Experiment: M9 plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03046 and MPMX20_03047 are separated by 22 nucleotides MPMX20_03047 and MPMX20_03048 are separated by 91 nucleotides MPMX20_03048 and MPMX20_03049 are separated by 343 nucleotides
MPMX20_03046: MPMX20_03046 - hypothetical protein, at 3,185,430 to 3,187,280
_03046
MPMX20_03047: MPMX20_03047 - dCTP deaminase, at 3,187,303 to 3,187,884
_03047
MPMX20_03048: MPMX20_03048 - Uridine kinase, at 3,187,976 to 3,188,617
_03048
MPMX20_03049: MPMX20_03049 - putative diguanylate cyclase DgcE, at 3,188,961 to 3,192,290
_03049
Position (kb)
3187
3188
3189 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 3186.977 kb on - strand, within MPMX20_03046 at 3186.979 kb on + strand, within MPMX20_03046 at 3186.987 kb on - strand, within MPMX20_03046 at 3186.987 kb on - strand, within MPMX20_03046 at 3186.989 kb on + strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.044 kb on - strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.049 kb on + strand, within MPMX20_03046 at 3187.201 kb on - strand at 3187.215 kb on - strand at 3187.336 kb on - strand at 3187.393 kb on + strand, within MPMX20_03047 at 3187.401 kb on + strand, within MPMX20_03047 at 3187.409 kb on - strand, within MPMX20_03047 at 3187.409 kb on - strand, within MPMX20_03047 at 3187.413 kb on - strand, within MPMX20_03047 at 3187.460 kb on - strand, within MPMX20_03047 at 3187.485 kb on + strand, within MPMX20_03047 at 3187.493 kb on - strand, within MPMX20_03047 at 3187.495 kb on + strand, within MPMX20_03047 at 3187.495 kb on + strand, within MPMX20_03047 at 3187.503 kb on - strand, within MPMX20_03047 at 3187.573 kb on + strand, within MPMX20_03047 at 3187.638 kb on + strand, within MPMX20_03047 at 3187.782 kb on + strand, within MPMX20_03047 at 3187.790 kb on - strand, within MPMX20_03047 at 3187.796 kb on + strand, within MPMX20_03047 at 3187.796 kb on + strand, within MPMX20_03047 at 3187.814 kb on + strand, within MPMX20_03047 at 3187.815 kb on - strand, within MPMX20_03047 at 3187.815 kb on - strand, within MPMX20_03047 at 3187.834 kb on - strand at 3187.834 kb on - strand at 3187.855 kb on + strand at 3187.863 kb on - strand at 3187.912 kb on + strand at 3187.913 kb on - strand at 3187.913 kb on - strand at 3187.918 kb on + strand at 3187.942 kb on + strand at 3187.947 kb on + strand at 3187.948 kb on + strand at 3187.955 kb on + strand at 3187.956 kb on - strand at 3188.027 kb on + strand at 3188.059 kb on - strand, within MPMX20_03048 at 3188.066 kb on - strand, within MPMX20_03048 at 3188.114 kb on - strand, within MPMX20_03048 at 3188.160 kb on - strand, within MPMX20_03048 at 3188.189 kb on + strand, within MPMX20_03048 at 3188.227 kb on - strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.236 kb on + strand, within MPMX20_03048 at 3188.244 kb on - strand, within MPMX20_03048 at 3188.244 kb on - strand, within MPMX20_03048 at 3188.315 kb on + strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.323 kb on - strand, within MPMX20_03048 at 3188.328 kb on - strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.393 kb on + strand, within MPMX20_03048 at 3188.401 kb on - strand, within MPMX20_03048 at 3188.416 kb on + strand, within MPMX20_03048 at 3188.456 kb on + strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.464 kb on - strand, within MPMX20_03048 at 3188.479 kb on + strand, within MPMX20_03048 at 3188.501 kb on - strand, within MPMX20_03048 at 3188.513 kb on - strand, within MPMX20_03048 at 3188.522 kb on - strand, within MPMX20_03048 at 3188.524 kb on + strand, within MPMX20_03048 at 3188.524 kb on + strand, within MPMX20_03048 at 3188.524 kb on - strand, within MPMX20_03048 at 3188.545 kb on + strand, within MPMX20_03048 at 3188.599 kb on + strand at 3188.607 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.662 kb on - strand at 3188.667 kb on - strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.701 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.727 kb on + strand at 3188.731 kb on - strand at 3188.735 kb on - strand at 3188.737 kb on + strand at 3188.913 kb on + strand at 3188.929 kb on - strand at 3188.943 kb on + strand at 3188.948 kb on + strand at 3188.951 kb on - strand at 3188.951 kb on - strand at 3188.995 kb on + strand at 3188.995 kb on + strand at 3188.995 kb on + strand at 3189.003 kb on - strand at 3189.003 kb on - strand at 3189.022 kb on + strand at 3189.022 kb on + strand at 3189.030 kb on - strand at 3189.030 kb on - strand at 3189.035 kb on - strand at 3189.035 kb on - strand at 3189.035 kb on - strand at 3189.037 kb on + strand at 3189.037 kb on + strand at 3189.037 kb on + strand at 3189.037 kb on + strand at 3189.044 kb on - strand at 3189.044 kb on - strand at 3189.045 kb on - strand at 3189.063 kb on + strand at 3189.071 kb on - strand at 3189.071 kb on - strand at 3189.152 kb on - strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.165 kb on + strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.173 kb on - strand at 3189.276 kb on + strand at 3189.284 kb on - strand at 3189.284 kb on - strand at 3189.302 kb on + strand, within MPMX20_03049 at 3189.302 kb on + strand, within MPMX20_03049 at 3189.302 kb on + strand, within MPMX20_03049 at 3189.302 kb on + strand, within MPMX20_03049 at 3189.310 kb on - strand, within MPMX20_03049 at 3189.310 kb on - strand, within MPMX20_03049 at 3189.327 kb on + strand, within MPMX20_03049 at 3189.384 kb on - strand, within MPMX20_03049 at 3189.389 kb on - strand, within MPMX20_03049 at 3189.394 kb on - strand, within MPMX20_03049 at 3189.470 kb on + strand, within MPMX20_03049 at 3189.474 kb on + strand, within MPMX20_03049 at 3189.482 kb on - strand, within MPMX20_03049
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 3,186,977 - MPMX20_03046 0.84 +0.4 3,186,979 + MPMX20_03046 0.84 -1.1 3,186,987 - MPMX20_03046 0.84 -1.1 3,186,987 - MPMX20_03046 0.84 -0.7 3,186,989 + MPMX20_03046 0.84 -0.1 3,187,044 - MPMX20_03046 0.87 +0.4 3,187,044 - MPMX20_03046 0.87 -0.8 3,187,044 - MPMX20_03046 0.87 +3.5 3,187,049 + MPMX20_03046 0.87 -0.8 3,187,049 + MPMX20_03046 0.87 -1.1 3,187,049 + MPMX20_03046 0.87 -0.6 3,187,201 - +0.7 3,187,215 - -0.3 3,187,336 - -1.8 3,187,393 + MPMX20_03047 0.15 -1.4 3,187,401 + MPMX20_03047 0.17 +0.4 3,187,409 - MPMX20_03047 0.18 +0.6 3,187,409 - MPMX20_03047 0.18 -1.5 3,187,413 - MPMX20_03047 0.19 -1.1 3,187,460 - MPMX20_03047 0.27 -1.9 3,187,485 + MPMX20_03047 0.31 -0.2 3,187,493 - MPMX20_03047 0.33 +0.8 3,187,495 + MPMX20_03047 0.33 -1.5 3,187,495 + MPMX20_03047 0.33 -1.8 3,187,503 - MPMX20_03047 0.34 -1.2 3,187,573 + MPMX20_03047 0.46 -2.1 3,187,638 + MPMX20_03047 0.58 -1.6 3,187,782 + MPMX20_03047 0.82 -1.5 3,187,790 - MPMX20_03047 0.84 -1.2 3,187,796 + MPMX20_03047 0.85 +1.4 3,187,796 + MPMX20_03047 0.85 -0.9 3,187,814 + MPMX20_03047 0.88 -0.6 3,187,815 - MPMX20_03047 0.88 -1.2 3,187,815 - MPMX20_03047 0.88 +0.8 3,187,834 - +1.8 3,187,834 - +0.1 3,187,855 + +0.4 3,187,863 - -1.1 3,187,912 + -1.7 3,187,913 - -0.1 3,187,913 - -1.4 3,187,918 + -1.4 3,187,942 + -0.6 3,187,947 + -2.4 3,187,948 + -1.2 3,187,955 + +0.1 3,187,956 - -1.7 3,188,027 + +0.2 3,188,059 - MPMX20_03048 0.13 +0.4 3,188,066 - MPMX20_03048 0.14 -0.5 3,188,114 - MPMX20_03048 0.21 +1.4 3,188,160 - MPMX20_03048 0.29 -1.5 3,188,189 + MPMX20_03048 0.33 -1.6 3,188,227 - MPMX20_03048 0.39 +1.1 3,188,236 + MPMX20_03048 0.40 -2.3 3,188,236 + MPMX20_03048 0.40 -0.4 3,188,236 + MPMX20_03048 0.40 -0.7 3,188,236 + MPMX20_03048 0.40 -0.8 3,188,244 - MPMX20_03048 0.42 +0.4 3,188,244 - MPMX20_03048 0.42 -1.1 3,188,315 + MPMX20_03048 0.53 -0.8 3,188,323 - MPMX20_03048 0.54 -0.0 3,188,323 - MPMX20_03048 0.54 -0.6 3,188,323 - MPMX20_03048 0.54 -1.6 3,188,323 - MPMX20_03048 0.54 +0.1 3,188,328 - MPMX20_03048 0.55 -0.4 3,188,393 + MPMX20_03048 0.65 -1.9 3,188,393 + MPMX20_03048 0.65 -2.0 3,188,393 + MPMX20_03048 0.65 -1.4 3,188,393 + MPMX20_03048 0.65 -0.9 3,188,393 + MPMX20_03048 0.65 +1.4 3,188,393 + MPMX20_03048 0.65 +0.1 3,188,401 - MPMX20_03048 0.66 -1.0 3,188,416 + MPMX20_03048 0.69 -0.4 3,188,456 + MPMX20_03048 0.75 +0.1 3,188,464 - MPMX20_03048 0.76 -1.2 3,188,464 - MPMX20_03048 0.76 -2.2 3,188,464 - MPMX20_03048 0.76 -0.6 3,188,479 + MPMX20_03048 0.78 -1.5 3,188,501 - MPMX20_03048 0.82 -0.9 3,188,513 - MPMX20_03048 0.84 -1.3 3,188,522 - MPMX20_03048 0.85 -0.3 3,188,524 + MPMX20_03048 0.85 +1.2 3,188,524 + MPMX20_03048 0.85 +0.5 3,188,524 - MPMX20_03048 0.85 -0.7 3,188,545 + MPMX20_03048 0.89 -0.8 3,188,599 + -0.6 3,188,607 - -0.3 3,188,662 - -2.6 3,188,662 - -1.0 3,188,662 - -0.9 3,188,662 - -0.5 3,188,667 - +0.9 3,188,701 + +0.8 3,188,701 + -1.9 3,188,701 + -0.9 3,188,701 + +0.4 3,188,701 + +0.1 3,188,727 + +5.9 3,188,727 + +0.1 3,188,727 + +0.3 3,188,727 + -1.1 3,188,727 + -1.2 3,188,731 - -0.3 3,188,735 - -0.7 3,188,737 + -1.3 3,188,913 + -0.7 3,188,929 - -0.2 3,188,943 + -0.4 3,188,948 + -1.2 3,188,951 - -0.2 3,188,951 - +0.8 3,188,995 + +0.3 3,188,995 + -0.5 3,188,995 + +1.2 3,189,003 - +1.6 3,189,003 - -0.5 3,189,022 + +0.3 3,189,022 + -0.9 3,189,030 - +0.7 3,189,030 - -3.0 3,189,035 - -0.4 3,189,035 - +2.4 3,189,035 - -0.1 3,189,037 + +0.3 3,189,037 + +1.2 3,189,037 + +0.6 3,189,037 + +0.9 3,189,044 - +0.7 3,189,044 - -0.1 3,189,045 - -0.7 3,189,063 + +0.5 3,189,071 - -0.2 3,189,071 - +0.6 3,189,152 - -1.3 3,189,165 + -1.7 3,189,165 + -0.4 3,189,165 + +0.6 3,189,165 + +0.7 3,189,165 + -0.8 3,189,165 + +1.4 3,189,165 + -1.6 3,189,173 - -1.3 3,189,173 - -0.4 3,189,173 - +1.4 3,189,173 - +1.6 3,189,173 - -1.2 3,189,173 - +0.4 3,189,173 - -0.6 3,189,276 + -0.3 3,189,284 - -0.2 3,189,284 - +0.1 3,189,302 + MPMX20_03049 0.10 -0.7 3,189,302 + MPMX20_03049 0.10 -1.5 3,189,302 + MPMX20_03049 0.10 -1.1 3,189,302 + MPMX20_03049 0.10 -1.7 3,189,310 - MPMX20_03049 0.10 -1.9 3,189,310 - MPMX20_03049 0.10 +4.2 3,189,327 + MPMX20_03049 0.11 -0.5 3,189,384 - MPMX20_03049 0.13 -1.2 3,189,389 - MPMX20_03049 0.13 +0.8 3,189,394 - MPMX20_03049 0.13 +2.0 3,189,470 + MPMX20_03049 0.15 +0.3 3,189,474 + MPMX20_03049 0.15 +1.0 3,189,482 - MPMX20_03049 0.16 -0.8
Or see this region's nucleotide sequence