Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01010

Experiment: M9 plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01009 and MPMX20_01010 are separated by 81 nucleotidesMPMX20_01010 and MPMX20_01011 are separated by 63 nucleotides MPMX20_01009: MPMX20_01009 - Thiamine-monophosphate kinase, at 1,061,307 to 1,062,278 _01009 MPMX20_01010: MPMX20_01010 - 1-deoxyxylulose-5-phosphate synthase YajO, at 1,062,360 to 1,063,334 _01010 MPMX20_01011: MPMX20_01011 - 1-deoxy-D-xylulose-5-phosphate synthase, at 1,063,398 to 1,065,260 _01011 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -2 -1 0 1 2at 1062.297 kb on - strandat 1062.307 kb on - strandat 1062.323 kb on - strandat 1062.350 kb on + strandat 1062.362 kb on + strandat 1062.370 kb on - strandat 1062.375 kb on - strandat 1062.429 kb on + strandat 1062.672 kb on - strand, within MPMX20_01010at 1062.672 kb on - strand, within MPMX20_01010at 1062.675 kb on + strand, within MPMX20_01010at 1062.690 kb on + strand, within MPMX20_01010at 1062.702 kb on + strand, within MPMX20_01010at 1062.721 kb on - strand, within MPMX20_01010at 1062.772 kb on + strand, within MPMX20_01010at 1062.886 kb on + strand, within MPMX20_01010at 1062.892 kb on + strand, within MPMX20_01010at 1062.900 kb on - strand, within MPMX20_01010at 1062.939 kb on + strand, within MPMX20_01010at 1062.981 kb on - strand, within MPMX20_01010at 1063.002 kb on + strand, within MPMX20_01010at 1063.115 kb on + strand, within MPMX20_01010at 1063.150 kb on + strand, within MPMX20_01010at 1063.232 kb on - strand, within MPMX20_01010at 1063.262 kb on + strandat 1063.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus megaterium TBS_037
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1,062,297 - -0.3
1,062,307 - +0.1
1,062,323 - -1.4
1,062,350 + -1.9
1,062,362 + -0.8
1,062,370 - -0.5
1,062,375 - -1.5
1,062,429 + -2.0
1,062,672 - MPMX20_01010 0.32 -0.4
1,062,672 - MPMX20_01010 0.32 -0.5
1,062,675 + MPMX20_01010 0.32 -0.6
1,062,690 + MPMX20_01010 0.34 -1.5
1,062,702 + MPMX20_01010 0.35 +2.2
1,062,721 - MPMX20_01010 0.37 -1.0
1,062,772 + MPMX20_01010 0.42 +0.3
1,062,886 + MPMX20_01010 0.54 +0.2
1,062,892 + MPMX20_01010 0.55 -1.3
1,062,900 - MPMX20_01010 0.55 -0.8
1,062,939 + MPMX20_01010 0.59 -1.4
1,062,981 - MPMX20_01010 0.64 -1.3
1,063,002 + MPMX20_01010 0.66 -0.2
1,063,115 + MPMX20_01010 0.77 -0.9
1,063,150 + MPMX20_01010 0.81 -0.2
1,063,232 - MPMX20_01010 0.89 +0.5
1,063,262 + -0.4
1,063,270 - +0.2

Or see this region's nucleotide sequence