Experiment: M9 plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02160 and MPMX20_02161 overlap by 4 nucleotides MPMX20_02161 and MPMX20_02162 are separated by 74 nucleotides MPMX20_02162 and MPMX20_02163 are separated by 273 nucleotides
MPMX20_02160: MPMX20_02160 - Nickel and cobalt resistance protein CnrA, at 2,252,060 to 2,255,119
_02160
MPMX20_02161: MPMX20_02161 - Multidrug resistance protein MdtA, at 2,255,116 to 2,256,225
_02161
MPMX20_02162: MPMX20_02162 - hypothetical protein, at 2,256,300 to 2,256,914
_02162
MPMX20_02163: MPMX20_02163 - putative oxidoreductase, at 2,257,188 to 2,258,006
_02163
Position (kb)
2255
2256
2257 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2254.179 kb on + strand, within MPMX20_02160 at 2254.200 kb on - strand, within MPMX20_02160 at 2254.209 kb on + strand, within MPMX20_02160 at 2254.209 kb on + strand, within MPMX20_02160 at 2254.219 kb on + strand, within MPMX20_02160 at 2254.229 kb on + strand, within MPMX20_02160 at 2254.251 kb on + strand, within MPMX20_02160 at 2254.254 kb on - strand, within MPMX20_02160 at 2254.254 kb on - strand, within MPMX20_02160 at 2254.272 kb on - strand, within MPMX20_02160 at 2254.287 kb on - strand, within MPMX20_02160 at 2254.287 kb on - strand, within MPMX20_02160 at 2254.308 kb on + strand, within MPMX20_02160 at 2254.350 kb on + strand, within MPMX20_02160 at 2254.350 kb on + strand, within MPMX20_02160 at 2254.358 kb on - strand, within MPMX20_02160 at 2254.358 kb on - strand, within MPMX20_02160 at 2254.486 kb on - strand, within MPMX20_02160 at 2254.518 kb on - strand, within MPMX20_02160 at 2254.681 kb on + strand, within MPMX20_02160 at 2254.681 kb on + strand, within MPMX20_02160 at 2254.784 kb on - strand, within MPMX20_02160 at 2254.856 kb on + strand at 2254.980 kb on + strand at 2255.055 kb on - strand at 2255.096 kb on - strand at 2255.218 kb on + strand at 2255.218 kb on + strand at 2255.268 kb on + strand, within MPMX20_02161 at 2255.326 kb on + strand, within MPMX20_02161 at 2255.339 kb on + strand, within MPMX20_02161 at 2255.358 kb on - strand, within MPMX20_02161 at 2255.367 kb on + strand, within MPMX20_02161 at 2255.377 kb on - strand, within MPMX20_02161 at 2255.394 kb on - strand, within MPMX20_02161 at 2255.406 kb on - strand, within MPMX20_02161 at 2255.461 kb on - strand, within MPMX20_02161 at 2255.570 kb on + strand, within MPMX20_02161 at 2255.608 kb on + strand, within MPMX20_02161 at 2255.616 kb on - strand, within MPMX20_02161 at 2255.621 kb on - strand, within MPMX20_02161 at 2255.661 kb on + strand, within MPMX20_02161 at 2255.661 kb on + strand, within MPMX20_02161 at 2255.669 kb on - strand, within MPMX20_02161 at 2255.669 kb on - strand, within MPMX20_02161 at 2255.717 kb on + strand, within MPMX20_02161 at 2255.749 kb on - strand, within MPMX20_02161 at 2255.762 kb on + strand, within MPMX20_02161 at 2255.770 kb on - strand, within MPMX20_02161 at 2255.795 kb on + strand, within MPMX20_02161 at 2255.795 kb on + strand, within MPMX20_02161 at 2255.882 kb on - strand, within MPMX20_02161 at 2255.887 kb on + strand, within MPMX20_02161 at 2255.887 kb on + strand, within MPMX20_02161 at 2255.924 kb on - strand, within MPMX20_02161 at 2255.963 kb on + strand, within MPMX20_02161 at 2255.964 kb on - strand, within MPMX20_02161 at 2255.965 kb on - strand, within MPMX20_02161 at 2255.981 kb on - strand, within MPMX20_02161 at 2256.120 kb on - strand at 2256.151 kb on - strand at 2256.210 kb on + strand at 2256.217 kb on - strand at 2256.220 kb on + strand at 2256.224 kb on + strand at 2256.393 kb on - strand, within MPMX20_02162 at 2256.393 kb on - strand, within MPMX20_02162 at 2256.422 kb on + strand, within MPMX20_02162 at 2256.422 kb on + strand, within MPMX20_02162 at 2256.435 kb on - strand, within MPMX20_02162 at 2256.753 kb on + strand, within MPMX20_02162 at 2256.839 kb on - strand, within MPMX20_02162 at 2256.839 kb on - strand, within MPMX20_02162 at 2256.878 kb on + strand at 2256.878 kb on + strand at 2256.897 kb on - strand at 2256.992 kb on + strand at 2257.036 kb on + strand at 2257.044 kb on - strand at 2257.044 kb on - strand at 2257.044 kb on - strand at 2257.112 kb on - strand at 2257.170 kb on + strand at 2257.170 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 2,254,179 + MPMX20_02160 0.69 -0.9 2,254,200 - MPMX20_02160 0.70 +1.8 2,254,209 + MPMX20_02160 0.70 +0.8 2,254,209 + MPMX20_02160 0.70 -0.2 2,254,219 + MPMX20_02160 0.71 +1.0 2,254,229 + MPMX20_02160 0.71 -1.2 2,254,251 + MPMX20_02160 0.72 -0.3 2,254,254 - MPMX20_02160 0.72 +2.4 2,254,254 - MPMX20_02160 0.72 -1.6 2,254,272 - MPMX20_02160 0.72 +0.3 2,254,287 - MPMX20_02160 0.73 -2.3 2,254,287 - MPMX20_02160 0.73 +0.1 2,254,308 + MPMX20_02160 0.73 +0.5 2,254,350 + MPMX20_02160 0.75 -1.8 2,254,350 + MPMX20_02160 0.75 -1.5 2,254,358 - MPMX20_02160 0.75 +0.5 2,254,358 - MPMX20_02160 0.75 +2.2 2,254,486 - MPMX20_02160 0.79 +0.1 2,254,518 - MPMX20_02160 0.80 +0.4 2,254,681 + MPMX20_02160 0.86 -0.5 2,254,681 + MPMX20_02160 0.86 +0.2 2,254,784 - MPMX20_02160 0.89 -0.1 2,254,856 + -1.6 2,254,980 + +0.1 2,255,055 - -0.2 2,255,096 - +3.8 2,255,218 + +1.1 2,255,218 + +0.1 2,255,268 + MPMX20_02161 0.14 -0.3 2,255,326 + MPMX20_02161 0.19 +0.0 2,255,339 + MPMX20_02161 0.20 -1.1 2,255,358 - MPMX20_02161 0.22 +0.4 2,255,367 + MPMX20_02161 0.23 +0.7 2,255,377 - MPMX20_02161 0.24 -1.0 2,255,394 - MPMX20_02161 0.25 +0.2 2,255,406 - MPMX20_02161 0.26 -2.1 2,255,461 - MPMX20_02161 0.31 +1.8 2,255,570 + MPMX20_02161 0.41 -0.5 2,255,608 + MPMX20_02161 0.44 +1.4 2,255,616 - MPMX20_02161 0.45 -0.8 2,255,621 - MPMX20_02161 0.45 -0.6 2,255,661 + MPMX20_02161 0.49 -1.2 2,255,661 + MPMX20_02161 0.49 +1.2 2,255,669 - MPMX20_02161 0.50 -0.6 2,255,669 - MPMX20_02161 0.50 +0.6 2,255,717 + MPMX20_02161 0.54 -1.5 2,255,749 - MPMX20_02161 0.57 -0.5 2,255,762 + MPMX20_02161 0.58 +0.2 2,255,770 - MPMX20_02161 0.59 -2.8 2,255,795 + MPMX20_02161 0.61 +0.6 2,255,795 + MPMX20_02161 0.61 -0.7 2,255,882 - MPMX20_02161 0.69 -1.2 2,255,887 + MPMX20_02161 0.69 -1.5 2,255,887 + MPMX20_02161 0.69 -0.2 2,255,924 - MPMX20_02161 0.73 -0.1 2,255,963 + MPMX20_02161 0.76 -0.7 2,255,964 - MPMX20_02161 0.76 -0.8 2,255,965 - MPMX20_02161 0.76 -1.3 2,255,981 - MPMX20_02161 0.78 -0.1 2,256,120 - +0.6 2,256,151 - +0.4 2,256,210 + -0.4 2,256,217 - +0.1 2,256,220 + -0.3 2,256,224 + -0.8 2,256,393 - MPMX20_02162 0.15 +0.3 2,256,393 - MPMX20_02162 0.15 -1.1 2,256,422 + MPMX20_02162 0.20 +1.1 2,256,422 + MPMX20_02162 0.20 -0.3 2,256,435 - MPMX20_02162 0.22 -1.2 2,256,753 + MPMX20_02162 0.74 -0.5 2,256,839 - MPMX20_02162 0.88 -0.1 2,256,839 - MPMX20_02162 0.88 +0.1 2,256,878 + +0.4 2,256,878 + -1.5 2,256,897 - -1.3 2,256,992 + -0.6 2,257,036 + -0.6 2,257,044 - +1.3 2,257,044 - +0.1 2,257,044 - -2.1 2,257,112 - +0.9 2,257,170 + +0.0 2,257,170 + -1.2
Or see this region's nucleotide sequence