Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04463

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04462 and MPMX20_04463 are separated by 357 nucleotidesMPMX20_04463 and MPMX20_04464 are separated by 80 nucleotidesMPMX20_04464 and MPMX20_04465 overlap by 1 nucleotides MPMX20_04462: MPMX20_04462 - Magnesium transport protein CorA, at 4,665,281 to 4,666,231 _04462 MPMX20_04463: MPMX20_04463 - DNA helicase II, at 4,666,589 to 4,668,751 _04463 MPMX20_04464: MPMX20_04464 - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB, at 4,668,832 to 4,669,548 _04464 MPMX20_04465: MPMX20_04465 - Tyrosine recombinase XerC, at 4,669,548 to 4,670,450 _04465 Position (kb) 4666 4667 4668 4669Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4665.678 kb on - strand, within MPMX20_04462at 4665.724 kb on - strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.774 kb on + strand, within MPMX20_04462at 4665.868 kb on + strand, within MPMX20_04462at 4665.876 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.915 kb on - strand, within MPMX20_04462at 4665.922 kb on + strand, within MPMX20_04462at 4665.970 kb on - strand, within MPMX20_04462at 4666.145 kb on + strandat 4666.163 kb on - strandat 4666.176 kb on - strandat 4666.182 kb on + strandat 4666.190 kb on - strandat 4666.213 kb on + strandat 4666.301 kb on + strandat 4666.319 kb on - strandat 4666.330 kb on + strandat 4666.360 kb on - strandat 4666.382 kb on - strandat 4666.440 kb on + strandat 4666.464 kb on - strandat 4666.615 kb on - strandat 4666.625 kb on - strandat 4666.667 kb on + strandat 4666.719 kb on - strandat 4666.799 kb on + strandat 4666.816 kb on + strand, within MPMX20_04463at 4666.820 kb on + strand, within MPMX20_04463at 4666.844 kb on - strand, within MPMX20_04463at 4666.844 kb on - strand, within MPMX20_04463at 4666.871 kb on + strand, within MPMX20_04463at 4666.887 kb on - strand, within MPMX20_04463at 4666.897 kb on - strand, within MPMX20_04463at 4666.994 kb on - strand, within MPMX20_04463at 4667.031 kb on - strand, within MPMX20_04463at 4667.054 kb on + strand, within MPMX20_04463at 4667.054 kb on + strand, within MPMX20_04463at 4667.062 kb on - strand, within MPMX20_04463at 4667.091 kb on + strand, within MPMX20_04463at 4667.114 kb on - strand, within MPMX20_04463at 4667.274 kb on - strand, within MPMX20_04463at 4667.362 kb on + strand, within MPMX20_04463at 4667.370 kb on - strand, within MPMX20_04463at 4667.544 kb on + strand, within MPMX20_04463at 4667.552 kb on - strand, within MPMX20_04463at 4667.666 kb on - strand, within MPMX20_04463at 4667.680 kb on - strand, within MPMX20_04463at 4667.707 kb on + strand, within MPMX20_04463at 4667.755 kb on - strand, within MPMX20_04463at 4667.760 kb on - strand, within MPMX20_04463at 4667.963 kb on + strand, within MPMX20_04463at 4668.018 kb on - strand, within MPMX20_04463at 4668.026 kb on - strand, within MPMX20_04463at 4668.053 kb on + strand, within MPMX20_04463at 4668.120 kb on + strand, within MPMX20_04463at 4668.181 kb on + strand, within MPMX20_04463at 4668.199 kb on - strand, within MPMX20_04463at 4668.199 kb on - strand, within MPMX20_04463at 4668.199 kb on - strand, within MPMX20_04463at 4668.214 kb on + strand, within MPMX20_04463at 4668.222 kb on - strand, within MPMX20_04463at 4668.400 kb on - strand, within MPMX20_04463at 4668.400 kb on - strand, within MPMX20_04463at 4668.599 kb on + strandat 4668.668 kb on - strandat 4668.736 kb on + strandat 4668.879 kb on + strandat 4668.910 kb on - strand, within MPMX20_04464at 4668.989 kb on - strand, within MPMX20_04464at 4669.122 kb on + strand, within MPMX20_04464at 4669.130 kb on - strand, within MPMX20_04464at 4669.251 kb on + strand, within MPMX20_04464at 4669.251 kb on + strand, within MPMX20_04464at 4669.259 kb on - strand, within MPMX20_04464at 4669.259 kb on - strand, within MPMX20_04464at 4669.259 kb on - strand, within MPMX20_04464at 4669.284 kb on + strand, within MPMX20_04464at 4669.324 kb on - strand, within MPMX20_04464at 4669.324 kb on - strand, within MPMX20_04464at 4669.356 kb on - strand, within MPMX20_04464at 4669.369 kb on + strand, within MPMX20_04464at 4669.408 kb on + strand, within MPMX20_04464at 4669.439 kb on - strand, within MPMX20_04464at 4669.457 kb on + strand, within MPMX20_04464at 4669.470 kb on - strand, within MPMX20_04464at 4669.508 kb on - strandat 4669.508 kb on - strandat 4669.508 kb on - strandat 4669.520 kb on - strandat 4669.534 kb on - strandat 4669.618 kb on + strandat 4669.618 kb on + strandat 4669.626 kb on - strandat 4669.650 kb on + strand, within MPMX20_04465at 4669.658 kb on - strand, within MPMX20_04465at 4669.743 kb on + strand, within MPMX20_04465

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,665,678 - MPMX20_04462 0.42 +0.8
4,665,724 - MPMX20_04462 0.47 +2.4
4,665,774 + MPMX20_04462 0.52 +0.1
4,665,774 + MPMX20_04462 0.52 -0.5
4,665,868 + MPMX20_04462 0.62 -2.0
4,665,876 - MPMX20_04462 0.63 +0.8
4,665,915 - MPMX20_04462 0.67 -2.3
4,665,915 - MPMX20_04462 0.67 +0.1
4,665,922 + MPMX20_04462 0.67 -2.3
4,665,970 - MPMX20_04462 0.72 +0.8
4,666,145 + -1.4
4,666,163 - -0.7
4,666,176 - +1.5
4,666,182 + -0.9
4,666,190 - +1.6
4,666,213 + -1.8
4,666,301 + -1.1
4,666,319 - +0.7
4,666,330 + +0.1
4,666,360 - -1.6
4,666,382 - -2.5
4,666,440 + -2.4
4,666,464 - -1.1
4,666,615 - +1.8
4,666,625 - +0.8
4,666,667 + -0.2
4,666,719 - +0.2
4,666,799 + +2.0
4,666,816 + MPMX20_04463 0.10 -0.1
4,666,820 + MPMX20_04463 0.11 -2.4
4,666,844 - MPMX20_04463 0.12 -2.0
4,666,844 - MPMX20_04463 0.12 +0.1
4,666,871 + MPMX20_04463 0.13 -1.0
4,666,887 - MPMX20_04463 0.14 -1.0
4,666,897 - MPMX20_04463 0.14 +0.8
4,666,994 - MPMX20_04463 0.19 -0.9
4,667,031 - MPMX20_04463 0.20 +0.4
4,667,054 + MPMX20_04463 0.21 +0.4
4,667,054 + MPMX20_04463 0.21 -0.4
4,667,062 - MPMX20_04463 0.22 -0.9
4,667,091 + MPMX20_04463 0.23 -0.4
4,667,114 - MPMX20_04463 0.24 -0.9
4,667,274 - MPMX20_04463 0.32 +0.8
4,667,362 + MPMX20_04463 0.36 +0.4
4,667,370 - MPMX20_04463 0.36 +1.4
4,667,544 + MPMX20_04463 0.44 -0.9
4,667,552 - MPMX20_04463 0.45 -1.4
4,667,666 - MPMX20_04463 0.50 -0.9
4,667,680 - MPMX20_04463 0.50 -0.8
4,667,707 + MPMX20_04463 0.52 -1.0
4,667,755 - MPMX20_04463 0.54 +2.4
4,667,760 - MPMX20_04463 0.54 -0.8
4,667,963 + MPMX20_04463 0.64 +0.8
4,668,018 - MPMX20_04463 0.66 -0.4
4,668,026 - MPMX20_04463 0.66 -2.5
4,668,053 + MPMX20_04463 0.68 -0.8
4,668,120 + MPMX20_04463 0.71 +0.1
4,668,181 + MPMX20_04463 0.74 -0.4
4,668,199 - MPMX20_04463 0.74 -1.9
4,668,199 - MPMX20_04463 0.74 -0.8
4,668,199 - MPMX20_04463 0.74 -0.2
4,668,214 + MPMX20_04463 0.75 +0.1
4,668,222 - MPMX20_04463 0.75 -0.2
4,668,400 - MPMX20_04463 0.84 -1.2
4,668,400 - MPMX20_04463 0.84 -1.5
4,668,599 + +0.5
4,668,668 - -1.7
4,668,736 + -1.8
4,668,879 + -2.2
4,668,910 - MPMX20_04464 0.11 -0.2
4,668,989 - MPMX20_04464 0.22 -2.0
4,669,122 + MPMX20_04464 0.40 -0.8
4,669,130 - MPMX20_04464 0.42 -0.1
4,669,251 + MPMX20_04464 0.58 +0.9
4,669,251 + MPMX20_04464 0.58 -1.0
4,669,259 - MPMX20_04464 0.60 -0.6
4,669,259 - MPMX20_04464 0.60 +0.1
4,669,259 - MPMX20_04464 0.60 -1.8
4,669,284 + MPMX20_04464 0.63 +1.2
4,669,324 - MPMX20_04464 0.69 +1.4
4,669,324 - MPMX20_04464 0.69 +1.0
4,669,356 - MPMX20_04464 0.73 -3.0
4,669,369 + MPMX20_04464 0.75 +0.1
4,669,408 + MPMX20_04464 0.80 +1.7
4,669,439 - MPMX20_04464 0.85 +0.4
4,669,457 + MPMX20_04464 0.87 +1.0
4,669,470 - MPMX20_04464 0.89 -2.6
4,669,508 - -1.6
4,669,508 - -1.0
4,669,508 - -1.3
4,669,520 - +1.2
4,669,534 - +1.2
4,669,618 + -0.9
4,669,618 + +0.4
4,669,626 - -1.6
4,669,650 + MPMX20_04465 0.11 -1.2
4,669,658 - MPMX20_04465 0.12 -1.3
4,669,743 + MPMX20_04465 0.22 -0.2

Or see this region's nucleotide sequence