Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04193 and MPMX20_04194 are separated by 113 nucleotides MPMX20_04194 and MPMX20_04195 are separated by 25 nucleotides
MPMX20_04193: MPMX20_04193 - hypothetical protein, at 4,395,141 to 4,396,280
_04193
MPMX20_04194: MPMX20_04194 - Peptide deformylase, at 4,396,394 to 4,396,903
_04194
MPMX20_04195: MPMX20_04195 - Methionyl-tRNA formyltransferase, at 4,396,929 to 4,397,876
_04195
Position (kb)
4396
4397 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4395.521 kb on - strand, within MPMX20_04193 at 4395.527 kb on + strand, within MPMX20_04193 at 4395.527 kb on + strand, within MPMX20_04193 at 4395.539 kb on + strand, within MPMX20_04193 at 4395.539 kb on + strand, within MPMX20_04193 at 4395.547 kb on - strand, within MPMX20_04193 at 4395.552 kb on - strand, within MPMX20_04193 at 4395.584 kb on - strand, within MPMX20_04193 at 4395.602 kb on + strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.610 kb on - strand, within MPMX20_04193 at 4395.662 kb on + strand, within MPMX20_04193 at 4395.762 kb on + strand, within MPMX20_04193 at 4395.768 kb on - strand, within MPMX20_04193 at 4395.770 kb on + strand, within MPMX20_04193 at 4395.770 kb on + strand, within MPMX20_04193 at 4395.778 kb on - strand, within MPMX20_04193 at 4395.778 kb on - strand, within MPMX20_04193 at 4395.805 kb on - strand, within MPMX20_04193 at 4395.810 kb on - strand, within MPMX20_04193 at 4395.826 kb on + strand, within MPMX20_04193 at 4395.826 kb on + strand, within MPMX20_04193 at 4395.914 kb on + strand, within MPMX20_04193 at 4395.982 kb on + strand, within MPMX20_04193 at 4395.986 kb on - strand, within MPMX20_04193 at 4396.061 kb on + strand, within MPMX20_04193 at 4396.061 kb on + strand, within MPMX20_04193 at 4396.074 kb on - strand, within MPMX20_04193 at 4396.074 kb on - strand, within MPMX20_04193 at 4396.113 kb on - strand, within MPMX20_04193 at 4396.122 kb on + strand, within MPMX20_04193 at 4396.160 kb on + strand, within MPMX20_04193 at 4396.171 kb on + strand at 4396.187 kb on - strand at 4396.227 kb on + strand at 4396.230 kb on - strand at 4396.232 kb on + strand at 4396.232 kb on + strand at 4396.232 kb on + strand at 4396.240 kb on - strand at 4396.243 kb on + strand at 4396.315 kb on - strand at 4396.324 kb on + strand at 4396.358 kb on + strand at 4396.363 kb on + strand at 4396.371 kb on + strand at 4396.374 kb on + strand at 4396.819 kb on + strand, within MPMX20_04194 at 4396.830 kb on + strand, within MPMX20_04194 at 4397.848 kb on + strand at 4397.848 kb on + strand at 4397.848 kb on + strand at 4397.870 kb on + strand at 4397.870 kb on + strand at 4397.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,395,521 - MPMX20_04193 0.33 -1.8 4,395,527 + MPMX20_04193 0.34 +0.9 4,395,527 + MPMX20_04193 0.34 +4.0 4,395,539 + MPMX20_04193 0.35 -2.0 4,395,539 + MPMX20_04193 0.35 -1.0 4,395,547 - MPMX20_04193 0.36 -0.2 4,395,552 - MPMX20_04193 0.36 +0.2 4,395,584 - MPMX20_04193 0.39 -1.5 4,395,602 + MPMX20_04193 0.40 -0.5 4,395,610 - MPMX20_04193 0.41 -0.0 4,395,610 - MPMX20_04193 0.41 +0.5 4,395,610 - MPMX20_04193 0.41 -0.6 4,395,662 + MPMX20_04193 0.46 -0.8 4,395,762 + MPMX20_04193 0.54 -1.2 4,395,768 - MPMX20_04193 0.55 +0.5 4,395,770 + MPMX20_04193 0.55 -0.3 4,395,770 + MPMX20_04193 0.55 -0.1 4,395,778 - MPMX20_04193 0.56 -2.5 4,395,778 - MPMX20_04193 0.56 -1.4 4,395,805 - MPMX20_04193 0.58 +0.2 4,395,810 - MPMX20_04193 0.59 -0.8 4,395,826 + MPMX20_04193 0.60 +1.1 4,395,826 + MPMX20_04193 0.60 -0.3 4,395,914 + MPMX20_04193 0.68 -1.5 4,395,982 + MPMX20_04193 0.74 +2.5 4,395,986 - MPMX20_04193 0.74 -1.9 4,396,061 + MPMX20_04193 0.81 -0.9 4,396,061 + MPMX20_04193 0.81 -0.5 4,396,074 - MPMX20_04193 0.82 +0.2 4,396,074 - MPMX20_04193 0.82 +1.9 4,396,113 - MPMX20_04193 0.85 -1.0 4,396,122 + MPMX20_04193 0.86 +1.5 4,396,160 + MPMX20_04193 0.89 -2.0 4,396,171 + +0.9 4,396,187 - -0.0 4,396,227 + +0.0 4,396,230 - -0.4 4,396,232 + -0.3 4,396,232 + -2.4 4,396,232 + -1.8 4,396,240 - -2.7 4,396,243 + -3.0 4,396,315 - +1.6 4,396,324 + +1.9 4,396,358 + +0.6 4,396,363 + +1.5 4,396,371 + +1.5 4,396,374 + +0.2 4,396,819 + MPMX20_04194 0.83 -1.6 4,396,830 + MPMX20_04194 0.85 -1.1 4,397,848 + -2.5 4,397,848 + +1.5 4,397,848 + -0.9 4,397,870 + -0.8 4,397,870 + +0.4 4,397,871 + -0.0
Or see this region's nucleotide sequence