Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04240 and MPMX20_04241 are separated by 237 nucleotides MPMX20_04241 and MPMX20_04242 are separated by 54 nucleotides MPMX20_04242 and MPMX20_04243 are separated by 94 nucleotides MPMX20_04243 and MPMX20_04244 are separated by 13 nucleotides
MPMX20_04240: MPMX20_04240 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 4,424,224 to 4,425,045
_04240
MPMX20_04241: MPMX20_04241 - Protein SlyX, at 4,425,283 to 4,425,501
_04241
MPMX20_04242: MPMX20_04242 - hypothetical protein, at 4,425,556 to 4,426,146
_04242
MPMX20_04243: MPMX20_04243 - hypothetical protein, at 4,426,241 to 4,426,441
_04243
MPMX20_04244: MPMX20_04244 - Glutathione-regulated potassium-efflux system protein KefC, at 4,426,455 to 4,428,260
_04244
Position (kb)
4425
4426 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4424.294 kb on + strand at 4424.294 kb on + strand at 4424.294 kb on + strand at 4424.302 kb on - strand at 4424.302 kb on - strand at 4424.302 kb on - strand at 4424.310 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.328 kb on + strand, within MPMX20_04240 at 4424.336 kb on - strand, within MPMX20_04240 at 4424.343 kb on - strand, within MPMX20_04240 at 4424.472 kb on - strand, within MPMX20_04240 at 4424.472 kb on - strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.478 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.486 kb on + strand, within MPMX20_04240 at 4424.494 kb on - strand, within MPMX20_04240 at 4424.494 kb on - strand, within MPMX20_04240 at 4424.554 kb on + strand, within MPMX20_04240 at 4424.554 kb on + strand, within MPMX20_04240 at 4424.562 kb on - strand, within MPMX20_04240 at 4424.562 kb on - strand, within MPMX20_04240 at 4424.599 kb on - strand, within MPMX20_04240 at 4424.604 kb on - strand, within MPMX20_04240 at 4424.650 kb on - strand, within MPMX20_04240 at 4424.653 kb on + strand, within MPMX20_04240 at 4424.711 kb on + strand, within MPMX20_04240 at 4424.758 kb on + strand, within MPMX20_04240 at 4424.796 kb on - strand, within MPMX20_04240 at 4424.814 kb on - strand, within MPMX20_04240 at 4424.816 kb on - strand, within MPMX20_04240 at 4424.880 kb on - strand, within MPMX20_04240 at 4424.925 kb on + strand, within MPMX20_04240 at 4424.927 kb on + strand, within MPMX20_04240 at 4424.933 kb on - strand, within MPMX20_04240 at 4424.935 kb on + strand, within MPMX20_04240 at 4424.940 kb on - strand, within MPMX20_04240 at 4424.953 kb on + strand, within MPMX20_04240 at 4424.963 kb on + strand at 4424.972 kb on + strand at 4424.977 kb on + strand at 4424.980 kb on - strand at 4425.021 kb on + strand at 4425.021 kb on + strand at 4425.026 kb on + strand at 4425.034 kb on - strand at 4425.034 kb on - strand at 4425.058 kb on + strand at 4425.058 kb on + strand at 4425.058 kb on + strand at 4425.060 kb on - strand at 4425.066 kb on - strand at 4425.076 kb on - strand at 4425.086 kb on + strand at 4425.104 kb on + strand at 4425.106 kb on + strand at 4425.106 kb on + strand at 4425.148 kb on - strand at 4425.204 kb on - strand at 4425.211 kb on - strand at 4425.217 kb on + strand at 4425.233 kb on - strand at 4425.288 kb on + strand at 4425.311 kb on + strand, within MPMX20_04241 at 4425.360 kb on + strand, within MPMX20_04241 at 4425.363 kb on + strand, within MPMX20_04241 at 4425.371 kb on - strand, within MPMX20_04241 at 4425.412 kb on + strand, within MPMX20_04241 at 4425.451 kb on - strand, within MPMX20_04241 at 4425.490 kb on + strand at 4425.490 kb on + strand at 4425.490 kb on + strand at 4425.490 kb on - strand at 4425.566 kb on + strand at 4425.571 kb on + strand at 4425.590 kb on + strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.598 kb on - strand at 4425.806 kb on + strand, within MPMX20_04242 at 4425.926 kb on - strand, within MPMX20_04242 at 4426.046 kb on - strand, within MPMX20_04242 at 4426.072 kb on - strand, within MPMX20_04242 at 4426.152 kb on + strand at 4426.201 kb on + strand at 4426.203 kb on + strand at 4426.299 kb on + strand, within MPMX20_04243 at 4426.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,424,294 + +0.9 4,424,294 + -1.6 4,424,294 + -2.8 4,424,302 - -2.6 4,424,302 - -0.3 4,424,302 - -2.0 4,424,310 + MPMX20_04240 0.10 -1.8 4,424,328 + MPMX20_04240 0.13 -1.2 4,424,328 + MPMX20_04240 0.13 +0.7 4,424,328 + MPMX20_04240 0.13 +1.7 4,424,328 + MPMX20_04240 0.13 +1.0 4,424,336 - MPMX20_04240 0.14 -0.1 4,424,343 - MPMX20_04240 0.14 -0.8 4,424,472 - MPMX20_04240 0.30 -2.2 4,424,472 - MPMX20_04240 0.30 +0.6 4,424,478 + MPMX20_04240 0.31 -1.5 4,424,478 + MPMX20_04240 0.31 +0.5 4,424,478 + MPMX20_04240 0.31 -0.9 4,424,486 + MPMX20_04240 0.32 -0.1 4,424,486 + MPMX20_04240 0.32 -2.5 4,424,486 + MPMX20_04240 0.32 -1.8 4,424,486 + MPMX20_04240 0.32 +0.1 4,424,494 - MPMX20_04240 0.33 +0.5 4,424,494 - MPMX20_04240 0.33 +1.6 4,424,554 + MPMX20_04240 0.40 +0.5 4,424,554 + MPMX20_04240 0.40 -0.7 4,424,562 - MPMX20_04240 0.41 -2.4 4,424,562 - MPMX20_04240 0.41 -2.6 4,424,599 - MPMX20_04240 0.46 +0.6 4,424,604 - MPMX20_04240 0.46 -1.6 4,424,650 - MPMX20_04240 0.52 +0.2 4,424,653 + MPMX20_04240 0.52 -0.2 4,424,711 + MPMX20_04240 0.59 +0.9 4,424,758 + MPMX20_04240 0.65 -2.3 4,424,796 - MPMX20_04240 0.70 +0.7 4,424,814 - MPMX20_04240 0.72 +2.5 4,424,816 - MPMX20_04240 0.72 -3.7 4,424,880 - MPMX20_04240 0.80 -1.1 4,424,925 + MPMX20_04240 0.85 -3.0 4,424,927 + MPMX20_04240 0.86 -2.0 4,424,933 - MPMX20_04240 0.86 -0.3 4,424,935 + MPMX20_04240 0.86 +1.5 4,424,940 - MPMX20_04240 0.87 +0.3 4,424,953 + MPMX20_04240 0.89 -0.2 4,424,963 + +0.5 4,424,972 + -0.1 4,424,977 + -1.2 4,424,980 - +3.1 4,425,021 + -0.3 4,425,021 + -1.2 4,425,026 + -0.3 4,425,034 - +0.8 4,425,034 - -0.2 4,425,058 + -1.6 4,425,058 + -0.0 4,425,058 + -1.1 4,425,060 - +1.4 4,425,066 - -0.8 4,425,076 - -1.4 4,425,086 + +0.2 4,425,104 + +0.1 4,425,106 + +0.9 4,425,106 + -1.3 4,425,148 - -0.3 4,425,204 - +0.6 4,425,211 - -3.6 4,425,217 + -1.8 4,425,233 - +1.5 4,425,288 + -0.4 4,425,311 + MPMX20_04241 0.13 -1.2 4,425,360 + MPMX20_04241 0.35 -0.7 4,425,363 + MPMX20_04241 0.37 -0.8 4,425,371 - MPMX20_04241 0.40 -0.1 4,425,412 + MPMX20_04241 0.59 -2.4 4,425,451 - MPMX20_04241 0.77 -0.3 4,425,490 + -0.8 4,425,490 + +1.3 4,425,490 + +1.2 4,425,490 - -2.3 4,425,566 + +1.5 4,425,571 + +0.1 4,425,590 + +0.7 4,425,598 - -0.2 4,425,598 - -1.0 4,425,598 - +2.5 4,425,598 - -3.1 4,425,598 - -1.1 4,425,598 - -0.1 4,425,598 - +2.5 4,425,806 + MPMX20_04242 0.42 -0.7 4,425,926 - MPMX20_04242 0.63 -1.2 4,426,046 - MPMX20_04242 0.83 -2.6 4,426,072 - MPMX20_04242 0.87 -1.6 4,426,152 + -0.5 4,426,201 + -1.9 4,426,203 + -0.9 4,426,299 + MPMX20_04243 0.29 -1.0 4,426,430 + -2.8
Or see this region's nucleotide sequence