPMX20_04602 0.71 -0.3 4,820,987 - MPMX20_04602 0.71 -0.6 4,820,987 - MPMX20_04602 0.71 -0.1 4,820,987 - MPMX20_04602 0.71 -0.5 4,821,004 - MPMX20_04602 0.72 -0.9 4,821,013 - MPMX20_04602 0.73 -0.6 4,821,044 + MPMX20_04602 0.76 -0.5 4,821,054 + MPMX20_04602 0.77 +0.0 4,821,093 + MPMX20_04602 0.81 +1.0 4,821,093 + MPMX20_04602 0.81 -0.7 4,821,101 - MPMX20_04602 0.82 -0.6 4,821,116 + MPMX20_04602 0.83 +1.2 4,821,126 + MPMX20_04602 0.84 +0.0 4,821,126 + MPMX20_04602 0.84 -0.3 4,821,135 + MPMX20_04602 0.85 -0.0 4,821,936 + +0.2 4,821,941 + -1.6 4,821,941 + -2.4 4,821,941 + -1.6 4,821,941 + +0.9 4,821,941 + +2.0 4,821,941 + +1.4 4,821,941 + -1.3 4,821,941 + +2.0 4,821,948 - +1.4 4,821,949 - -0.1 4,821,949 - +0.0 4,821,977 - -0.6 4,821,991 + -0.7 4,821,998 + -0.1 4,821,998 + -0.5 4,821,998 + -1.2 4,821,998 + -1.3 4,821,998 + -0.5 4,821,998 + +0.7 4,821,998 + +0.1 4,821,998 + +1.0 4,821,998 + +0.9 4,821,998 + +0.6 4,821,998 + +1.4 4,821,998 + +0.7 4,821,998 + -0.8 4,821,998 + -0.3 4,821,998 + +0.2 4,821,998 + -0.4 4,821,998 + -0.5 4,821,998 + +0.0 4,821,998 + -1.8 4,821,998 + -1.0 4,821,998 + -0.5 4,821,998 + +0.7 4,821,998 + +0.4 4,821,998 + +0.4 4,821,998 + -2.1 4,821,999 + +0.6 4,821,999 - +2.0 4,822,003 + -0.1 4,822,006 - +0.6 4,822,006 - +6.4 4,822,006 - -0.9 4,822,006 - -1.4 4,822,006 - -1.4 4,822,006 - -0.6 4,822,006 - -0.1 4,822,006 - -0.1 4,822,006 - -0.7 4,822,006 - -1.1 4,822,006 - +1.0 4,822,006 - +0.6 4,822,006 - -2.1 4,822,006 - +1.7 4,822,006 - +0.7 4,822,006 - -0.5 4,822,006 - +4.1 4,822,006 - +0.9 4,822,006 - +1.2 4,822,006 - -0.9 4,822,006 - -0.7 4,822,006 - -0.0 4,822,006 - +0.1 4,822,006 - +0.5 4,822,006 - -0.4 4,822,006 - +1.2 4,822,006 - +0.8 4,822,006 - -0.4 4,822,006 - -0.8 4,822,006 - +0.4 4,822,006 - -0.7 4,822,006 - +0.5 4,822,006 - +2.4 4,822,006 - +0.3 4,822,006 - -1.1 4,822,006 - +0.6 4,822,006 - +0.3 4,822,008 + +0.4 4,822,011 + +0.0 4,822,019 + -0.1 4,822,077 + MPMX20_04604 0.12 +2.0 4,822,077 + MPMX20_04604 0.12 -1.8 4,822,099 + MPMX20_04604 0.14 +0.4 4,822,142 + MPMX20_04604 0.19 +0.2 4,822,142 + MPMX20_04604 0.19 +2.0 4,822,142 + MPMX20_04604 0.19 +0.1 4,822,150 - MPMX20_04604 0.19 +0.3 4,822,150 - MPMX20_04604 0.19 +0.0 4,822,150 - MPMX20_04604 0.19 +2.0 4,822,152 + MPMX20_04604 0.20 -0.9 4,822,152 + MPMX20_04604 0.20 +0.5 4,822,160 - MPMX20_04604 0.20 -0.3 4,822,160 - MPMX20_04604 0.20 -1.3 4,822,191 - MPMX20_04604 0.24 -0.2 4,822,192 + MPMX20_04604 0.24 -0.7 4,822,193 - MPMX20_04604 0.24 -0.3 4,822,195 - MPMX20_04604 0.24 -0.6 4,822,213 - MPMX20_04604 0.26 -1.0 4,822,215 + MPMX20_04604 0.26 +0.4 4,822,229 + MPMX20_04604 0.27 +1.8 4,822,229 + MPMX20_04604 0.27 -0.3 4,822,237 - MPMX20_04604 0.28 -1.0 4,822,237 - MPMX20_04604 0.28 -0.2 4,822,237 - MPMX20_04604 0.28 +0.4 4,822,238 + MPMX20_04604 0.28 -0.7 4,822,246 - MPMX20_04604 0.29 +3.0 4,822,246 - MPMX20_04604 0.29 +2.6 4,822,246 - MPMX20_04604 0.29 -1.3 4,822,246 - MPMX20_04604 0.29 +0.4 4,822,246 - MPMX20_04604 0.29 -0.8 4,822,256 - MPMX20_04604 0.30 +1.7 4,822,258 + MPMX20_04604 0.30 -1.3 4,822,260 - MPMX20_04604 0.31 +2.6 4,822,266 - MPMX20_04604 0.31 -0.4 4,822,266 - MPMX20_04604 0.31 +1.3 4,822,266 - MPMX20_04604 0.31 +1.4 4,822,266 - MPMX20_04604 0.31 +1.4 4,822,266 - MPMX20_04604 0.31 +0.3 4,822,273 + MPMX20_04604 0.32 +1.0 4,822,273 + MPMX20_04604 0.32 -0.0 4,822,281 - MPMX20_04604 0.33 +3.0 4,822,281 - MPMX20_04604 0.33 -1.6
Or see this region's nucleotide sequence