Experiment: 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01702 and MPMX20_01703 are separated by 423 nucleotides MPMX20_01703 and MPMX20_01704 are separated by 115 nucleotides MPMX20_01704 and MPMX20_01705 are separated by 32 nucleotides
MPMX20_01702: MPMX20_01702 - Bifunctional protein PutA, at 1,797,227 to 1,801,189
_01702
MPMX20_01703: MPMX20_01703 - Sodium/proline symporter, at 1,801,613 to 1,803,121
_01703
MPMX20_01704: MPMX20_01704 - hypothetical protein, at 1,803,237 to 1,803,656
_01704
MPMX20_01705: MPMX20_01705 - Nucleoside permease NupC, at 1,803,689 to 1,804,873
_01705
Position (kb)
1801
1802
1803
1804 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1800.692 kb on + strand, within MPMX20_01702 at 1800.692 kb on + strand, within MPMX20_01702 at 1800.692 kb on + strand, within MPMX20_01702 at 1800.692 kb on + strand, within MPMX20_01702 at 1800.692 kb on + strand, within MPMX20_01702 at 1800.700 kb on - strand, within MPMX20_01702 at 1800.704 kb on + strand, within MPMX20_01702 at 1800.705 kb on - strand, within MPMX20_01702 at 1800.709 kb on + strand, within MPMX20_01702 at 1800.709 kb on + strand, within MPMX20_01702 at 1800.709 kb on + strand, within MPMX20_01702 at 1800.717 kb on - strand, within MPMX20_01702 at 1800.734 kb on + strand, within MPMX20_01702 at 1800.751 kb on - strand, within MPMX20_01702 at 1800.815 kb on - strand at 1800.856 kb on - strand at 1800.861 kb on - strand at 1801.045 kb on + strand at 1801.062 kb on + strand at 1801.131 kb on + strand at 1801.131 kb on + strand at 1801.131 kb on + strand at 1801.131 kb on + strand at 1801.131 kb on + strand at 1801.139 kb on - strand at 1801.139 kb on - strand at 1801.139 kb on - strand at 1801.152 kb on + strand at 1801.163 kb on - strand at 1801.170 kb on - strand at 1801.170 kb on - strand at 1801.176 kb on - strand at 1801.176 kb on - strand at 1801.178 kb on + strand at 1801.178 kb on + strand at 1801.179 kb on + strand at 1801.186 kb on - strand at 1801.187 kb on - strand at 1801.197 kb on - strand at 1801.425 kb on - strand at 1801.499 kb on + strand at 1801.499 kb on + strand at 1801.499 kb on + strand at 1801.507 kb on - strand at 1801.507 kb on - strand at 1801.517 kb on - strand at 1801.531 kb on + strand at 1801.550 kb on + strand at 1801.583 kb on - strand at 1801.584 kb on + strand at 1801.705 kb on - strand at 1801.729 kb on + strand at 1801.734 kb on + strand at 1801.734 kb on + strand at 1801.734 kb on + strand at 1801.734 kb on + strand at 1801.742 kb on - strand at 1801.742 kb on - strand at 1801.742 kb on - strand at 1801.742 kb on - strand at 1801.750 kb on + strand at 1801.778 kb on - strand, within MPMX20_01703 at 1801.837 kb on + strand, within MPMX20_01703 at 1801.848 kb on + strand, within MPMX20_01703 at 1801.848 kb on + strand, within MPMX20_01703 at 1801.848 kb on + strand, within MPMX20_01703 at 1801.856 kb on - strand, within MPMX20_01703 at 1801.856 kb on - strand, within MPMX20_01703 at 1801.931 kb on + strand, within MPMX20_01703 at 1801.931 kb on + strand, within MPMX20_01703 at 1801.931 kb on + strand, within MPMX20_01703 at 1802.003 kb on - strand, within MPMX20_01703 at 1802.011 kb on - strand, within MPMX20_01703 at 1802.013 kb on - strand, within MPMX20_01703 at 1802.063 kb on - strand, within MPMX20_01703 at 1802.076 kb on + strand, within MPMX20_01703 at 1802.107 kb on + strand, within MPMX20_01703 at 1802.314 kb on - strand, within MPMX20_01703 at 1802.340 kb on + strand, within MPMX20_01703 at 1802.345 kb on + strand, within MPMX20_01703 at 1802.348 kb on - strand, within MPMX20_01703 at 1802.353 kb on - strand, within MPMX20_01703 at 1802.363 kb on - strand, within MPMX20_01703 at 1802.383 kb on + strand, within MPMX20_01703 at 1802.391 kb on - strand, within MPMX20_01703 at 1802.391 kb on - strand, within MPMX20_01703 at 1802.452 kb on - strand, within MPMX20_01703 at 1802.518 kb on + strand, within MPMX20_01703 at 1802.526 kb on + strand, within MPMX20_01703 at 1802.628 kb on + strand, within MPMX20_01703 at 1802.629 kb on - strand, within MPMX20_01703 at 1802.629 kb on - strand, within MPMX20_01703 at 1802.640 kb on + strand, within MPMX20_01703 at 1802.648 kb on + strand, within MPMX20_01703 at 1802.648 kb on + strand, within MPMX20_01703 at 1802.656 kb on - strand, within MPMX20_01703 at 1802.658 kb on + strand, within MPMX20_01703 at 1802.658 kb on + strand, within MPMX20_01703 at 1802.666 kb on - strand, within MPMX20_01703 at 1802.725 kb on + strand, within MPMX20_01703 at 1802.733 kb on - strand, within MPMX20_01703 at 1802.739 kb on + strand, within MPMX20_01703 at 1802.820 kb on - strand, within MPMX20_01703 at 1802.948 kb on + strand, within MPMX20_01703 at 1802.958 kb on + strand, within MPMX20_01703 at 1802.966 kb on - strand, within MPMX20_01703 at 1803.033 kb on - strand at 1803.080 kb on + strand at 1803.082 kb on + strand at 1803.082 kb on + strand at 1803.082 kb on + strand at 1803.087 kb on + strand at 1803.090 kb on - strand at 1803.090 kb on - strand at 1803.090 kb on - strand at 1803.107 kb on - strand at 1803.145 kb on + strand at 1803.145 kb on + strand at 1803.153 kb on - strand at 1803.153 kb on - strand at 1803.211 kb on + strand at 1803.219 kb on - strand at 1803.219 kb on - strand at 1803.262 kb on - strand at 1803.297 kb on - strand, within MPMX20_01704 at 1803.315 kb on + strand, within MPMX20_01704 at 1803.406 kb on + strand, within MPMX20_01704 at 1803.454 kb on + strand, within MPMX20_01704 at 1803.534 kb on - strand, within MPMX20_01704 at 1803.542 kb on + strand, within MPMX20_01704 at 1803.619 kb on - strand at 1803.628 kb on - strand at 1803.633 kb on + strand at 1803.643 kb on - strand at 1803.643 kb on - strand at 1803.694 kb on + strand at 1803.728 kb on + strand at 1803.733 kb on + strand at 1803.741 kb on + strand at 1803.749 kb on - strand at 1803.774 kb on + strand at 1803.774 kb on + strand at 1803.782 kb on - strand at 1803.790 kb on - strand at 1803.798 kb on + strand at 1803.838 kb on - strand, within MPMX20_01705 at 1803.851 kb on - strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.887 kb on + strand, within MPMX20_01705 at 1803.895 kb on - strand, within MPMX20_01705 at 1803.895 kb on - strand, within MPMX20_01705 at 1803.895 kb on - strand, within MPMX20_01705 at 1803.895 kb on - strand, within MPMX20_01705 at 1803.910 kb on + strand, within MPMX20_01705 at 1803.910 kb on + strand, within MPMX20_01705 at 1803.910 kb on + strand, within MPMX20_01705 at 1803.910 kb on + strand, within MPMX20_01705 at 1803.951 kb on - strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.952 kb on + strand, within MPMX20_01705 at 1803.960 kb on - strand, within MPMX20_01705 at 1803.960 kb on - strand, within MPMX20_01705 at 1803.960 kb on - strand, within MPMX20_01705 at 1803.980 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.985 kb on + strand, within MPMX20_01705 at 1803.987 kb on + strand, within MPMX20_01705 at 1803.993 kb on + strand, within MPMX20_01705 at 1803.993 kb on - strand, within MPMX20_01705 at 1803.993 kb on - strand, within MPMX20_01705 at 1803.993 kb on - strand, within MPMX20_01705 at 1803.993 kb on - strand, within MPMX20_01705 at 1803.999 kb on + strand, within MPMX20_01705 at 1804.004 kb on + strand, within MPMX20_01705 at 1804.025 kb on + strand, within MPMX20_01705 at 1804.025 kb on + strand, within MPMX20_01705 at 1804.025 kb on + strand, within MPMX20_01705 at 1804.025 kb on + strand, within MPMX20_01705 at 1804.025 kb on + strand, within MPMX20_01705 at 1804.033 kb on - strand, within MPMX20_01705 at 1804.033 kb on - strand, within MPMX20_01705 at 1804.033 kb on - strand, within MPMX20_01705 at 1804.034 kb on - strand, within MPMX20_01705 at 1804.057 kb on + strand, within MPMX20_01705 at 1804.061 kb on + strand, within MPMX20_01705 at 1804.061 kb on + strand, within MPMX20_01705 at 1804.061 kb on + strand, within MPMX20_01705 at 1804.065 kb on - strand, within MPMX20_01705 at 1804.080 kb on + strand, within MPMX20_01705 at 1804.115 kb on - strand, within MPMX20_01705
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus megaterium TBS_037 remove 1,800,692 + MPMX20_01702 0.87 -2.6 1,800,692 + MPMX20_01702 0.87 +1.4 1,800,692 + MPMX20_01702 0.87 -1.4 1,800,692 + MPMX20_01702 0.87 +1.2 1,800,692 + MPMX20_01702 0.87 -2.6 1,800,700 - MPMX20_01702 0.88 -3.3 1,800,704 + MPMX20_01702 0.88 -1.1 1,800,705 - MPMX20_01702 0.88 -2.1 1,800,709 + MPMX20_01702 0.88 -0.9 1,800,709 + MPMX20_01702 0.88 -1.4 1,800,709 + MPMX20_01702 0.88 -1.7 1,800,717 - MPMX20_01702 0.88 +0.4 1,800,734 + MPMX20_01702 0.88 -1.6 1,800,751 - MPMX20_01702 0.89 -1.7 1,800,815 - -2.1 1,800,856 - +0.6 1,800,861 - -0.9 1,801,045 + -0.5 1,801,062 + -1.6 1,801,131 + -0.2 1,801,131 + -2.3 1,801,131 + -1.8 1,801,131 + -0.9 1,801,131 + +0.3 1,801,139 - +1.0 1,801,139 - -2.1 1,801,139 - -3.2 1,801,152 + +0.4 1,801,163 - -1.3 1,801,170 - -0.9 1,801,170 - -1.5 1,801,176 - -0.4 1,801,176 - -4.0 1,801,178 + -0.8 1,801,178 + +0.5 1,801,179 + -1.0 1,801,186 - -0.9 1,801,187 - -1.1 1,801,197 - -0.4 1,801,425 - +2.2 1,801,499 + +1.0 1,801,499 + -3.6 1,801,499 + -0.5 1,801,507 - +1.8 1,801,507 - +0.8 1,801,517 - -1.8 1,801,531 + -1.4 1,801,550 + +0.7 1,801,583 - +0.8 1,801,584 + +0.5 1,801,705 - +1.0 1,801,729 + -1.7 1,801,734 + -0.1 1,801,734 + +0.4 1,801,734 + +2.9 1,801,734 + -2.5 1,801,742 - -2.4 1,801,742 - -1.3 1,801,742 - +0.7 1,801,742 - -3.1 1,801,750 + -1.0 1,801,778 - MPMX20_01703 0.11 -0.2 1,801,837 + MPMX20_01703 0.15 -1.0 1,801,848 + MPMX20_01703 0.16 -3.5 1,801,848 + MPMX20_01703 0.16 -0.4 1,801,848 + MPMX20_01703 0.16 -0.8 1,801,856 - MPMX20_01703 0.16 -0.7 1,801,856 - MPMX20_01703 0.16 -1.3 1,801,931 + MPMX20_01703 0.21 -2.1 1,801,931 + MPMX20_01703 0.21 -0.8 1,801,931 + MPMX20_01703 0.21 -0.7 1,802,003 - MPMX20_01703 0.26 -0.1 1,802,011 - MPMX20_01703 0.26 -0.5 1,802,013 - MPMX20_01703 0.27 -0.1 1,802,063 - MPMX20_01703 0.30 -0.2 1,802,076 + MPMX20_01703 0.31 -3.2 1,802,107 + MPMX20_01703 0.33 -1.3 1,802,314 - MPMX20_01703 0.46 -1.0 1,802,340 + MPMX20_01703 0.48 +1.1 1,802,345 + MPMX20_01703 0.49 -3.3 1,802,348 - MPMX20_01703 0.49 +0.2 1,802,353 - MPMX20_01703 0.49 -0.5 1,802,363 - MPMX20_01703 0.50 -1.6 1,802,383 + MPMX20_01703 0.51 -1.0 1,802,391 - MPMX20_01703 0.52 -2.1 1,802,391 - MPMX20_01703 0.52 -0.4 1,802,452 - MPMX20_01703 0.56 +0.4 1,802,518 + MPMX20_01703 0.60 +2.2 1,802,526 + MPMX20_01703 0.61 -0.2 1,802,628 + MPMX20_01703 0.67 -0.3 1,802,629 - MPMX20_01703 0.67 +0.0 1,802,629 - MPMX20_01703 0.67 +0.6 1,802,640 + MPMX20_01703 0.68 -0.2 1,802,648 + MPMX20_01703 0.69 +0.2 1,802,648 + MPMX20_01703 0.69 +2.2 1,802,656 - MPMX20_01703 0.69 -2.3 1,802,658 + MPMX20_01703 0.69 +1.6 1,802,658 + MPMX20_01703 0.69 -0.6 1,802,666 - MPMX20_01703 0.70 +2.1 1,802,725 + MPMX20_01703 0.74 +1.0 1,802,733 - MPMX20_01703 0.74 -0.5 1,802,739 + MPMX20_01703 0.75 +1.7 1,802,820 - MPMX20_01703 0.80 -0.1 1,802,948 + MPMX20_01703 0.88 +0.2 1,802,958 + MPMX20_01703 0.89 +0.5 1,802,966 - MPMX20_01703 0.90 +1.1 1,803,033 - +0.9 1,803,080 + -0.9 1,803,082 + -0.8 1,803,082 + +1.1 1,803,082 + -2.4 1,803,087 + -1.6 1,803,090 - -1.0 1,803,090 - -2.3 1,803,090 - +0.3 1,803,107 - -0.7 1,803,145 + -1.0 1,803,145 + -0.2 1,803,153 - -1.0 1,803,153 - -1.8 1,803,211 + +1.1 1,803,219 - -1.5 1,803,219 - +0.5 1,803,262 - -0.5 1,803,297 - MPMX20_01704 0.14 -0.2 1,803,315 + MPMX20_01704 0.19 -2.0 1,803,406 + MPMX20_01704 0.40 -3.7 1,803,454 + MPMX20_01704 0.52 -0.1 1,803,534 - MPMX20_01704 0.71 -0.1 1,803,542 + MPMX20_01704 0.73 -1.6 1,803,619 - -1.1 1,803,628 - -1.0 1,803,633 + +0.6 1,803,643 - -0.8 1,803,643 - -2.3 1,803,694 + -0.1 1,803,728 + -2.2 1,803,733 + +2.3 1,803,741 + +0.0 1,803,749 - -1.5 1,803,774 + +0.7 1,803,774 + -0.4 1,803,782 - +0.5 1,803,790 - -0.1 1,803,798 + -0.5 1,803,838 - MPMX20_01705 0.13 -1.7 1,803,851 - MPMX20_01705 0.14 -0.3 1,803,887 + MPMX20_01705 0.17 +0.7 1,803,887 + MPMX20_01705 0.17 +0.7 1,803,887 + MPMX20_01705 0.17 +0.8 1,803,887 + MPMX20_01705 0.17 +1.0 1,803,887 + MPMX20_01705 0.17 -1.7 1,803,887 + MPMX20_01705 0.17 -1.1 1,803,887 + MPMX20_01705 0.17 -2.3 1,803,887 + MPMX20_01705 0.17 -0.5 1,803,887 + MPMX20_01705 0.17 +4.3 1,803,887 + MPMX20_01705 0.17 +0.6 1,803,887 + MPMX20_01705 0.17 -2.1 1,803,887 + MPMX20_01705 0.17 -1.0 1,803,887 + MPMX20_01705 0.17 +1.0 1,803,887 + MPMX20_01705 0.17 -1.7 1,803,887 + MPMX20_01705 0.17 -0.4 1,803,887 + MPMX20_01705 0.17 +1.6 1,803,887 + MPMX20_01705 0.17 -0.4 1,803,887 + MPMX20_01705 0.17 -0.1 1,803,895 - MPMX20_01705 0.17 -0.6 1,803,895 - MPMX20_01705 0.17 -0.3 1,803,895 - MPMX20_01705 0.17 -0.9 1,803,895 - MPMX20_01705 0.17 +0.1 1,803,910 + MPMX20_01705 0.19 -2.8 1,803,910 + MPMX20_01705 0.19 +1.8 1,803,910 + MPMX20_01705 0.19 -1.0 1,803,910 + MPMX20_01705 0.19 +0.7 1,803,951 - MPMX20_01705 0.22 +2.8 1,803,952 + MPMX20_01705 0.22 -1.0 1,803,952 + MPMX20_01705 0.22 +0.2 1,803,952 + MPMX20_01705 0.22 -1.2 1,803,952 + MPMX20_01705 0.22 -1.0 1,803,952 + MPMX20_01705 0.22 -2.5 1,803,952 + MPMX20_01705 0.22 -1.6 1,803,952 + MPMX20_01705 0.22 +0.2 1,803,952 + MPMX20_01705 0.22 +0.1 1,803,952 + MPMX20_01705 0.22 -1.6 1,803,952 + MPMX20_01705 0.22 -1.3 1,803,952 + MPMX20_01705 0.22 -2.4 1,803,960 - MPMX20_01705 0.23 -2.7 1,803,960 - MPMX20_01705 0.23 -0.5 1,803,960 - MPMX20_01705 0.23 -2.1 1,803,980 + MPMX20_01705 0.25 -0.7 1,803,985 + MPMX20_01705 0.25 +0.2 1,803,985 + MPMX20_01705 0.25 +0.7 1,803,985 + MPMX20_01705 0.25 -0.2 1,803,985 + MPMX20_01705 0.25 +0.0 1,803,985 + MPMX20_01705 0.25 -1.6 1,803,985 + MPMX20_01705 0.25 +0.6 1,803,985 + MPMX20_01705 0.25 -2.1 1,803,985 + MPMX20_01705 0.25 -0.9 1,803,987 + MPMX20_01705 0.25 -1.9 1,803,993 + MPMX20_01705 0.26 -3.0 1,803,993 - MPMX20_01705 0.26 +0.8 1,803,993 - MPMX20_01705 0.26 -0.1 1,803,993 - MPMX20_01705 0.26 -1.5 1,803,993 - MPMX20_01705 0.26 -1.4 1,803,999 + MPMX20_01705 0.26 -0.6 1,804,004 + MPMX20_01705 0.27 -1.7 1,804,025 + MPMX20_01705 0.28 -0.6 1,804,025 + MPMX20_01705 0.28 -0.4 1,804,025 + MPMX20_01705 0.28 +0.5 1,804,025 + MPMX20_01705 0.28 -3.5 1,804,025 + MPMX20_01705 0.28 +0.2 1,804,033 - MPMX20_01705 0.29 +1.1 1,804,033 - MPMX20_01705 0.29 +0.4 1,804,033 - MPMX20_01705 0.29 -2.3 1,804,034 - MPMX20_01705 0.29 +1.7 1,804,057 + MPMX20_01705 0.31 -0.3 1,804,061 + MPMX20_01705 0.31 +0.0 1,804,061 + MPMX20_01705 0.31 -1.0 1,804,061 + MPMX20_01705 0.31 -2.0 1,804,065 - MPMX20_01705 0.32 -1.0 1,804,080 + MPMX20_01705 0.33 -0.4 1,804,115 - MPMX20_01705 0.36 -1.4
Or see this region's nucleotide sequence