Experiment: M9 plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00621 and MPMX20_00622 overlap by 4 nucleotides MPMX20_00622 and MPMX20_00623 are separated by 3 nucleotides MPMX20_00623 and MPMX20_00624 are separated by 39 nucleotides
MPMX20_00621: MPMX20_00621 - hypothetical protein, at 645,701 to 646,777
_00621
MPMX20_00622: MPMX20_00622 - hypothetical protein, at 646,774 to 648,045
_00622
MPMX20_00623: MPMX20_00623 - Threonine efflux protein, at 648,049 to 648,702
_00623
MPMX20_00624: MPMX20_00624 - HTH-type transcriptional activator RhaS, at 648,742 to 649,494
_00624
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 645.841 kb on - strand, within MPMX20_00621 at 645.856 kb on + strand, within MPMX20_00621 at 645.857 kb on + strand, within MPMX20_00621 at 645.857 kb on + strand, within MPMX20_00621 at 645.950 kb on - strand, within MPMX20_00621 at 646.073 kb on + strand, within MPMX20_00621 at 646.078 kb on + strand, within MPMX20_00621 at 646.089 kb on - strand, within MPMX20_00621 at 646.091 kb on - strand, within MPMX20_00621 at 646.104 kb on - strand, within MPMX20_00621 at 646.128 kb on + strand, within MPMX20_00621 at 646.161 kb on + strand, within MPMX20_00621 at 646.287 kb on + strand, within MPMX20_00621 at 646.425 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.430 kb on + strand, within MPMX20_00621 at 646.433 kb on - strand, within MPMX20_00621 at 646.438 kb on - strand, within MPMX20_00621 at 646.438 kb on - strand, within MPMX20_00621 at 646.438 kb on - strand, within MPMX20_00621 at 646.462 kb on + strand, within MPMX20_00621 at 646.469 kb on - strand, within MPMX20_00621 at 646.485 kb on + strand, within MPMX20_00621 at 646.488 kb on - strand, within MPMX20_00621 at 646.493 kb on - strand, within MPMX20_00621 at 646.515 kb on + strand, within MPMX20_00621 at 646.523 kb on - strand, within MPMX20_00621 at 646.632 kb on + strand, within MPMX20_00621 at 646.674 kb on + strand at 646.682 kb on - strand at 646.682 kb on - strand at 646.796 kb on - strand at 646.839 kb on + strand at 646.839 kb on + strand at 646.847 kb on - strand at 646.847 kb on - strand at 646.866 kb on - strand at 646.872 kb on - strand at 646.895 kb on - strand at 646.916 kb on + strand, within MPMX20_00622 at 646.924 kb on - strand, within MPMX20_00622 at 646.929 kb on - strand, within MPMX20_00622 at 646.934 kb on - strand, within MPMX20_00622 at 646.981 kb on - strand, within MPMX20_00622 at 647.048 kb on - strand, within MPMX20_00622 at 647.082 kb on - strand, within MPMX20_00622 at 647.135 kb on + strand, within MPMX20_00622 at 647.143 kb on - strand, within MPMX20_00622 at 647.143 kb on - strand, within MPMX20_00622 at 647.384 kb on - strand, within MPMX20_00622 at 647.454 kb on + strand, within MPMX20_00622 at 647.462 kb on - strand, within MPMX20_00622 at 647.488 kb on - strand, within MPMX20_00622 at 647.491 kb on - strand, within MPMX20_00622 at 647.504 kb on - strand, within MPMX20_00622 at 647.563 kb on + strand, within MPMX20_00622 at 647.650 kb on - strand, within MPMX20_00622 at 647.693 kb on - strand, within MPMX20_00622 at 647.712 kb on - strand, within MPMX20_00622 at 647.782 kb on - strand, within MPMX20_00622 at 647.873 kb on - strand, within MPMX20_00622 at 647.890 kb on - strand, within MPMX20_00622 at 647.922 kb on + strand at 647.922 kb on + strand at 647.930 kb on - strand at 647.945 kb on - strand at 647.945 kb on - strand at 648.005 kb on + strand at 648.020 kb on - strand at 648.061 kb on - strand at 648.152 kb on - strand, within MPMX20_00623 at 648.209 kb on + strand, within MPMX20_00623 at 648.209 kb on + strand, within MPMX20_00623 at 648.217 kb on - strand, within MPMX20_00623 at 648.341 kb on - strand, within MPMX20_00623 at 648.387 kb on - strand, within MPMX20_00623 at 648.387 kb on - strand, within MPMX20_00623 at 648.393 kb on + strand, within MPMX20_00623 at 648.426 kb on - strand, within MPMX20_00623 at 648.435 kb on + strand, within MPMX20_00623 at 648.443 kb on - strand, within MPMX20_00623 at 648.444 kb on + strand, within MPMX20_00623 at 648.456 kb on - strand, within MPMX20_00623 at 648.484 kb on - strand, within MPMX20_00623 at 648.489 kb on - strand, within MPMX20_00623 at 648.494 kb on - strand, within MPMX20_00623 at 648.536 kb on - strand, within MPMX20_00623 at 648.550 kb on - strand, within MPMX20_00623 at 648.555 kb on - strand, within MPMX20_00623 at 648.570 kb on + strand, within MPMX20_00623 at 648.588 kb on + strand, within MPMX20_00623 at 648.635 kb on + strand, within MPMX20_00623 at 648.643 kb on - strand at 648.643 kb on - strand at 648.643 kb on - strand at 648.643 kb on - strand at 648.643 kb on - strand at 648.643 kb on - strand at 648.671 kb on - strand at 648.686 kb on + strand at 648.694 kb on - strand at 648.704 kb on - strand at 648.732 kb on + strand at 648.732 kb on + strand at 648.740 kb on - strand at 648.760 kb on + strand at 648.795 kb on + strand at 648.797 kb on - strand at 648.892 kb on + strand, within MPMX20_00624 at 648.904 kb on + strand, within MPMX20_00624 at 648.908 kb on - strand, within MPMX20_00624 at 648.912 kb on - strand, within MPMX20_00624 at 648.960 kb on + strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 648.968 kb on - strand, within MPMX20_00624 at 649.027 kb on - strand, within MPMX20_00624 at 649.044 kb on + strand, within MPMX20_00624
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 645,841 - MPMX20_00621 0.13 -1.8 645,856 + MPMX20_00621 0.14 -2.3 645,857 + MPMX20_00621 0.14 -0.0 645,857 + MPMX20_00621 0.14 -1.7 645,950 - MPMX20_00621 0.23 -0.6 646,073 + MPMX20_00621 0.35 +1.5 646,078 + MPMX20_00621 0.35 +2.9 646,089 - MPMX20_00621 0.36 +3.1 646,091 - MPMX20_00621 0.36 -0.0 646,104 - MPMX20_00621 0.37 +0.0 646,128 + MPMX20_00621 0.40 -1.0 646,161 + MPMX20_00621 0.43 -0.5 646,287 + MPMX20_00621 0.54 -0.2 646,425 + MPMX20_00621 0.67 +0.9 646,430 + MPMX20_00621 0.68 +0.0 646,430 + MPMX20_00621 0.68 +0.4 646,430 + MPMX20_00621 0.68 -0.0 646,430 + MPMX20_00621 0.68 -1.2 646,430 + MPMX20_00621 0.68 -0.0 646,430 + MPMX20_00621 0.68 -1.0 646,430 + MPMX20_00621 0.68 -1.0 646,433 - MPMX20_00621 0.68 +1.5 646,438 - MPMX20_00621 0.68 +0.8 646,438 - MPMX20_00621 0.68 -0.6 646,438 - MPMX20_00621 0.68 -1.0 646,462 + MPMX20_00621 0.71 +0.2 646,469 - MPMX20_00621 0.71 -0.2 646,485 + MPMX20_00621 0.73 -1.0 646,488 - MPMX20_00621 0.73 +3.7 646,493 - MPMX20_00621 0.74 +1.0 646,515 + MPMX20_00621 0.76 -0.3 646,523 - MPMX20_00621 0.76 -1.3 646,632 + MPMX20_00621 0.86 -0.5 646,674 + -0.5 646,682 - -0.3 646,682 - -1.2 646,796 - -0.2 646,839 + -0.2 646,839 + +0.1 646,847 - -0.9 646,847 - -0.7 646,866 - -1.9 646,872 - -0.5 646,895 - -1.3 646,916 + MPMX20_00622 0.11 -0.1 646,924 - MPMX20_00622 0.12 +0.4 646,929 - MPMX20_00622 0.12 +0.7 646,934 - MPMX20_00622 0.13 -0.7 646,981 - MPMX20_00622 0.16 +1.1 647,048 - MPMX20_00622 0.22 +0.8 647,082 - MPMX20_00622 0.24 -1.1 647,135 + MPMX20_00622 0.28 +0.4 647,143 - MPMX20_00622 0.29 -1.6 647,143 - MPMX20_00622 0.29 -2.0 647,384 - MPMX20_00622 0.48 +2.1 647,454 + MPMX20_00622 0.53 +6.3 647,462 - MPMX20_00622 0.54 -1.9 647,488 - MPMX20_00622 0.56 +1.4 647,491 - MPMX20_00622 0.56 +1.1 647,504 - MPMX20_00622 0.57 +0.9 647,563 + MPMX20_00622 0.62 -0.6 647,650 - MPMX20_00622 0.69 +0.3 647,693 - MPMX20_00622 0.72 +0.5 647,712 - MPMX20_00622 0.74 +2.1 647,782 - MPMX20_00622 0.79 -0.0 647,873 - MPMX20_00622 0.86 +0.5 647,890 - MPMX20_00622 0.88 -0.2 647,922 + +0.1 647,922 + -0.5 647,930 - -0.4 647,945 - +3.7 647,945 - +0.0 648,005 + -0.4 648,020 - +0.1 648,061 - +0.7 648,152 - MPMX20_00623 0.16 +2.1 648,209 + MPMX20_00623 0.24 -0.5 648,209 + MPMX20_00623 0.24 -0.7 648,217 - MPMX20_00623 0.26 -0.8 648,341 - MPMX20_00623 0.45 -0.2 648,387 - MPMX20_00623 0.52 -0.8 648,387 - MPMX20_00623 0.52 -0.5 648,393 + MPMX20_00623 0.53 -0.1 648,426 - MPMX20_00623 0.58 -1.2 648,435 + MPMX20_00623 0.59 +0.0 648,443 - MPMX20_00623 0.60 +0.1 648,444 + MPMX20_00623 0.60 -1.5 648,456 - MPMX20_00623 0.62 +1.9 648,484 - MPMX20_00623 0.67 -0.4 648,489 - MPMX20_00623 0.67 -0.2 648,494 - MPMX20_00623 0.68 -2.5 648,536 - MPMX20_00623 0.74 +0.1 648,550 - MPMX20_00623 0.77 -0.5 648,555 - MPMX20_00623 0.77 +1.5 648,570 + MPMX20_00623 0.80 -0.7 648,588 + MPMX20_00623 0.82 +0.5 648,635 + MPMX20_00623 0.90 -0.1 648,643 - -0.2 648,643 - -0.3 648,643 - -1.2 648,643 - -0.5 648,643 - -1.1 648,643 - -0.6 648,671 - -1.3 648,686 + -1.1 648,694 - -0.5 648,704 - +0.6 648,732 + +1.8 648,732 + -1.5 648,740 - -2.1 648,760 + +1.1 648,795 + +3.1 648,797 - +0.5 648,892 + MPMX20_00624 0.20 -0.4 648,904 + MPMX20_00624 0.22 -0.8 648,908 - MPMX20_00624 0.22 -0.5 648,912 - MPMX20_00624 0.23 -1.2 648,960 + MPMX20_00624 0.29 -1.3 648,968 - MPMX20_00624 0.30 +0.3 648,968 - MPMX20_00624 0.30 +1.4 648,968 - MPMX20_00624 0.30 +0.6 648,968 - MPMX20_00624 0.30 -1.7 648,968 - MPMX20_00624 0.30 -0.0 648,968 - MPMX20_00624 0.30 +0.0 649,027 - MPMX20_00624 0.38 -2.0 649,044 + MPMX20_00624 0.40 -0.7
Or see this region's nucleotide sequence