Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04518

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04516 and MPMX20_04517 are separated by 9 nucleotidesMPMX20_04517 and MPMX20_04518 are separated by 196 nucleotidesMPMX20_04518 and MPMX20_04519 overlap by 18 nucleotides MPMX20_04516: MPMX20_04516 - Inner membrane protein YijD, at 4,724,331 to 4,724,690 _04516 MPMX20_04517: MPMX20_04517 - HTH-type transcriptional repressor FabR, at 4,724,700 to 4,725,338 _04517 MPMX20_04518: MPMX20_04518 - Soluble pyridine nucleotide transhydrogenase, at 4,725,535 to 4,726,935 _04518 MPMX20_04519: MPMX20_04519 - Hydrogen peroxide-inducible genes activator, at 4,726,918 to 4,727,835 _04519 Position (kb) 4725 4726 4727Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4724.537 kb on + strand, within MPMX20_04516at 4724.537 kb on + strand, within MPMX20_04516at 4724.545 kb on - strand, within MPMX20_04516at 4724.547 kb on + strand, within MPMX20_04516at 4724.550 kb on - strand, within MPMX20_04516at 4724.553 kb on - strand, within MPMX20_04516at 4724.554 kb on + strand, within MPMX20_04516at 4724.562 kb on - strand, within MPMX20_04516at 4724.659 kb on + strandat 4724.660 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.665 kb on + strandat 4724.667 kb on - strandat 4724.670 kb on + strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.673 kb on - strandat 4724.678 kb on - strandat 4724.690 kb on + strandat 4724.705 kb on - strandat 4724.751 kb on - strandat 4724.758 kb on + strandat 4724.758 kb on + strandat 4724.770 kb on + strand, within MPMX20_04517at 4724.778 kb on - strand, within MPMX20_04517at 4724.877 kb on - strand, within MPMX20_04517at 4724.877 kb on - strand, within MPMX20_04517at 4724.896 kb on + strand, within MPMX20_04517at 4725.067 kb on - strand, within MPMX20_04517at 4725.067 kb on - strand, within MPMX20_04517at 4725.136 kb on - strand, within MPMX20_04517at 4725.141 kb on + strand, within MPMX20_04517at 4725.149 kb on - strand, within MPMX20_04517at 4725.154 kb on + strand, within MPMX20_04517at 4725.156 kb on - strand, within MPMX20_04517at 4725.162 kb on - strand, within MPMX20_04517at 4725.234 kb on - strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.236 kb on + strand, within MPMX20_04517at 4725.244 kb on - strand, within MPMX20_04517at 4725.244 kb on - strand, within MPMX20_04517at 4725.244 kb on - strand, within MPMX20_04517at 4725.244 kb on - strand, within MPMX20_04517at 4725.244 kb on - strand, within MPMX20_04517at 4725.262 kb on + strand, within MPMX20_04517at 4725.262 kb on + strand, within MPMX20_04517at 4725.262 kb on + strand, within MPMX20_04517at 4725.270 kb on - strand, within MPMX20_04517at 4725.359 kb on + strandat 4725.367 kb on - strandat 4725.438 kb on - strandat 4725.527 kb on + strandat 4725.535 kb on - strandat 4725.592 kb on + strandat 4725.626 kb on + strandat 4725.647 kb on + strandat 4725.665 kb on + strandat 4725.759 kb on + strand, within MPMX20_04518at 4725.842 kb on + strand, within MPMX20_04518at 4725.850 kb on - strand, within MPMX20_04518at 4725.852 kb on + strand, within MPMX20_04518at 4725.876 kb on + strand, within MPMX20_04518at 4725.895 kb on + strand, within MPMX20_04518at 4725.982 kb on - strand, within MPMX20_04518at 4726.007 kb on + strand, within MPMX20_04518at 4726.015 kb on - strand, within MPMX20_04518at 4726.015 kb on - strand, within MPMX20_04518at 4726.154 kb on - strand, within MPMX20_04518at 4726.198 kb on - strand, within MPMX20_04518at 4726.198 kb on - strand, within MPMX20_04518at 4726.350 kb on + strand, within MPMX20_04518at 4726.418 kb on - strand, within MPMX20_04518at 4726.432 kb on - strand, within MPMX20_04518at 4726.436 kb on - strand, within MPMX20_04518at 4726.438 kb on + strand, within MPMX20_04518at 4726.478 kb on + strand, within MPMX20_04518at 4726.533 kb on + strand, within MPMX20_04518at 4726.541 kb on - strand, within MPMX20_04518at 4726.541 kb on - strand, within MPMX20_04518at 4726.550 kb on + strand, within MPMX20_04518at 4726.558 kb on - strand, within MPMX20_04518at 4726.588 kb on - strand, within MPMX20_04518at 4726.678 kb on - strand, within MPMX20_04518at 4726.843 kb on + strandat 4726.884 kb on + strandat 4726.937 kb on - strandat 4727.018 kb on + strand, within MPMX20_04519at 4727.026 kb on - strand, within MPMX20_04519at 4727.028 kb on + strand, within MPMX20_04519at 4727.028 kb on + strand, within MPMX20_04519at 4727.036 kb on - strand, within MPMX20_04519at 4727.051 kb on + strand, within MPMX20_04519at 4727.059 kb on - strand, within MPMX20_04519at 4727.059 kb on - strand, within MPMX20_04519at 4727.067 kb on + strand, within MPMX20_04519at 4727.347 kb on - strand, within MPMX20_04519at 4727.383 kb on + strand, within MPMX20_04519at 4727.384 kb on + strand, within MPMX20_04519at 4727.392 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.450 kb on - strand, within MPMX20_04519at 4727.466 kb on + strand, within MPMX20_04519at 4727.496 kb on - strand, within MPMX20_04519at 4727.512 kb on - strand, within MPMX20_04519at 4727.523 kb on + strand, within MPMX20_04519at 4727.531 kb on - strand, within MPMX20_04519at 4727.537 kb on - strand, within MPMX20_04519at 4727.547 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.607 kb on + strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.635 kb on - strand, within MPMX20_04519at 4727.742 kb on + strand, within MPMX20_04519at 4727.750 kb on - strandat 4727.820 kb on - strandat 4727.926 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,724,537 + MPMX20_04516 0.57 +2.4
4,724,537 + MPMX20_04516 0.57 -0.6
4,724,545 - MPMX20_04516 0.59 +0.4
4,724,547 + MPMX20_04516 0.60 -2.5
4,724,550 - MPMX20_04516 0.61 +0.8
4,724,553 - MPMX20_04516 0.62 -2.6
4,724,554 + MPMX20_04516 0.62 -2.2
4,724,562 - MPMX20_04516 0.64 +0.4
4,724,659 + +0.9
4,724,660 + -2.1
4,724,665 + -0.8
4,724,665 + +1.0
4,724,665 + -0.6
4,724,665 + -1.4
4,724,665 + +0.1
4,724,665 + +0.1
4,724,665 + +1.4
4,724,667 - -0.3
4,724,670 + +2.4
4,724,673 - +2.4
4,724,673 - -2.1
4,724,673 - +0.2
4,724,673 - -1.9
4,724,673 - -1.1
4,724,673 - -0.9
4,724,673 - -0.6
4,724,673 - +0.8
4,724,673 - +1.3
4,724,678 - -2.5
4,724,690 + +1.1
4,724,705 - +0.8
4,724,751 - -1.4
4,724,758 + +0.8
4,724,758 + -2.8
4,724,770 + MPMX20_04517 0.11 -1.2
4,724,778 - MPMX20_04517 0.12 -1.3
4,724,877 - MPMX20_04517 0.28 +4.0
4,724,877 - MPMX20_04517 0.28 -0.2
4,724,896 + MPMX20_04517 0.31 +0.4
4,725,067 - MPMX20_04517 0.57 +2.2
4,725,067 - MPMX20_04517 0.57 +0.7
4,725,136 - MPMX20_04517 0.68 -1.1
4,725,141 + MPMX20_04517 0.69 -0.8
4,725,149 - MPMX20_04517 0.70 +0.1
4,725,154 + MPMX20_04517 0.71 +0.8
4,725,156 - MPMX20_04517 0.71 +1.3
4,725,162 - MPMX20_04517 0.72 +1.6
4,725,234 - MPMX20_04517 0.84 +0.1
4,725,236 + MPMX20_04517 0.84 -0.2
4,725,236 + MPMX20_04517 0.84 +0.1
4,725,236 + MPMX20_04517 0.84 +1.8
4,725,236 + MPMX20_04517 0.84 +1.4
4,725,236 + MPMX20_04517 0.84 -0.6
4,725,236 + MPMX20_04517 0.84 +0.4
4,725,236 + MPMX20_04517 0.84 -0.2
4,725,236 + MPMX20_04517 0.84 -0.8
4,725,244 - MPMX20_04517 0.85 -0.2
4,725,244 - MPMX20_04517 0.85 -0.9
4,725,244 - MPMX20_04517 0.85 +1.1
4,725,244 - MPMX20_04517 0.85 +2.4
4,725,244 - MPMX20_04517 0.85 -1.9
4,725,262 + MPMX20_04517 0.88 +2.7
4,725,262 + MPMX20_04517 0.88 +2.2
4,725,262 + MPMX20_04517 0.88 +1.4
4,725,270 - MPMX20_04517 0.89 +1.1
4,725,359 + +0.9
4,725,367 - +0.1
4,725,438 - +0.2
4,725,527 + -1.7
4,725,535 - -2.4
4,725,592 + +1.4
4,725,626 + -1.4
4,725,647 + -0.9
4,725,665 + -1.3
4,725,759 + MPMX20_04518 0.16 -1.7
4,725,842 + MPMX20_04518 0.22 +1.5
4,725,850 - MPMX20_04518 0.22 +2.4
4,725,852 + MPMX20_04518 0.23 +1.4
4,725,876 + MPMX20_04518 0.24 +2.4
4,725,895 + MPMX20_04518 0.26 -1.5
4,725,982 - MPMX20_04518 0.32 -2.1
4,726,007 + MPMX20_04518 0.34 -2.3
4,726,015 - MPMX20_04518 0.34 -2.3
4,726,015 - MPMX20_04518 0.34 +3.4
4,726,154 - MPMX20_04518 0.44 -0.4
4,726,198 - MPMX20_04518 0.47 -2.4
4,726,198 - MPMX20_04518 0.47 -1.2
4,726,350 + MPMX20_04518 0.58 -2.5
4,726,418 - MPMX20_04518 0.63 -1.3
4,726,432 - MPMX20_04518 0.64 -0.4
4,726,436 - MPMX20_04518 0.64 +0.8
4,726,438 + MPMX20_04518 0.64 +0.5
4,726,478 + MPMX20_04518 0.67 -1.4
4,726,533 + MPMX20_04518 0.71 +0.8
4,726,541 - MPMX20_04518 0.72 -1.3
4,726,541 - MPMX20_04518 0.72 -0.6
4,726,550 + MPMX20_04518 0.72 -2.1
4,726,558 - MPMX20_04518 0.73 -1.1
4,726,588 - MPMX20_04518 0.75 -0.2
4,726,678 - MPMX20_04518 0.82 -2.1
4,726,843 + -2.4
4,726,884 + +0.1
4,726,937 - -1.9
4,727,018 + MPMX20_04519 0.11 -0.2
4,727,026 - MPMX20_04519 0.12 -0.2
4,727,028 + MPMX20_04519 0.12 +0.4
4,727,028 + MPMX20_04519 0.12 +3.3
4,727,036 - MPMX20_04519 0.13 +0.4
4,727,051 + MPMX20_04519 0.14 -0.7
4,727,059 - MPMX20_04519 0.15 +1.0
4,727,059 - MPMX20_04519 0.15 +0.1
4,727,067 + MPMX20_04519 0.16 +0.1
4,727,347 - MPMX20_04519 0.47 -0.6
4,727,383 + MPMX20_04519 0.51 -1.2
4,727,384 + MPMX20_04519 0.51 -0.1
4,727,392 - MPMX20_04519 0.52 -1.4
4,727,450 - MPMX20_04519 0.58 +2.1
4,727,450 - MPMX20_04519 0.58 +2.2
4,727,466 + MPMX20_04519 0.60 +0.1
4,727,496 - MPMX20_04519 0.63 -1.2
4,727,512 - MPMX20_04519 0.65 -2.4
4,727,523 + MPMX20_04519 0.66 +0.1
4,727,531 - MPMX20_04519 0.67 -3.9
4,727,537 - MPMX20_04519 0.67 +2.5
4,727,547 + MPMX20_04519 0.69 +0.4
4,727,607 + MPMX20_04519 0.75 -1.5
4,727,607 + MPMX20_04519 0.75 +0.6
4,727,635 - MPMX20_04519 0.78 -0.9
4,727,635 - MPMX20_04519 0.78 -1.4
4,727,742 + MPMX20_04519 0.90 +1.8
4,727,750 - +0.8
4,727,820 - -0.6
4,727,926 + -2.3

Or see this region's nucleotide sequence