Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04729 and MPMX20_04730 are separated by 69 nucleotides MPMX20_04730 and MPMX20_04731 are separated by 52 nucleotides
MPMX20_04729: MPMX20_04729 - Nucleoid occlusion protein, at 76,852 to 78,849
_04729
MPMX20_04730: MPMX20_04730 - hypothetical protein, at 78,919 to 79,161
_04730
MPMX20_04731: MPMX20_04731 - Plasmid-derived single-stranded DNA-binding protein, at 79,214 to 79,771
_04731
Position (kb) 78
79
80 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 77.924 kb on + strand, within MPMX20_04729 at 77.925 kb on - strand, within MPMX20_04729 at 77.932 kb on - strand, within MPMX20_04729 at 77.933 kb on - strand, within MPMX20_04729 at 77.937 kb on - strand, within MPMX20_04729 at 77.994 kb on - strand, within MPMX20_04729 at 77.995 kb on + strand, within MPMX20_04729 at 78.008 kb on - strand, within MPMX20_04729 at 78.043 kb on + strand, within MPMX20_04729 at 78.043 kb on + strand, within MPMX20_04729 at 78.045 kb on + strand, within MPMX20_04729 at 78.049 kb on - strand, within MPMX20_04729 at 78.050 kb on + strand, within MPMX20_04729 at 78.051 kb on - strand, within MPMX20_04729 at 78.053 kb on - strand, within MPMX20_04729 at 78.053 kb on - strand, within MPMX20_04729 at 78.082 kb on + strand, within MPMX20_04729 at 78.086 kb on + strand, within MPMX20_04729 at 78.088 kb on + strand, within MPMX20_04729 at 78.088 kb on + strand, within MPMX20_04729 at 78.088 kb on + strand, within MPMX20_04729 at 78.096 kb on - strand, within MPMX20_04729 at 78.145 kb on + strand, within MPMX20_04729 at 78.171 kb on + strand, within MPMX20_04729 at 78.179 kb on - strand, within MPMX20_04729 at 78.182 kb on + strand, within MPMX20_04729 at 78.185 kb on - strand, within MPMX20_04729 at 78.185 kb on - strand, within MPMX20_04729 at 78.185 kb on - strand, within MPMX20_04729 at 78.185 kb on - strand, within MPMX20_04729 at 78.190 kb on - strand, within MPMX20_04729 at 78.195 kb on + strand, within MPMX20_04729 at 78.207 kb on + strand, within MPMX20_04729 at 78.207 kb on + strand, within MPMX20_04729 at 78.215 kb on - strand, within MPMX20_04729 at 78.215 kb on - strand, within MPMX20_04729 at 78.251 kb on + strand, within MPMX20_04729 at 78.257 kb on - strand, within MPMX20_04729 at 78.259 kb on - strand, within MPMX20_04729 at 78.261 kb on + strand, within MPMX20_04729 at 78.261 kb on + strand, within MPMX20_04729 at 78.261 kb on + strand, within MPMX20_04729 at 78.269 kb on - strand, within MPMX20_04729 at 78.269 kb on - strand, within MPMX20_04729 at 78.269 kb on - strand, within MPMX20_04729 at 78.269 kb on - strand, within MPMX20_04729 at 78.350 kb on + strand, within MPMX20_04729 at 78.353 kb on + strand, within MPMX20_04729 at 78.383 kb on + strand, within MPMX20_04729 at 78.383 kb on + strand, within MPMX20_04729 at 78.383 kb on + strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.391 kb on - strand, within MPMX20_04729 at 78.393 kb on + strand, within MPMX20_04729 at 78.400 kb on - strand, within MPMX20_04729 at 78.421 kb on - strand, within MPMX20_04729 at 78.469 kb on + strand, within MPMX20_04729 at 78.550 kb on + strand, within MPMX20_04729 at 78.565 kb on - strand, within MPMX20_04729 at 78.589 kb on + strand, within MPMX20_04729 at 78.650 kb on + strand at 78.657 kb on - strand at 78.673 kb on - strand at 78.692 kb on + strand at 78.692 kb on + strand at 78.700 kb on - strand at 78.705 kb on + strand at 78.710 kb on + strand at 78.710 kb on + strand at 78.710 kb on + strand at 78.718 kb on - strand at 78.718 kb on - strand at 78.764 kb on + strand at 78.772 kb on - strand at 78.772 kb on - strand at 78.828 kb on - strand at 78.843 kb on + strand at 78.851 kb on + strand at 78.851 kb on + strand at 78.859 kb on - strand at 78.859 kb on - strand at 78.873 kb on - strand at 78.885 kb on - strand at 78.887 kb on - strand at 78.887 kb on - strand at 78.887 kb on - strand at 78.914 kb on + strand at 78.946 kb on - strand, within MPMX20_04730 at 78.998 kb on + strand, within MPMX20_04730 at 79.078 kb on - strand, within MPMX20_04730 at 79.080 kb on + strand, within MPMX20_04730 at 79.091 kb on + strand, within MPMX20_04730 at 79.091 kb on + strand, within MPMX20_04730 at 79.091 kb on + strand, within MPMX20_04730 at 79.091 kb on + strand, within MPMX20_04730 at 79.091 kb on + strand, within MPMX20_04730 at 79.099 kb on - strand, within MPMX20_04730 at 79.099 kb on - strand, within MPMX20_04730 at 79.099 kb on - strand, within MPMX20_04730 at 79.099 kb on - strand, within MPMX20_04730 at 79.138 kb on - strand at 79.143 kb on + strand at 79.143 kb on + strand at 79.143 kb on + strand at 79.143 kb on + strand at 79.151 kb on - strand at 79.212 kb on + strand at 79.212 kb on + strand at 79.212 kb on + strand at 79.212 kb on + strand at 79.212 kb on + strand at 79.220 kb on - strand at 79.220 kb on - strand at 79.220 kb on - strand at 79.227 kb on + strand at 79.289 kb on + strand, within MPMX20_04731 at 79.318 kb on - strand, within MPMX20_04731 at 79.387 kb on + strand, within MPMX20_04731 at 79.396 kb on - strand, within MPMX20_04731 at 79.401 kb on + strand, within MPMX20_04731 at 79.401 kb on + strand, within MPMX20_04731 at 79.403 kb on - strand, within MPMX20_04731 at 79.431 kb on + strand, within MPMX20_04731 at 79.431 kb on + strand, within MPMX20_04731 at 79.446 kb on + strand, within MPMX20_04731 at 79.446 kb on + strand, within MPMX20_04731 at 79.459 kb on - strand, within MPMX20_04731 at 79.528 kb on - strand, within MPMX20_04731 at 79.541 kb on + strand, within MPMX20_04731 at 79.558 kb on + strand, within MPMX20_04731 at 79.581 kb on + strand, within MPMX20_04731 at 79.583 kb on - strand, within MPMX20_04731 at 79.594 kb on + strand, within MPMX20_04731 at 79.595 kb on - strand, within MPMX20_04731 at 79.635 kb on - strand, within MPMX20_04731 at 79.661 kb on - strand, within MPMX20_04731 at 79.662 kb on - strand, within MPMX20_04731 at 79.662 kb on - strand, within MPMX20_04731 at 79.687 kb on - strand, within MPMX20_04731 at 79.691 kb on + strand, within MPMX20_04731 at 79.701 kb on - strand, within MPMX20_04731 at 79.747 kb on - strand at 79.767 kb on + strand at 79.767 kb on + strand at 79.821 kb on - strand at 79.822 kb on - strand at 79.836 kb on + strand at 79.844 kb on - strand at 79.900 kb on - strand at 79.900 kb on - strand at 79.915 kb on + strand at 79.915 kb on + strand at 79.922 kb on - strand at 79.923 kb on - strand at 79.923 kb on - strand at 79.923 kb on - strand at 79.923 kb on - strand at 79.923 kb on - strand at 79.943 kb on + strand at 79.968 kb on + strand at 79.973 kb on + strand at 79.973 kb on + strand at 79.976 kb on - strand at 79.983 kb on + strand at 80.096 kb on + strand at 80.106 kb on + strand at 80.147 kb on + strand at 80.155 kb on - strand at 80.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 77,924 + MPMX20_04729 0.54 +0.6 77,925 - MPMX20_04729 0.54 -0.8 77,932 - MPMX20_04729 0.54 -3.6 77,933 - MPMX20_04729 0.54 +0.2 77,937 - MPMX20_04729 0.54 -0.9 77,994 - MPMX20_04729 0.57 +1.0 77,995 + MPMX20_04729 0.57 -0.8 78,008 - MPMX20_04729 0.58 +1.0 78,043 + MPMX20_04729 0.60 +1.4 78,043 + MPMX20_04729 0.60 -1.3 78,045 + MPMX20_04729 0.60 -0.7 78,049 - MPMX20_04729 0.60 +0.0 78,050 + MPMX20_04729 0.60 +0.4 78,051 - MPMX20_04729 0.60 +0.0 78,053 - MPMX20_04729 0.60 -1.5 78,053 - MPMX20_04729 0.60 -1.9 78,082 + MPMX20_04729 0.62 -2.2 78,086 + MPMX20_04729 0.62 +0.4 78,088 + MPMX20_04729 0.62 +0.4 78,088 + MPMX20_04729 0.62 -0.0 78,088 + MPMX20_04729 0.62 -2.3 78,096 - MPMX20_04729 0.62 +0.6 78,145 + MPMX20_04729 0.65 +0.3 78,171 + MPMX20_04729 0.66 -0.5 78,179 - MPMX20_04729 0.66 +3.6 78,182 + MPMX20_04729 0.67 -1.5 78,185 - MPMX20_04729 0.67 -1.6 78,185 - MPMX20_04729 0.67 -1.7 78,185 - MPMX20_04729 0.67 -1.8 78,185 - MPMX20_04729 0.67 -3.5 78,190 - MPMX20_04729 0.67 +0.4 78,195 + MPMX20_04729 0.67 -1.1 78,207 + MPMX20_04729 0.68 +1.2 78,207 + MPMX20_04729 0.68 +1.1 78,215 - MPMX20_04729 0.68 -0.0 78,215 - MPMX20_04729 0.68 -1.2 78,251 + MPMX20_04729 0.70 +1.0 78,257 - MPMX20_04729 0.70 -2.7 78,259 - MPMX20_04729 0.70 -1.7 78,261 + MPMX20_04729 0.71 -1.0 78,261 + MPMX20_04729 0.71 +0.6 78,261 + MPMX20_04729 0.71 +1.0 78,269 - MPMX20_04729 0.71 -2.2 78,269 - MPMX20_04729 0.71 -1.9 78,269 - MPMX20_04729 0.71 -2.2 78,269 - MPMX20_04729 0.71 -0.7 78,350 + MPMX20_04729 0.75 +3.3 78,353 + MPMX20_04729 0.75 +1.4 78,383 + MPMX20_04729 0.77 -0.9 78,383 + MPMX20_04729 0.77 -0.9 78,383 + MPMX20_04729 0.77 -0.6 78,391 - MPMX20_04729 0.77 -2.8 78,391 - MPMX20_04729 0.77 -2.7 78,391 - MPMX20_04729 0.77 -1.2 78,391 - MPMX20_04729 0.77 -0.0 78,391 - MPMX20_04729 0.77 +0.0 78,391 - MPMX20_04729 0.77 +0.2 78,391 - MPMX20_04729 0.77 -3.0 78,393 + MPMX20_04729 0.77 -1.7 78,400 - MPMX20_04729 0.77 +1.0 78,421 - MPMX20_04729 0.79 -0.3 78,469 + MPMX20_04729 0.81 -0.8 78,550 + MPMX20_04729 0.85 -1.0 78,565 - MPMX20_04729 0.86 -0.4 78,589 + MPMX20_04729 0.87 +0.2 78,650 + -0.7 78,657 - -0.9 78,673 - -0.5 78,692 + -0.7 78,692 + -0.0 78,700 - -1.0 78,705 + +0.4 78,710 + -1.7 78,710 + -1.7 78,710 + -0.2 78,718 - +4.3 78,718 - -1.4 78,764 + +2.1 78,772 - -0.8 78,772 - +0.2 78,828 - -1.6 78,843 + +1.2 78,851 + -2.2 78,851 + -2.5 78,859 - -2.4 78,859 - -2.0 78,873 - -2.4 78,885 - -0.1 78,887 - -2.6 78,887 - -1.9 78,887 - -3.4 78,914 + +0.8 78,946 - MPMX20_04730 0.11 -2.1 78,998 + MPMX20_04730 0.33 -2.0 79,078 - MPMX20_04730 0.65 -3.4 79,080 + MPMX20_04730 0.66 -2.9 79,091 + MPMX20_04730 0.71 -1.6 79,091 + MPMX20_04730 0.71 -3.9 79,091 + MPMX20_04730 0.71 -2.1 79,091 + MPMX20_04730 0.71 +0.7 79,091 + MPMX20_04730 0.71 -0.5 79,099 - MPMX20_04730 0.74 -3.1 79,099 - MPMX20_04730 0.74 -5.1 79,099 - MPMX20_04730 0.74 -2.5 79,099 - MPMX20_04730 0.74 -2.2 79,138 - -4.2 79,143 + +2.1 79,143 + -0.4 79,143 + -1.5 79,143 + -0.6 79,151 - -2.6 79,212 + -2.9 79,212 + +0.2 79,212 + -0.5 79,212 + -3.1 79,212 + -3.2 79,220 - -4.5 79,220 - -3.3 79,220 - -1.3 79,227 + -0.4 79,289 + MPMX20_04731 0.13 -0.4 79,318 - MPMX20_04731 0.19 -4.2 79,387 + MPMX20_04731 0.31 -0.7 79,396 - MPMX20_04731 0.33 -2.0 79,401 + MPMX20_04731 0.34 +0.4 79,401 + MPMX20_04731 0.34 -0.1 79,403 - MPMX20_04731 0.34 -2.8 79,431 + MPMX20_04731 0.39 -0.3 79,431 + MPMX20_04731 0.39 -4.4 79,446 + MPMX20_04731 0.42 -1.8 79,446 + MPMX20_04731 0.42 -2.2 79,459 - MPMX20_04731 0.44 -4.7 79,528 - MPMX20_04731 0.56 -2.3 79,541 + MPMX20_04731 0.59 -1.0 79,558 + MPMX20_04731 0.62 -1.9 79,581 + MPMX20_04731 0.66 -0.9 79,583 - MPMX20_04731 0.66 -0.6 79,594 + MPMX20_04731 0.68 +0.3 79,595 - MPMX20_04731 0.68 -4.2 79,635 - MPMX20_04731 0.75 -3.1 79,661 - MPMX20_04731 0.80 -5.8 79,662 - MPMX20_04731 0.80 -0.0 79,662 - MPMX20_04731 0.80 -1.6 79,687 - MPMX20_04731 0.85 -1.1 79,691 + MPMX20_04731 0.85 +1.4 79,701 - MPMX20_04731 0.87 -3.3 79,747 - -6.3 79,767 + +0.8 79,767 + -0.5 79,821 - -2.4 79,822 - -1.0 79,836 + -1.3 79,844 - -3.3 79,900 - -2.3 79,900 - -3.7 79,915 + -2.0 79,915 + -0.0 79,922 - -2.3 79,923 - -0.2 79,923 - -1.9 79,923 - -5.4 79,923 - -3.0 79,923 - -0.8 79,943 + -1.6 79,968 + +0.7 79,973 + -1.6 79,973 + -0.5 79,976 - -4.1 79,983 + +1.2 80,096 + -1.2 80,106 + +0.1 80,147 + -2.2 80,155 - -4.2 80,155 - -2.9
Or see this region's nucleotide sequence