Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04194

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04193 and MPMX20_04194 are separated by 113 nucleotidesMPMX20_04194 and MPMX20_04195 are separated by 25 nucleotides MPMX20_04193: MPMX20_04193 - hypothetical protein, at 4,395,141 to 4,396,280 _04193 MPMX20_04194: MPMX20_04194 - Peptide deformylase, at 4,396,394 to 4,396,903 _04194 MPMX20_04195: MPMX20_04195 - Methionyl-tRNA formyltransferase, at 4,396,929 to 4,397,876 _04195 Position (kb) 4396 4397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4395.521 kb on - strand, within MPMX20_04193at 4395.527 kb on + strand, within MPMX20_04193at 4395.527 kb on + strand, within MPMX20_04193at 4395.539 kb on + strand, within MPMX20_04193at 4395.539 kb on + strand, within MPMX20_04193at 4395.547 kb on - strand, within MPMX20_04193at 4395.552 kb on - strand, within MPMX20_04193at 4395.584 kb on - strand, within MPMX20_04193at 4395.602 kb on + strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.610 kb on - strand, within MPMX20_04193at 4395.662 kb on + strand, within MPMX20_04193at 4395.762 kb on + strand, within MPMX20_04193at 4395.768 kb on - strand, within MPMX20_04193at 4395.770 kb on + strand, within MPMX20_04193at 4395.770 kb on + strand, within MPMX20_04193at 4395.778 kb on - strand, within MPMX20_04193at 4395.778 kb on - strand, within MPMX20_04193at 4395.805 kb on - strand, within MPMX20_04193at 4395.810 kb on - strand, within MPMX20_04193at 4395.826 kb on + strand, within MPMX20_04193at 4395.826 kb on + strand, within MPMX20_04193at 4395.914 kb on + strand, within MPMX20_04193at 4395.982 kb on + strand, within MPMX20_04193at 4395.986 kb on - strand, within MPMX20_04193at 4396.061 kb on + strand, within MPMX20_04193at 4396.061 kb on + strand, within MPMX20_04193at 4396.074 kb on - strand, within MPMX20_04193at 4396.074 kb on - strand, within MPMX20_04193at 4396.113 kb on - strand, within MPMX20_04193at 4396.122 kb on + strand, within MPMX20_04193at 4396.160 kb on + strand, within MPMX20_04193at 4396.171 kb on + strandat 4396.187 kb on - strandat 4396.227 kb on + strandat 4396.230 kb on - strandat 4396.232 kb on + strandat 4396.232 kb on + strandat 4396.232 kb on + strandat 4396.240 kb on - strandat 4396.243 kb on + strandat 4396.315 kb on - strandat 4396.324 kb on + strandat 4396.358 kb on + strandat 4396.363 kb on + strandat 4396.371 kb on + strandat 4396.374 kb on + strandat 4396.819 kb on + strand, within MPMX20_04194at 4396.830 kb on + strand, within MPMX20_04194at 4397.848 kb on + strandat 4397.848 kb on + strandat 4397.848 kb on + strandat 4397.870 kb on + strandat 4397.870 kb on + strandat 4397.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,395,521 - MPMX20_04193 0.33 -1.8
4,395,527 + MPMX20_04193 0.34 +0.9
4,395,527 + MPMX20_04193 0.34 +4.0
4,395,539 + MPMX20_04193 0.35 -2.0
4,395,539 + MPMX20_04193 0.35 -1.0
4,395,547 - MPMX20_04193 0.36 -0.2
4,395,552 - MPMX20_04193 0.36 +0.2
4,395,584 - MPMX20_04193 0.39 -1.5
4,395,602 + MPMX20_04193 0.40 -0.5
4,395,610 - MPMX20_04193 0.41 -0.0
4,395,610 - MPMX20_04193 0.41 +0.5
4,395,610 - MPMX20_04193 0.41 -0.6
4,395,662 + MPMX20_04193 0.46 -0.8
4,395,762 + MPMX20_04193 0.54 -1.2
4,395,768 - MPMX20_04193 0.55 +0.5
4,395,770 + MPMX20_04193 0.55 -0.3
4,395,770 + MPMX20_04193 0.55 -0.1
4,395,778 - MPMX20_04193 0.56 -2.5
4,395,778 - MPMX20_04193 0.56 -1.4
4,395,805 - MPMX20_04193 0.58 +0.2
4,395,810 - MPMX20_04193 0.59 -0.8
4,395,826 + MPMX20_04193 0.60 +1.1
4,395,826 + MPMX20_04193 0.60 -0.3
4,395,914 + MPMX20_04193 0.68 -1.5
4,395,982 + MPMX20_04193 0.74 +2.5
4,395,986 - MPMX20_04193 0.74 -1.9
4,396,061 + MPMX20_04193 0.81 -0.9
4,396,061 + MPMX20_04193 0.81 -0.5
4,396,074 - MPMX20_04193 0.82 +0.2
4,396,074 - MPMX20_04193 0.82 +1.9
4,396,113 - MPMX20_04193 0.85 -1.0
4,396,122 + MPMX20_04193 0.86 +1.5
4,396,160 + MPMX20_04193 0.89 -2.0
4,396,171 + +0.9
4,396,187 - -0.0
4,396,227 + +0.0
4,396,230 - -0.4
4,396,232 + -0.3
4,396,232 + -2.4
4,396,232 + -1.8
4,396,240 - -2.7
4,396,243 + -3.0
4,396,315 - +1.6
4,396,324 + +1.9
4,396,358 + +0.6
4,396,363 + +1.5
4,396,371 + +1.5
4,396,374 + +0.2
4,396,819 + MPMX20_04194 0.83 -1.6
4,396,830 + MPMX20_04194 0.85 -1.1
4,397,848 + -2.5
4,397,848 + +1.5
4,397,848 + -0.9
4,397,870 + -0.8
4,397,870 + +0.4
4,397,871 + -0.0

Or see this region's nucleotide sequence