Experiment: 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02617 and MPMX20_02618 overlap by 8 nucleotides MPMX20_02618 and MPMX20_02619 are separated by 3 nucleotides MPMX20_02619 and MPMX20_02620 are separated by 36 nucleotides
MPMX20_02617: MPMX20_02617 - Nitrate/nitrite sensor protein NarX, at 2,756,260 to 2,758,056
_02617
MPMX20_02618: MPMX20_02618 - Nitrate/nitrite response regulator protein NarL, at 2,758,049 to 2,758,699
_02618
MPMX20_02619: MPMX20_02619 - Invasin, at 2,758,703 to 2,760,148
_02619
MPMX20_02620: MPMX20_02620 - Nitrate reductase, at 2,760,185 to 2,762,683
_02620
Position (kb)
2758
2759
2760
2761 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 2757.733 kb on - strand, within MPMX20_02617 at 2757.738 kb on - strand, within MPMX20_02617 at 2757.742 kb on - strand, within MPMX20_02617 at 2757.745 kb on - strand, within MPMX20_02617 at 2757.775 kb on + strand, within MPMX20_02617 at 2757.775 kb on + strand, within MPMX20_02617 at 2757.775 kb on + strand, within MPMX20_02617 at 2757.775 kb on + strand, within MPMX20_02617 at 2757.783 kb on - strand, within MPMX20_02617 at 2757.867 kb on - strand, within MPMX20_02617 at 2757.938 kb on + strand at 2758.031 kb on - strand at 2758.031 kb on - strand at 2758.031 kb on - strand at 2758.036 kb on - strand at 2758.045 kb on + strand at 2758.177 kb on - strand, within MPMX20_02618 at 2758.256 kb on - strand, within MPMX20_02618 at 2758.396 kb on + strand, within MPMX20_02618 at 2758.404 kb on - strand, within MPMX20_02618 at 2758.404 kb on - strand, within MPMX20_02618 at 2758.404 kb on - strand, within MPMX20_02618 at 2758.404 kb on - strand, within MPMX20_02618 at 2758.404 kb on - strand, within MPMX20_02618 at 2758.479 kb on - strand, within MPMX20_02618 at 2758.520 kb on - strand, within MPMX20_02618 at 2758.558 kb on - strand, within MPMX20_02618 at 2758.558 kb on - strand, within MPMX20_02618 at 2758.584 kb on + strand, within MPMX20_02618 at 2758.674 kb on + strand at 2758.674 kb on + strand at 2758.742 kb on + strand at 2758.960 kb on + strand, within MPMX20_02619 at 2759.012 kb on - strand, within MPMX20_02619 at 2759.049 kb on - strand, within MPMX20_02619 at 2759.194 kb on + strand, within MPMX20_02619 at 2759.312 kb on - strand, within MPMX20_02619 at 2759.325 kb on + strand, within MPMX20_02619 at 2759.333 kb on - strand, within MPMX20_02619 at 2759.333 kb on - strand, within MPMX20_02619 at 2759.333 kb on - strand, within MPMX20_02619 at 2759.335 kb on + strand, within MPMX20_02619 at 2759.335 kb on + strand, within MPMX20_02619 at 2759.343 kb on - strand, within MPMX20_02619 at 2759.415 kb on - strand, within MPMX20_02619 at 2759.434 kb on - strand, within MPMX20_02619 at 2759.443 kb on + strand, within MPMX20_02619 at 2759.610 kb on + strand, within MPMX20_02619 at 2759.618 kb on - strand, within MPMX20_02619 at 2759.618 kb on - strand, within MPMX20_02619 at 2759.636 kb on + strand, within MPMX20_02619 at 2759.667 kb on - strand, within MPMX20_02619 at 2759.694 kb on - strand, within MPMX20_02619 at 2759.710 kb on + strand, within MPMX20_02619 at 2759.710 kb on + strand, within MPMX20_02619 at 2759.718 kb on - strand, within MPMX20_02619 at 2759.718 kb on - strand, within MPMX20_02619 at 2759.773 kb on - strand, within MPMX20_02619 at 2759.894 kb on + strand, within MPMX20_02619 at 2759.991 kb on - strand, within MPMX20_02619 at 2760.051 kb on + strand at 2760.059 kb on - strand at 2760.105 kb on + strand at 2760.105 kb on + strand at 2760.146 kb on - strand at 2760.252 kb on + strand at 2760.258 kb on - strand at 2760.265 kb on + strand at 2760.268 kb on - strand at 2760.273 kb on - strand at 2760.273 kb on - strand at 2760.342 kb on - strand at 2760.366 kb on - strand at 2760.372 kb on - strand at 2760.456 kb on - strand, within MPMX20_02620 at 2760.480 kb on + strand, within MPMX20_02620 at 2760.516 kb on + strand, within MPMX20_02620 at 2760.524 kb on - strand, within MPMX20_02620 at 2760.546 kb on - strand, within MPMX20_02620 at 2760.589 kb on + strand, within MPMX20_02620 at 2760.597 kb on - strand, within MPMX20_02620 at 2760.597 kb on - strand, within MPMX20_02620 at 2760.687 kb on - strand, within MPMX20_02620 at 2760.692 kb on + strand, within MPMX20_02620 at 2760.837 kb on + strand, within MPMX20_02620 at 2760.845 kb on - strand, within MPMX20_02620 at 2760.852 kb on + strand, within MPMX20_02620 at 2760.853 kb on - strand, within MPMX20_02620 at 2760.860 kb on - strand, within MPMX20_02620 at 2760.878 kb on - strand, within MPMX20_02620 at 2760.914 kb on - strand, within MPMX20_02620 at 2760.925 kb on - strand, within MPMX20_02620 at 2760.937 kb on - strand, within MPMX20_02620 at 2760.979 kb on + strand, within MPMX20_02620 at 2760.979 kb on + strand, within MPMX20_02620 at 2760.979 kb on + strand, within MPMX20_02620 at 2760.979 kb on + strand, within MPMX20_02620 at 2760.979 kb on + strand, within MPMX20_02620 at 2760.980 kb on - strand, within MPMX20_02620 at 2760.984 kb on + strand, within MPMX20_02620 at 2760.984 kb on + strand, within MPMX20_02620 at 2760.984 kb on + strand, within MPMX20_02620 at 2760.984 kb on + strand, within MPMX20_02620 at 2760.987 kb on - strand, within MPMX20_02620 at 2760.992 kb on - strand, within MPMX20_02620 at 2760.992 kb on - strand, within MPMX20_02620 at 2760.992 kb on - strand, within MPMX20_02620 at 2760.992 kb on - strand, within MPMX20_02620 at 2761.007 kb on + strand, within MPMX20_02620 at 2761.115 kb on - strand, within MPMX20_02620 at 2761.147 kb on - strand, within MPMX20_02620
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 2,757,733 - MPMX20_02617 0.82 -0.2 2,757,738 - MPMX20_02617 0.82 +2.2 2,757,742 - MPMX20_02617 0.82 +1.4 2,757,745 - MPMX20_02617 0.83 +0.5 2,757,775 + MPMX20_02617 0.84 +1.1 2,757,775 + MPMX20_02617 0.84 +0.4 2,757,775 + MPMX20_02617 0.84 +0.6 2,757,775 + MPMX20_02617 0.84 -2.2 2,757,783 - MPMX20_02617 0.85 +0.2 2,757,867 - MPMX20_02617 0.89 -0.3 2,757,938 + -1.6 2,758,031 - +0.2 2,758,031 - -0.7 2,758,031 - -2.6 2,758,036 - -1.5 2,758,045 + -1.1 2,758,177 - MPMX20_02618 0.20 +4.6 2,758,256 - MPMX20_02618 0.32 +0.2 2,758,396 + MPMX20_02618 0.53 -0.2 2,758,404 - MPMX20_02618 0.55 +1.8 2,758,404 - MPMX20_02618 0.55 +1.3 2,758,404 - MPMX20_02618 0.55 -1.3 2,758,404 - MPMX20_02618 0.55 +0.5 2,758,404 - MPMX20_02618 0.55 +0.3 2,758,479 - MPMX20_02618 0.66 -1.0 2,758,520 - MPMX20_02618 0.72 -0.8 2,758,558 - MPMX20_02618 0.78 -1.2 2,758,558 - MPMX20_02618 0.78 +1.0 2,758,584 + MPMX20_02618 0.82 +1.1 2,758,674 + -1.4 2,758,674 + +1.9 2,758,742 + +1.8 2,758,960 + MPMX20_02619 0.18 -0.6 2,759,012 - MPMX20_02619 0.21 -4.0 2,759,049 - MPMX20_02619 0.24 +3.3 2,759,194 + MPMX20_02619 0.34 -0.7 2,759,312 - MPMX20_02619 0.42 -0.7 2,759,325 + MPMX20_02619 0.43 +2.0 2,759,333 - MPMX20_02619 0.44 -1.6 2,759,333 - MPMX20_02619 0.44 +0.7 2,759,333 - MPMX20_02619 0.44 -0.3 2,759,335 + MPMX20_02619 0.44 -2.9 2,759,335 + MPMX20_02619 0.44 -0.0 2,759,343 - MPMX20_02619 0.44 -0.7 2,759,415 - MPMX20_02619 0.49 -1.2 2,759,434 - MPMX20_02619 0.51 -2.4 2,759,443 + MPMX20_02619 0.51 -0.5 2,759,610 + MPMX20_02619 0.63 -1.0 2,759,618 - MPMX20_02619 0.63 +0.6 2,759,618 - MPMX20_02619 0.63 -0.0 2,759,636 + MPMX20_02619 0.65 -0.7 2,759,667 - MPMX20_02619 0.67 -2.7 2,759,694 - MPMX20_02619 0.69 -1.6 2,759,710 + MPMX20_02619 0.70 -0.5 2,759,710 + MPMX20_02619 0.70 -1.9 2,759,718 - MPMX20_02619 0.70 -0.9 2,759,718 - MPMX20_02619 0.70 -0.4 2,759,773 - MPMX20_02619 0.74 -0.7 2,759,894 + MPMX20_02619 0.82 +1.7 2,759,991 - MPMX20_02619 0.89 -0.2 2,760,051 + -1.4 2,760,059 - -0.6 2,760,105 + -3.5 2,760,105 + -0.3 2,760,146 - -1.5 2,760,252 + -1.2 2,760,258 - +1.0 2,760,265 + -1.5 2,760,268 - +0.1 2,760,273 - -0.2 2,760,273 - -0.7 2,760,342 - -0.8 2,760,366 - +0.5 2,760,372 - +2.0 2,760,456 - MPMX20_02620 0.11 -0.2 2,760,480 + MPMX20_02620 0.12 -1.5 2,760,516 + MPMX20_02620 0.13 -0.4 2,760,524 - MPMX20_02620 0.14 +3.1 2,760,546 - MPMX20_02620 0.14 +0.7 2,760,589 + MPMX20_02620 0.16 +0.8 2,760,597 - MPMX20_02620 0.16 -1.9 2,760,597 - MPMX20_02620 0.16 +2.3 2,760,687 - MPMX20_02620 0.20 -2.0 2,760,692 + MPMX20_02620 0.20 +1.3 2,760,837 + MPMX20_02620 0.26 +0.5 2,760,845 - MPMX20_02620 0.26 -0.5 2,760,852 + MPMX20_02620 0.27 -1.5 2,760,853 - MPMX20_02620 0.27 -1.7 2,760,860 - MPMX20_02620 0.27 -3.2 2,760,878 - MPMX20_02620 0.28 +0.3 2,760,914 - MPMX20_02620 0.29 +0.2 2,760,925 - MPMX20_02620 0.30 -1.7 2,760,937 - MPMX20_02620 0.30 +0.8 2,760,979 + MPMX20_02620 0.32 -0.0 2,760,979 + MPMX20_02620 0.32 -0.3 2,760,979 + MPMX20_02620 0.32 -1.7 2,760,979 + MPMX20_02620 0.32 +1.9 2,760,979 + MPMX20_02620 0.32 +0.2 2,760,980 - MPMX20_02620 0.32 -0.3 2,760,984 + MPMX20_02620 0.32 -2.0 2,760,984 + MPMX20_02620 0.32 +1.2 2,760,984 + MPMX20_02620 0.32 +0.4 2,760,984 + MPMX20_02620 0.32 -0.0 2,760,987 - MPMX20_02620 0.32 -2.7 2,760,992 - MPMX20_02620 0.32 -0.6 2,760,992 - MPMX20_02620 0.32 -0.9 2,760,992 - MPMX20_02620 0.32 +0.4 2,760,992 - MPMX20_02620 0.32 -2.4 2,761,007 + MPMX20_02620 0.33 -1.1 2,761,115 - MPMX20_02620 0.37 +1.4 2,761,147 - MPMX20_02620 0.38 -1.0
Or see this region's nucleotide sequence