Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04516 and MPMX20_04517 are separated by 9 nucleotides MPMX20_04517 and MPMX20_04518 are separated by 196 nucleotides MPMX20_04518 and MPMX20_04519 overlap by 18 nucleotides
MPMX20_04516: MPMX20_04516 - Inner membrane protein YijD, at 4,724,331 to 4,724,690
_04516
MPMX20_04517: MPMX20_04517 - HTH-type transcriptional repressor FabR, at 4,724,700 to 4,725,338
_04517
MPMX20_04518: MPMX20_04518 - Soluble pyridine nucleotide transhydrogenase, at 4,725,535 to 4,726,935
_04518
MPMX20_04519: MPMX20_04519 - Hydrogen peroxide-inducible genes activator, at 4,726,918 to 4,727,835
_04519
Position (kb)
4725
4726
4727 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4724.537 kb on + strand, within MPMX20_04516 at 4724.537 kb on + strand, within MPMX20_04516 at 4724.545 kb on - strand, within MPMX20_04516 at 4724.547 kb on + strand, within MPMX20_04516 at 4724.550 kb on - strand, within MPMX20_04516 at 4724.553 kb on - strand, within MPMX20_04516 at 4724.554 kb on + strand, within MPMX20_04516 at 4724.562 kb on - strand, within MPMX20_04516 at 4724.659 kb on + strand at 4724.660 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.665 kb on + strand at 4724.667 kb on - strand at 4724.670 kb on + strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.673 kb on - strand at 4724.678 kb on - strand at 4724.690 kb on + strand at 4724.705 kb on - strand at 4724.751 kb on - strand at 4724.758 kb on + strand at 4724.758 kb on + strand at 4724.770 kb on + strand, within MPMX20_04517 at 4724.778 kb on - strand, within MPMX20_04517 at 4724.877 kb on - strand, within MPMX20_04517 at 4724.877 kb on - strand, within MPMX20_04517 at 4724.896 kb on + strand, within MPMX20_04517 at 4725.067 kb on - strand, within MPMX20_04517 at 4725.067 kb on - strand, within MPMX20_04517 at 4725.136 kb on - strand, within MPMX20_04517 at 4725.141 kb on + strand, within MPMX20_04517 at 4725.149 kb on - strand, within MPMX20_04517 at 4725.154 kb on + strand, within MPMX20_04517 at 4725.156 kb on - strand, within MPMX20_04517 at 4725.162 kb on - strand, within MPMX20_04517 at 4725.234 kb on - strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.236 kb on + strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.244 kb on - strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.262 kb on + strand, within MPMX20_04517 at 4725.270 kb on - strand, within MPMX20_04517 at 4725.359 kb on + strand at 4725.367 kb on - strand at 4725.438 kb on - strand at 4725.527 kb on + strand at 4725.535 kb on - strand at 4725.592 kb on + strand at 4725.626 kb on + strand at 4725.647 kb on + strand at 4725.665 kb on + strand at 4725.759 kb on + strand, within MPMX20_04518 at 4725.842 kb on + strand, within MPMX20_04518 at 4725.850 kb on - strand, within MPMX20_04518 at 4725.852 kb on + strand, within MPMX20_04518 at 4725.876 kb on + strand, within MPMX20_04518 at 4725.895 kb on + strand, within MPMX20_04518 at 4725.982 kb on - strand, within MPMX20_04518 at 4726.007 kb on + strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.015 kb on - strand, within MPMX20_04518 at 4726.154 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518 at 4726.198 kb on - strand, within MPMX20_04518 at 4726.350 kb on + strand, within MPMX20_04518 at 4726.418 kb on - strand, within MPMX20_04518 at 4726.432 kb on - strand, within MPMX20_04518 at 4726.436 kb on - strand, within MPMX20_04518 at 4726.438 kb on + strand, within MPMX20_04518 at 4726.478 kb on + strand, within MPMX20_04518 at 4726.533 kb on + strand, within MPMX20_04518 at 4726.541 kb on - strand, within MPMX20_04518 at 4726.541 kb on - strand, within MPMX20_04518 at 4726.550 kb on + strand, within MPMX20_04518 at 4726.558 kb on - strand, within MPMX20_04518 at 4726.588 kb on - strand, within MPMX20_04518 at 4726.678 kb on - strand, within MPMX20_04518 at 4726.843 kb on + strand at 4726.884 kb on + strand at 4726.937 kb on - strand at 4727.018 kb on + strand, within MPMX20_04519 at 4727.026 kb on - strand, within MPMX20_04519 at 4727.028 kb on + strand, within MPMX20_04519 at 4727.028 kb on + strand, within MPMX20_04519 at 4727.036 kb on - strand, within MPMX20_04519 at 4727.051 kb on + strand, within MPMX20_04519 at 4727.059 kb on - strand, within MPMX20_04519 at 4727.059 kb on - strand, within MPMX20_04519 at 4727.067 kb on + strand, within MPMX20_04519 at 4727.347 kb on - strand, within MPMX20_04519 at 4727.383 kb on + strand, within MPMX20_04519 at 4727.384 kb on + strand, within MPMX20_04519 at 4727.392 kb on - strand, within MPMX20_04519 at 4727.450 kb on - strand, within MPMX20_04519 at 4727.450 kb on - strand, within MPMX20_04519 at 4727.466 kb on + strand, within MPMX20_04519 at 4727.496 kb on - strand, within MPMX20_04519 at 4727.512 kb on - strand, within MPMX20_04519 at 4727.523 kb on + strand, within MPMX20_04519 at 4727.531 kb on - strand, within MPMX20_04519 at 4727.537 kb on - strand, within MPMX20_04519 at 4727.547 kb on + strand, within MPMX20_04519 at 4727.607 kb on + strand, within MPMX20_04519 at 4727.607 kb on + strand, within MPMX20_04519 at 4727.635 kb on - strand, within MPMX20_04519 at 4727.635 kb on - strand, within MPMX20_04519 at 4727.742 kb on + strand, within MPMX20_04519 at 4727.750 kb on - strand at 4727.820 kb on - strand at 4727.926 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,724,537 + MPMX20_04516 0.57 +2.4 4,724,537 + MPMX20_04516 0.57 -0.6 4,724,545 - MPMX20_04516 0.59 +0.4 4,724,547 + MPMX20_04516 0.60 -2.5 4,724,550 - MPMX20_04516 0.61 +0.8 4,724,553 - MPMX20_04516 0.62 -2.6 4,724,554 + MPMX20_04516 0.62 -2.2 4,724,562 - MPMX20_04516 0.64 +0.4 4,724,659 + +0.9 4,724,660 + -2.1 4,724,665 + -0.8 4,724,665 + +1.0 4,724,665 + -0.6 4,724,665 + -1.4 4,724,665 + +0.1 4,724,665 + +0.1 4,724,665 + +1.4 4,724,667 - -0.3 4,724,670 + +2.4 4,724,673 - +2.4 4,724,673 - -2.1 4,724,673 - +0.2 4,724,673 - -1.9 4,724,673 - -1.1 4,724,673 - -0.9 4,724,673 - -0.6 4,724,673 - +0.8 4,724,673 - +1.3 4,724,678 - -2.5 4,724,690 + +1.1 4,724,705 - +0.8 4,724,751 - -1.4 4,724,758 + +0.8 4,724,758 + -2.8 4,724,770 + MPMX20_04517 0.11 -1.2 4,724,778 - MPMX20_04517 0.12 -1.3 4,724,877 - MPMX20_04517 0.28 +4.0 4,724,877 - MPMX20_04517 0.28 -0.2 4,724,896 + MPMX20_04517 0.31 +0.4 4,725,067 - MPMX20_04517 0.57 +2.2 4,725,067 - MPMX20_04517 0.57 +0.7 4,725,136 - MPMX20_04517 0.68 -1.1 4,725,141 + MPMX20_04517 0.69 -0.8 4,725,149 - MPMX20_04517 0.70 +0.1 4,725,154 + MPMX20_04517 0.71 +0.8 4,725,156 - MPMX20_04517 0.71 +1.3 4,725,162 - MPMX20_04517 0.72 +1.6 4,725,234 - MPMX20_04517 0.84 +0.1 4,725,236 + MPMX20_04517 0.84 -0.2 4,725,236 + MPMX20_04517 0.84 +0.1 4,725,236 + MPMX20_04517 0.84 +1.8 4,725,236 + MPMX20_04517 0.84 +1.4 4,725,236 + MPMX20_04517 0.84 -0.6 4,725,236 + MPMX20_04517 0.84 +0.4 4,725,236 + MPMX20_04517 0.84 -0.2 4,725,236 + MPMX20_04517 0.84 -0.8 4,725,244 - MPMX20_04517 0.85 -0.2 4,725,244 - MPMX20_04517 0.85 -0.9 4,725,244 - MPMX20_04517 0.85 +1.1 4,725,244 - MPMX20_04517 0.85 +2.4 4,725,244 - MPMX20_04517 0.85 -1.9 4,725,262 + MPMX20_04517 0.88 +2.7 4,725,262 + MPMX20_04517 0.88 +2.2 4,725,262 + MPMX20_04517 0.88 +1.4 4,725,270 - MPMX20_04517 0.89 +1.1 4,725,359 + +0.9 4,725,367 - +0.1 4,725,438 - +0.2 4,725,527 + -1.7 4,725,535 - -2.4 4,725,592 + +1.4 4,725,626 + -1.4 4,725,647 + -0.9 4,725,665 + -1.3 4,725,759 + MPMX20_04518 0.16 -1.7 4,725,842 + MPMX20_04518 0.22 +1.5 4,725,850 - MPMX20_04518 0.22 +2.4 4,725,852 + MPMX20_04518 0.23 +1.4 4,725,876 + MPMX20_04518 0.24 +2.4 4,725,895 + MPMX20_04518 0.26 -1.5 4,725,982 - MPMX20_04518 0.32 -2.1 4,726,007 + MPMX20_04518 0.34 -2.3 4,726,015 - MPMX20_04518 0.34 -2.3 4,726,015 - MPMX20_04518 0.34 +3.4 4,726,154 - MPMX20_04518 0.44 -0.4 4,726,198 - MPMX20_04518 0.47 -2.4 4,726,198 - MPMX20_04518 0.47 -1.2 4,726,350 + MPMX20_04518 0.58 -2.5 4,726,418 - MPMX20_04518 0.63 -1.3 4,726,432 - MPMX20_04518 0.64 -0.4 4,726,436 - MPMX20_04518 0.64 +0.8 4,726,438 + MPMX20_04518 0.64 +0.5 4,726,478 + MPMX20_04518 0.67 -1.4 4,726,533 + MPMX20_04518 0.71 +0.8 4,726,541 - MPMX20_04518 0.72 -1.3 4,726,541 - MPMX20_04518 0.72 -0.6 4,726,550 + MPMX20_04518 0.72 -2.1 4,726,558 - MPMX20_04518 0.73 -1.1 4,726,588 - MPMX20_04518 0.75 -0.2 4,726,678 - MPMX20_04518 0.82 -2.1 4,726,843 + -2.4 4,726,884 + +0.1 4,726,937 - -1.9 4,727,018 + MPMX20_04519 0.11 -0.2 4,727,026 - MPMX20_04519 0.12 -0.2 4,727,028 + MPMX20_04519 0.12 +0.4 4,727,028 + MPMX20_04519 0.12 +3.3 4,727,036 - MPMX20_04519 0.13 +0.4 4,727,051 + MPMX20_04519 0.14 -0.7 4,727,059 - MPMX20_04519 0.15 +1.0 4,727,059 - MPMX20_04519 0.15 +0.1 4,727,067 + MPMX20_04519 0.16 +0.1 4,727,347 - MPMX20_04519 0.47 -0.6 4,727,383 + MPMX20_04519 0.51 -1.2 4,727,384 + MPMX20_04519 0.51 -0.1 4,727,392 - MPMX20_04519 0.52 -1.4 4,727,450 - MPMX20_04519 0.58 +2.1 4,727,450 - MPMX20_04519 0.58 +2.2 4,727,466 + MPMX20_04519 0.60 +0.1 4,727,496 - MPMX20_04519 0.63 -1.2 4,727,512 - MPMX20_04519 0.65 -2.4 4,727,523 + MPMX20_04519 0.66 +0.1 4,727,531 - MPMX20_04519 0.67 -3.9 4,727,537 - MPMX20_04519 0.67 +2.5 4,727,547 + MPMX20_04519 0.69 +0.4 4,727,607 + MPMX20_04519 0.75 -1.5 4,727,607 + MPMX20_04519 0.75 +0.6 4,727,635 - MPMX20_04519 0.78 -0.9 4,727,635 - MPMX20_04519 0.78 -1.4 4,727,742 + MPMX20_04519 0.90 +1.8 4,727,750 - +0.8 4,727,820 - -0.6 4,727,926 + -2.3
Or see this region's nucleotide sequence