Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03440

Experiment: 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03439 and MPMX20_03440 are separated by 15 nucleotidesMPMX20_03440 and MPMX20_03441 are separated by 185 nucleotidesMPMX20_03441 and MPMX20_03442 overlap by 4 nucleotides MPMX20_03439: MPMX20_03439 - Signal peptidase I, at 3,626,051 to 3,627,025 _03439 MPMX20_03440: MPMX20_03440 - Elongation factor 4, at 3,627,041 to 3,628,840 _03440 MPMX20_03441: MPMX20_03441 - Protein RseC, at 3,629,026 to 3,629,502 _03441 MPMX20_03442: MPMX20_03442 - Sigma-E factor regulatory protein RseB, at 3,629,499 to 3,630,452 _03442 Position (kb) 3627 3628 3629Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.085 kb on - strandat 3626.108 kb on - strandat 3626.118 kb on - strandat 3626.118 kb on - strandat 3627.069 kb on - strandat 3627.227 kb on - strand, within MPMX20_03440at 3627.369 kb on - strand, within MPMX20_03440at 3627.406 kb on - strand, within MPMX20_03440at 3627.568 kb on + strand, within MPMX20_03440at 3627.574 kb on - strand, within MPMX20_03440at 3627.590 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.624 kb on - strand, within MPMX20_03440at 3627.742 kb on - strand, within MPMX20_03440at 3627.779 kb on - strand, within MPMX20_03440at 3627.839 kb on - strand, within MPMX20_03440at 3627.933 kb on - strand, within MPMX20_03440at 3627.933 kb on - strand, within MPMX20_03440at 3627.949 kb on - strand, within MPMX20_03440at 3628.024 kb on - strand, within MPMX20_03440at 3628.494 kb on - strand, within MPMX20_03440at 3628.496 kb on - strand, within MPMX20_03440at 3628.599 kb on - strand, within MPMX20_03440at 3628.608 kb on - strand, within MPMX20_03440at 3628.882 kb on + strandat 3628.882 kb on + strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.890 kb on - strandat 3628.953 kb on - strandat 3629.026 kb on + strandat 3629.034 kb on + strandat 3629.062 kb on - strandat 3629.070 kb on + strandat 3629.076 kb on + strand, within MPMX20_03441at 3629.100 kb on + strand, within MPMX20_03441at 3629.121 kb on + strand, within MPMX20_03441at 3629.121 kb on + strand, within MPMX20_03441at 3629.129 kb on - strand, within MPMX20_03441at 3629.135 kb on + strand, within MPMX20_03441at 3629.143 kb on - strand, within MPMX20_03441at 3629.154 kb on + strand, within MPMX20_03441at 3629.162 kb on - strand, within MPMX20_03441at 3629.198 kb on + strand, within MPMX20_03441at 3629.206 kb on - strand, within MPMX20_03441at 3629.236 kb on - strand, within MPMX20_03441at 3629.255 kb on + strand, within MPMX20_03441at 3629.281 kb on - strand, within MPMX20_03441at 3629.383 kb on - strand, within MPMX20_03441at 3629.439 kb on + strand, within MPMX20_03441at 3629.516 kb on + strandat 3629.530 kb on + strandat 3629.571 kb on + strandat 3629.577 kb on - strandat 3629.594 kb on + strandat 3629.594 kb on + strandat 3629.641 kb on - strand, within MPMX20_03442at 3629.641 kb on - strand, within MPMX20_03442at 3629.753 kb on - strand, within MPMX20_03442at 3629.818 kb on + strand, within MPMX20_03442

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037
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3,626,085 - -3.0
3,626,085 - +0.3
3,626,085 - -0.5
3,626,085 - +4.0
3,626,108 - +1.1
3,626,118 - -0.7
3,626,118 - -2.6
3,627,069 - -2.2
3,627,227 - MPMX20_03440 0.10 +0.2
3,627,369 - MPMX20_03440 0.18 +0.5
3,627,406 - MPMX20_03440 0.20 -0.2
3,627,568 + MPMX20_03440 0.29 +0.5
3,627,574 - MPMX20_03440 0.30 -1.0
3,627,590 - MPMX20_03440 0.30 -1.6
3,627,624 - MPMX20_03440 0.32 -1.2
3,627,624 - MPMX20_03440 0.32 -0.7
3,627,624 - MPMX20_03440 0.32 -1.5
3,627,624 - MPMX20_03440 0.32 -0.5
3,627,742 - MPMX20_03440 0.39 -1.2
3,627,779 - MPMX20_03440 0.41 +1.1
3,627,839 - MPMX20_03440 0.44 +1.1
3,627,933 - MPMX20_03440 0.50 -0.7
3,627,933 - MPMX20_03440 0.50 -1.0
3,627,949 - MPMX20_03440 0.50 -1.3
3,628,024 - MPMX20_03440 0.55 -1.3
3,628,494 - MPMX20_03440 0.81 +0.5
3,628,496 - MPMX20_03440 0.81 -0.2
3,628,599 - MPMX20_03440 0.87 +0.1
3,628,608 - MPMX20_03440 0.87 -0.7
3,628,882 + +2.5
3,628,882 + -1.5
3,628,890 - -0.2
3,628,890 - +0.3
3,628,890 - -2.0
3,628,890 - +0.0
3,628,890 - -0.2
3,628,953 - -2.2
3,629,026 + -1.2
3,629,034 + -0.6
3,629,062 - +1.0
3,629,070 + -0.7
3,629,076 + MPMX20_03441 0.10 -2.3
3,629,100 + MPMX20_03441 0.16 -1.5
3,629,121 + MPMX20_03441 0.20 +1.1
3,629,121 + MPMX20_03441 0.20 -1.3
3,629,129 - MPMX20_03441 0.22 +0.5
3,629,135 + MPMX20_03441 0.23 -0.2
3,629,143 - MPMX20_03441 0.25 -0.5
3,629,154 + MPMX20_03441 0.27 +1.1
3,629,162 - MPMX20_03441 0.29 +0.7
3,629,198 + MPMX20_03441 0.36 +0.1
3,629,206 - MPMX20_03441 0.38 -0.6
3,629,236 - MPMX20_03441 0.44 -2.2
3,629,255 + MPMX20_03441 0.48 +1.1
3,629,281 - MPMX20_03441 0.53 -0.3
3,629,383 - MPMX20_03441 0.75 -0.3
3,629,439 + MPMX20_03441 0.87 -2.6
3,629,516 + -1.0
3,629,530 + +2.0
3,629,571 + +0.5
3,629,577 - +2.3
3,629,594 + -0.9
3,629,594 + -1.8
3,629,641 - MPMX20_03442 0.15 +8.7
3,629,641 - MPMX20_03442 0.15 -2.5
3,629,753 - MPMX20_03442 0.27 +2.7
3,629,818 + MPMX20_03442 0.33 -0.2

Or see this region's nucleotide sequence