Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04357 and MPMX20_04358 overlap by 4 nucleotides MPMX20_04358 and MPMX20_04359 overlap by 20 nucleotides MPMX20_04359 and MPMX20_04360 are separated by 13 nucleotides MPMX20_04360 and MPMX20_04361 are separated by 57 nucleotides MPMX20_04361 and MPMX20_04362 overlap by 8 nucleotides
MPMX20_04357: MPMX20_04357 - hypothetical protein, at 4,550,893 to 4,551,615
_04357
MPMX20_04358: MPMX20_04358 - hypothetical protein, at 4,551,612 to 4,552,427
_04358
MPMX20_04359: MPMX20_04359 - hypothetical protein, at 4,552,408 to 4,552,665
_04359
MPMX20_04360: MPMX20_04360 - Acyl carrier protein, at 4,552,679 to 4,552,930
_04360
MPMX20_04361: MPMX20_04361 - hypothetical protein, at 4,552,988 to 4,553,524
_04361
MPMX20_04362: MPMX20_04362 - hypothetical protein, at 4,553,517 to 4,554,878
_04362
Position (kb) 4552
4553 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4551.408 kb on - strand, within MPMX20_04357 at 4551.426 kb on + strand, within MPMX20_04357 at 4551.427 kb on + strand, within MPMX20_04357 at 4551.427 kb on + strand, within MPMX20_04357 at 4551.534 kb on - strand, within MPMX20_04357 at 4551.534 kb on - strand, within MPMX20_04357 at 4551.702 kb on - strand, within MPMX20_04358 at 4551.715 kb on + strand, within MPMX20_04358 at 4551.715 kb on + strand, within MPMX20_04358 at 4551.725 kb on + strand, within MPMX20_04358 at 4551.853 kb on + strand, within MPMX20_04358 at 4551.878 kb on - strand, within MPMX20_04358 at 4551.906 kb on - strand, within MPMX20_04358 at 4552.006 kb on - strand, within MPMX20_04358 at 4552.043 kb on + strand, within MPMX20_04358 at 4552.051 kb on - strand, within MPMX20_04358 at 4552.056 kb on - strand, within MPMX20_04358 at 4552.083 kb on + strand, within MPMX20_04358 at 4552.091 kb on - strand, within MPMX20_04358 at 4552.091 kb on - strand, within MPMX20_04358 at 4552.102 kb on + strand, within MPMX20_04358 at 4552.124 kb on + strand, within MPMX20_04358 at 4552.137 kb on - strand, within MPMX20_04358 at 4552.140 kb on - strand, within MPMX20_04358 at 4552.267 kb on + strand, within MPMX20_04358 at 4552.267 kb on + strand, within MPMX20_04358 at 4552.275 kb on - strand, within MPMX20_04358 at 4552.359 kb on + strand at 4552.367 kb on - strand at 4552.382 kb on + strand at 4552.383 kb on - strand at 4552.461 kb on + strand, within MPMX20_04359 at 4552.465 kb on - strand, within MPMX20_04359 at 4552.467 kb on + strand, within MPMX20_04359 at 4552.501 kb on - strand, within MPMX20_04359 at 4552.544 kb on + strand, within MPMX20_04359 at 4552.552 kb on - strand, within MPMX20_04359 at 4552.574 kb on + strand, within MPMX20_04359 at 4552.582 kb on - strand, within MPMX20_04359 at 4552.606 kb on + strand, within MPMX20_04359 at 4552.606 kb on + strand, within MPMX20_04359 at 4552.669 kb on - strand at 4552.674 kb on - strand at 4552.675 kb on + strand at 4552.718 kb on + strand, within MPMX20_04360 at 4552.718 kb on + strand, within MPMX20_04360 at 4552.726 kb on - strand, within MPMX20_04360 at 4552.732 kb on + strand, within MPMX20_04360 at 4552.732 kb on + strand, within MPMX20_04360 at 4552.732 kb on + strand, within MPMX20_04360 at 4552.740 kb on - strand, within MPMX20_04360 at 4552.740 kb on - strand, within MPMX20_04360 at 4552.740 kb on - strand, within MPMX20_04360 at 4552.740 kb on - strand, within MPMX20_04360 at 4552.740 kb on - strand, within MPMX20_04360 at 4552.764 kb on + strand, within MPMX20_04360 at 4552.764 kb on + strand, within MPMX20_04360 at 4552.797 kb on + strand, within MPMX20_04360 at 4552.805 kb on - strand, within MPMX20_04360 at 4552.818 kb on - strand, within MPMX20_04360 at 4552.818 kb on - strand, within MPMX20_04360 at 4552.864 kb on + strand, within MPMX20_04360 at 4552.864 kb on + strand, within MPMX20_04360 at 4552.864 kb on + strand, within MPMX20_04360 at 4552.888 kb on + strand, within MPMX20_04360 at 4552.888 kb on + strand, within MPMX20_04360 at 4552.926 kb on + strand at 4552.933 kb on - strand at 4552.933 kb on - strand at 4553.012 kb on + strand at 4553.033 kb on + strand at 4553.033 kb on + strand at 4553.068 kb on - strand, within MPMX20_04361 at 4553.123 kb on + strand, within MPMX20_04361 at 4553.126 kb on - strand, within MPMX20_04361 at 4553.128 kb on + strand, within MPMX20_04361 at 4553.128 kb on - strand, within MPMX20_04361 at 4553.130 kb on + strand, within MPMX20_04361 at 4553.140 kb on + strand, within MPMX20_04361 at 4553.181 kb on - strand, within MPMX20_04361 at 4553.197 kb on + strand, within MPMX20_04361 at 4553.197 kb on + strand, within MPMX20_04361 at 4553.202 kb on + strand, within MPMX20_04361 at 4553.220 kb on - strand, within MPMX20_04361 at 4553.220 kb on - strand, within MPMX20_04361 at 4553.286 kb on - strand, within MPMX20_04361 at 4553.328 kb on + strand, within MPMX20_04361 at 4553.340 kb on + strand, within MPMX20_04361 at 4553.342 kb on - strand, within MPMX20_04361 at 4553.344 kb on + strand, within MPMX20_04361 at 4553.389 kb on - strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.413 kb on + strand, within MPMX20_04361 at 4553.421 kb on - strand, within MPMX20_04361 at 4553.421 kb on - strand, within MPMX20_04361 at 4553.423 kb on + strand, within MPMX20_04361 at 4553.423 kb on + strand, within MPMX20_04361 at 4553.423 kb on + strand, within MPMX20_04361 at 4553.431 kb on - strand, within MPMX20_04361 at 4553.431 kb on - strand, within MPMX20_04361 at 4553.431 kb on - strand, within MPMX20_04361 at 4553.476 kb on - strand at 4553.527 kb on - strand at 4553.528 kb on - strand at 4553.546 kb on - strand at 4553.581 kb on + strand at 4553.597 kb on + strand at 4553.661 kb on - strand, within MPMX20_04362 at 4553.664 kb on + strand, within MPMX20_04362 at 4553.664 kb on + strand, within MPMX20_04362 at 4553.665 kb on - strand, within MPMX20_04362 at 4553.665 kb on - strand, within MPMX20_04362
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,551,408 - MPMX20_04357 0.71 -1.3 4,551,426 + MPMX20_04357 0.74 +2.3 4,551,427 + MPMX20_04357 0.74 +1.5 4,551,427 + MPMX20_04357 0.74 -1.1 4,551,534 - MPMX20_04357 0.89 +1.7 4,551,534 - MPMX20_04357 0.89 -0.6 4,551,702 - MPMX20_04358 0.11 -0.1 4,551,715 + MPMX20_04358 0.13 -2.6 4,551,715 + MPMX20_04358 0.13 -0.9 4,551,725 + MPMX20_04358 0.14 +2.5 4,551,853 + MPMX20_04358 0.30 -1.7 4,551,878 - MPMX20_04358 0.33 +0.2 4,551,906 - MPMX20_04358 0.36 -2.1 4,552,006 - MPMX20_04358 0.48 +0.4 4,552,043 + MPMX20_04358 0.53 +1.3 4,552,051 - MPMX20_04358 0.54 +2.4 4,552,056 - MPMX20_04358 0.54 -0.3 4,552,083 + MPMX20_04358 0.58 +1.3 4,552,091 - MPMX20_04358 0.59 -0.9 4,552,091 - MPMX20_04358 0.59 -2.2 4,552,102 + MPMX20_04358 0.60 +0.9 4,552,124 + MPMX20_04358 0.63 +2.3 4,552,137 - MPMX20_04358 0.64 +0.4 4,552,140 - MPMX20_04358 0.65 -0.3 4,552,267 + MPMX20_04358 0.80 -0.5 4,552,267 + MPMX20_04358 0.80 -1.0 4,552,275 - MPMX20_04358 0.81 -0.4 4,552,359 + +0.4 4,552,367 - -1.1 4,552,382 + -2.1 4,552,383 - -0.9 4,552,461 + MPMX20_04359 0.21 +0.9 4,552,465 - MPMX20_04359 0.22 +0.2 4,552,467 + MPMX20_04359 0.23 +0.1 4,552,501 - MPMX20_04359 0.36 -2.4 4,552,544 + MPMX20_04359 0.53 -1.9 4,552,552 - MPMX20_04359 0.56 +0.5 4,552,574 + MPMX20_04359 0.64 -0.3 4,552,582 - MPMX20_04359 0.67 -1.8 4,552,606 + MPMX20_04359 0.77 -0.3 4,552,606 + MPMX20_04359 0.77 -1.5 4,552,669 - -0.1 4,552,674 - -0.4 4,552,675 + +1.5 4,552,718 + MPMX20_04360 0.15 +2.0 4,552,718 + MPMX20_04360 0.15 -2.8 4,552,726 - MPMX20_04360 0.19 -2.2 4,552,732 + MPMX20_04360 0.21 +2.5 4,552,732 + MPMX20_04360 0.21 +0.5 4,552,732 + MPMX20_04360 0.21 -0.1 4,552,740 - MPMX20_04360 0.24 -1.2 4,552,740 - MPMX20_04360 0.24 -2.2 4,552,740 - MPMX20_04360 0.24 +1.2 4,552,740 - MPMX20_04360 0.24 -0.4 4,552,740 - MPMX20_04360 0.24 +0.1 4,552,764 + MPMX20_04360 0.34 -1.0 4,552,764 + MPMX20_04360 0.34 +0.5 4,552,797 + MPMX20_04360 0.47 +0.6 4,552,805 - MPMX20_04360 0.50 -1.7 4,552,818 - MPMX20_04360 0.55 +0.8 4,552,818 - MPMX20_04360 0.55 +1.1 4,552,864 + MPMX20_04360 0.73 -0.8 4,552,864 + MPMX20_04360 0.73 -0.2 4,552,864 + MPMX20_04360 0.73 +1.2 4,552,888 + MPMX20_04360 0.83 -1.4 4,552,888 + MPMX20_04360 0.83 +0.9 4,552,926 + -1.1 4,552,933 - -2.4 4,552,933 - -0.2 4,553,012 + +0.9 4,553,033 + +0.9 4,553,033 + +1.5 4,553,068 - MPMX20_04361 0.15 -3.3 4,553,123 + MPMX20_04361 0.25 +2.9 4,553,126 - MPMX20_04361 0.26 -1.5 4,553,128 + MPMX20_04361 0.26 -3.7 4,553,128 - MPMX20_04361 0.26 -0.4 4,553,130 + MPMX20_04361 0.26 +0.4 4,553,140 + MPMX20_04361 0.28 +0.2 4,553,181 - MPMX20_04361 0.36 +0.1 4,553,197 + MPMX20_04361 0.39 -0.4 4,553,197 + MPMX20_04361 0.39 +0.5 4,553,202 + MPMX20_04361 0.40 -1.5 4,553,220 - MPMX20_04361 0.43 -0.6 4,553,220 - MPMX20_04361 0.43 +0.8 4,553,286 - MPMX20_04361 0.55 -2.8 4,553,328 + MPMX20_04361 0.63 +0.5 4,553,340 + MPMX20_04361 0.66 -2.8 4,553,342 - MPMX20_04361 0.66 +0.1 4,553,344 + MPMX20_04361 0.66 -0.1 4,553,389 - MPMX20_04361 0.75 -1.9 4,553,413 + MPMX20_04361 0.79 -2.1 4,553,413 + MPMX20_04361 0.79 -0.4 4,553,413 + MPMX20_04361 0.79 +1.0 4,553,413 + MPMX20_04361 0.79 +0.5 4,553,413 + MPMX20_04361 0.79 +1.5 4,553,413 + MPMX20_04361 0.79 +1.8 4,553,421 - MPMX20_04361 0.81 -0.3 4,553,421 - MPMX20_04361 0.81 -0.7 4,553,423 + MPMX20_04361 0.81 -2.8 4,553,423 + MPMX20_04361 0.81 +0.1 4,553,423 + MPMX20_04361 0.81 -0.3 4,553,431 - MPMX20_04361 0.82 +0.1 4,553,431 - MPMX20_04361 0.82 +0.1 4,553,431 - MPMX20_04361 0.82 -0.6 4,553,476 - -0.5 4,553,527 - -0.5 4,553,528 - -1.5 4,553,546 - +1.0 4,553,581 + -0.9 4,553,597 + -2.2 4,553,661 - MPMX20_04362 0.11 -1.2 4,553,664 + MPMX20_04362 0.11 +1.5 4,553,664 + MPMX20_04362 0.11 +1.0 4,553,665 - MPMX20_04362 0.11 -0.9 4,553,665 - MPMX20_04362 0.11 -0.5
Or see this region's nucleotide sequence