Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04308

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04306 and MPMX20_04307 are separated by 16 nucleotidesMPMX20_04307 and MPMX20_04308 are separated by 47 nucleotidesMPMX20_04308 and MPMX20_04309 are separated by 252 nucleotides MPMX20_04306: MPMX20_04306 - Glycerol-3-phosphate regulon repressor, at 4,496,142 to 4,496,900 _04306 MPMX20_04307: MPMX20_04307 - Rhomboid protease GlpG, at 4,496,917 to 4,497,747 _04307 MPMX20_04308: MPMX20_04308 - Thiosulfate sulfurtransferase GlpE, at 4,497,795 to 4,498,127 _04308 MPMX20_04309: MPMX20_04309 - Aerobic glycerol-3-phosphate dehydrogenase, at 4,498,380 to 4,499,888 _04309 Position (kb) 4497 4498 4499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4496.831 kb on + strandat 4496.896 kb on - strandat 4496.934 kb on + strandat 4496.976 kb on + strandat 4496.994 kb on - strandat 4497.018 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.104 kb on + strand, within MPMX20_04307at 4497.111 kb on + strand, within MPMX20_04307at 4497.117 kb on - strand, within MPMX20_04307at 4497.191 kb on + strand, within MPMX20_04307at 4497.191 kb on - strand, within MPMX20_04307at 4497.191 kb on - strand, within MPMX20_04307at 4497.211 kb on - strand, within MPMX20_04307at 4497.228 kb on + strand, within MPMX20_04307at 4497.379 kb on - strand, within MPMX20_04307at 4497.383 kb on - strand, within MPMX20_04307at 4497.454 kb on - strand, within MPMX20_04307at 4497.456 kb on + strand, within MPMX20_04307at 4497.468 kb on - strand, within MPMX20_04307at 4497.519 kb on - strand, within MPMX20_04307at 4497.633 kb on + strand, within MPMX20_04307at 4497.669 kb on + strandat 4497.669 kb on + strandat 4497.677 kb on - strandat 4497.677 kb on - strandat 4497.711 kb on - strandat 4497.721 kb on - strandat 4497.728 kb on - strandat 4497.743 kb on + strandat 4497.877 kb on + strand, within MPMX20_04308at 4497.988 kb on - strand, within MPMX20_04308at 4498.010 kb on + strand, within MPMX20_04308at 4498.018 kb on - strand, within MPMX20_04308at 4498.018 kb on - strand, within MPMX20_04308at 4498.035 kb on + strand, within MPMX20_04308at 4498.035 kb on + strand, within MPMX20_04308at 4498.036 kb on - strand, within MPMX20_04308at 4498.061 kb on + strand, within MPMX20_04308at 4498.066 kb on + strand, within MPMX20_04308at 4498.066 kb on + strand, within MPMX20_04308at 4498.129 kb on - strandat 4498.131 kb on + strandat 4498.152 kb on - strandat 4498.170 kb on + strandat 4498.178 kb on - strandat 4498.180 kb on + strandat 4498.180 kb on + strandat 4498.188 kb on - strandat 4498.203 kb on - strandat 4498.203 kb on - strandat 4498.222 kb on + strandat 4498.230 kb on - strandat 4498.230 kb on - strandat 4498.230 kb on - strandat 4498.230 kb on - strandat 4498.261 kb on - strandat 4498.533 kb on + strand, within MPMX20_04309at 4498.541 kb on - strand, within MPMX20_04309at 4498.586 kb on - strand, within MPMX20_04309at 4498.596 kb on - strand, within MPMX20_04309at 4498.636 kb on + strand, within MPMX20_04309at 4498.827 kb on + strand, within MPMX20_04309at 4498.835 kb on - strand, within MPMX20_04309at 4498.974 kb on - strand, within MPMX20_04309at 4498.989 kb on - strand, within MPMX20_04309at 4499.005 kb on + strand, within MPMX20_04309at 4499.061 kb on - strand, within MPMX20_04309at 4499.113 kb on + strand, within MPMX20_04309at 4499.119 kb on - strand, within MPMX20_04309at 4499.119 kb on - strand, within MPMX20_04309

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,496,831 + -2.8
4,496,896 - -1.6
4,496,934 + -0.9
4,496,976 + -3.4
4,496,994 - +1.2
4,497,018 + MPMX20_04307 0.12 -0.0
4,497,104 + MPMX20_04307 0.23 -0.7
4,497,104 + MPMX20_04307 0.23 +2.2
4,497,104 + MPMX20_04307 0.23 +1.3
4,497,104 + MPMX20_04307 0.23 +0.5
4,497,111 + MPMX20_04307 0.23 -0.0
4,497,117 - MPMX20_04307 0.24 -0.1
4,497,191 + MPMX20_04307 0.33 -0.6
4,497,191 - MPMX20_04307 0.33 -0.3
4,497,191 - MPMX20_04307 0.33 -1.5
4,497,211 - MPMX20_04307 0.35 +0.9
4,497,228 + MPMX20_04307 0.37 -0.3
4,497,379 - MPMX20_04307 0.56 +0.0
4,497,383 - MPMX20_04307 0.56 +0.6
4,497,454 - MPMX20_04307 0.65 -0.5
4,497,456 + MPMX20_04307 0.65 +4.2
4,497,468 - MPMX20_04307 0.66 +0.7
4,497,519 - MPMX20_04307 0.72 -0.1
4,497,633 + MPMX20_04307 0.86 -1.1
4,497,669 + -2.2
4,497,669 + -0.4
4,497,677 - +0.6
4,497,677 - -1.6
4,497,711 - +1.9
4,497,721 - -0.7
4,497,728 - -0.6
4,497,743 + -0.5
4,497,877 + MPMX20_04308 0.25 -1.1
4,497,988 - MPMX20_04308 0.58 +0.3
4,498,010 + MPMX20_04308 0.65 -0.6
4,498,018 - MPMX20_04308 0.67 -1.0
4,498,018 - MPMX20_04308 0.67 -2.7
4,498,035 + MPMX20_04308 0.72 -2.0
4,498,035 + MPMX20_04308 0.72 -0.1
4,498,036 - MPMX20_04308 0.72 -0.9
4,498,061 + MPMX20_04308 0.80 -1.9
4,498,066 + MPMX20_04308 0.81 -0.6
4,498,066 + MPMX20_04308 0.81 -1.0
4,498,129 - +0.9
4,498,131 + +0.9
4,498,152 - +1.4
4,498,170 + +0.4
4,498,178 - +0.9
4,498,180 + -0.6
4,498,180 + -0.9
4,498,188 - -2.6
4,498,203 - -1.4
4,498,203 - +0.3
4,498,222 + -0.0
4,498,230 - +0.4
4,498,230 - -0.9
4,498,230 - -1.2
4,498,230 - -1.6
4,498,261 - -0.0
4,498,533 + MPMX20_04309 0.10 +0.1
4,498,541 - MPMX20_04309 0.11 +0.9
4,498,586 - MPMX20_04309 0.14 +0.9
4,498,596 - MPMX20_04309 0.14 +1.4
4,498,636 + MPMX20_04309 0.17 -0.4
4,498,827 + MPMX20_04309 0.30 +2.1
4,498,835 - MPMX20_04309 0.30 +2.1
4,498,974 - MPMX20_04309 0.39 +0.9
4,498,989 - MPMX20_04309 0.40 +0.9
4,499,005 + MPMX20_04309 0.41 +0.9
4,499,061 - MPMX20_04309 0.45 +0.4
4,499,113 + MPMX20_04309 0.49 -1.1
4,499,119 - MPMX20_04309 0.49 +0.1
4,499,119 - MPMX20_04309 0.49 +0.4

Or see this region's nucleotide sequence