Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04167

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04166 and MPMX20_04167 are separated by 11 nucleotidesMPMX20_04167 and MPMX20_04168 are separated by 137 nucleotides MPMX20_04166: MPMX20_04166 - Sodium/pantothenate symporter, at 4,368,296 to 4,369,747 _04166 MPMX20_04167: MPMX20_04167 - Ribosomal protein L11 methyltransferase, at 4,369,759 to 4,370,640 _04167 MPMX20_04168: MPMX20_04168 - Carbonic anhydrase, at 4,370,778 to 4,371,518 _04168 Position (kb) 4369 4370 4371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4368.786 kb on + strand, within MPMX20_04166at 4368.798 kb on + strand, within MPMX20_04166at 4368.806 kb on - strand, within MPMX20_04166at 4368.808 kb on + strand, within MPMX20_04166at 4368.920 kb on + strand, within MPMX20_04166at 4368.920 kb on + strand, within MPMX20_04166at 4368.920 kb on + strand, within MPMX20_04166at 4368.920 kb on + strand, within MPMX20_04166at 4368.920 kb on + strand, within MPMX20_04166at 4368.928 kb on - strand, within MPMX20_04166at 4368.928 kb on - strand, within MPMX20_04166at 4368.979 kb on + strand, within MPMX20_04166at 4368.986 kb on + strand, within MPMX20_04166at 4369.005 kb on + strand, within MPMX20_04166at 4369.018 kb on + strand, within MPMX20_04166at 4369.035 kb on + strand, within MPMX20_04166at 4369.043 kb on - strand, within MPMX20_04166at 4369.043 kb on - strand, within MPMX20_04166at 4369.043 kb on - strand, within MPMX20_04166at 4369.054 kb on + strand, within MPMX20_04166at 4369.088 kb on - strand, within MPMX20_04166at 4369.090 kb on + strand, within MPMX20_04166at 4369.098 kb on - strand, within MPMX20_04166at 4369.141 kb on + strand, within MPMX20_04166at 4369.159 kb on + strand, within MPMX20_04166at 4369.194 kb on + strand, within MPMX20_04166at 4369.194 kb on + strand, within MPMX20_04166at 4369.225 kb on - strand, within MPMX20_04166at 4369.259 kb on + strand, within MPMX20_04166at 4369.350 kb on + strand, within MPMX20_04166at 4369.357 kb on + strand, within MPMX20_04166at 4369.372 kb on + strand, within MPMX20_04166at 4369.441 kb on - strand, within MPMX20_04166at 4369.476 kb on + strand, within MPMX20_04166at 4369.550 kb on - strand, within MPMX20_04166at 4369.552 kb on + strand, within MPMX20_04166at 4369.559 kb on - strand, within MPMX20_04166at 4369.576 kb on - strand, within MPMX20_04166at 4369.590 kb on + strand, within MPMX20_04166at 4369.597 kb on + strand, within MPMX20_04166at 4369.605 kb on - strandat 4369.639 kb on + strandat 4369.688 kb on + strandat 4369.780 kb on - strandat 4369.809 kb on + strandat 4369.817 kb on - strandat 4369.817 kb on - strandat 4369.822 kb on - strandat 4369.840 kb on + strandat 4369.919 kb on - strand, within MPMX20_04167at 4369.989 kb on + strand, within MPMX20_04167at 4370.219 kb on + strand, within MPMX20_04167at 4370.338 kb on + strand, within MPMX20_04167at 4370.346 kb on - strand, within MPMX20_04167at 4370.346 kb on - strand, within MPMX20_04167at 4370.360 kb on - strand, within MPMX20_04167at 4370.392 kb on - strand, within MPMX20_04167at 4370.412 kb on + strand, within MPMX20_04167at 4370.412 kb on + strand, within MPMX20_04167at 4370.492 kb on - strand, within MPMX20_04167at 4370.586 kb on + strandat 4370.655 kb on + strandat 4370.655 kb on + strandat 4370.663 kb on - strandat 4370.667 kb on + strandat 4370.673 kb on - strandat 4370.675 kb on - strandat 4370.681 kb on + strandat 4370.744 kb on + strandat 4370.763 kb on - strandat 4370.818 kb on + strandat 4370.829 kb on + strandat 4370.829 kb on + strandat 4370.837 kb on - strandat 4370.843 kb on - strandat 4370.847 kb on - strandat 4370.849 kb on - strandat 4370.857 kb on + strand, within MPMX20_04168at 4370.862 kb on + strand, within MPMX20_04168at 4370.894 kb on + strand, within MPMX20_04168at 4370.923 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.969 kb on + strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4370.977 kb on - strand, within MPMX20_04168at 4371.012 kb on - strand, within MPMX20_04168at 4371.031 kb on + strand, within MPMX20_04168at 4371.039 kb on - strand, within MPMX20_04168at 4371.067 kb on + strand, within MPMX20_04168at 4371.068 kb on + strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.094 kb on - strand, within MPMX20_04168at 4371.104 kb on - strand, within MPMX20_04168at 4371.259 kb on - strand, within MPMX20_04168at 4371.260 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.265 kb on + strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.273 kb on - strand, within MPMX20_04168at 4371.365 kb on + strand, within MPMX20_04168at 4371.367 kb on + strand, within MPMX20_04168at 4371.388 kb on + strand, within MPMX20_04168at 4371.392 kb on + strand, within MPMX20_04168at 4371.432 kb on - strand, within MPMX20_04168at 4371.435 kb on - strand, within MPMX20_04168at 4371.472 kb on - strandat 4371.491 kb on - strandat 4371.492 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
remove
4,368,786 + MPMX20_04166 0.34 -1.5
4,368,798 + MPMX20_04166 0.35 -0.4
4,368,806 - MPMX20_04166 0.35 -0.3
4,368,808 + MPMX20_04166 0.35 +0.6
4,368,920 + MPMX20_04166 0.43 -2.4
4,368,920 + MPMX20_04166 0.43 -0.3
4,368,920 + MPMX20_04166 0.43 -0.3
4,368,920 + MPMX20_04166 0.43 -1.6
4,368,920 + MPMX20_04166 0.43 -1.3
4,368,928 - MPMX20_04166 0.44 -1.0
4,368,928 - MPMX20_04166 0.44 +1.5
4,368,979 + MPMX20_04166 0.47 -0.5
4,368,986 + MPMX20_04166 0.48 -0.0
4,369,005 + MPMX20_04166 0.49 +0.1
4,369,018 + MPMX20_04166 0.50 -1.2
4,369,035 + MPMX20_04166 0.51 -2.5
4,369,043 - MPMX20_04166 0.51 -1.8
4,369,043 - MPMX20_04166 0.51 -0.1
4,369,043 - MPMX20_04166 0.51 +0.1
4,369,054 + MPMX20_04166 0.52 +1.0
4,369,088 - MPMX20_04166 0.55 -3.2
4,369,090 + MPMX20_04166 0.55 -1.7
4,369,098 - MPMX20_04166 0.55 +1.2
4,369,141 + MPMX20_04166 0.58 -0.4
4,369,159 + MPMX20_04166 0.59 -0.5
4,369,194 + MPMX20_04166 0.62 -3.0
4,369,194 + MPMX20_04166 0.62 -3.0
4,369,225 - MPMX20_04166 0.64 +3.3
4,369,259 + MPMX20_04166 0.66 +0.9
4,369,350 + MPMX20_04166 0.73 -1.5
4,369,357 + MPMX20_04166 0.73 -1.0
4,369,372 + MPMX20_04166 0.74 -1.1
4,369,441 - MPMX20_04166 0.79 +0.5
4,369,476 + MPMX20_04166 0.81 +0.9
4,369,550 - MPMX20_04166 0.86 -0.5
4,369,552 + MPMX20_04166 0.87 -1.6
4,369,559 - MPMX20_04166 0.87 -1.0
4,369,576 - MPMX20_04166 0.88 +1.9
4,369,590 + MPMX20_04166 0.89 -2.2
4,369,597 + MPMX20_04166 0.90 -2.7
4,369,605 - +2.5
4,369,639 + +1.5
4,369,688 + -0.6
4,369,780 - -1.4
4,369,809 + +1.5
4,369,817 - -0.5
4,369,817 - -3.0
4,369,822 - -0.6
4,369,840 + -0.1
4,369,919 - MPMX20_04167 0.18 +1.5
4,369,989 + MPMX20_04167 0.26 -2.6
4,370,219 + MPMX20_04167 0.52 +1.5
4,370,338 + MPMX20_04167 0.66 +0.1
4,370,346 - MPMX20_04167 0.67 -2.7
4,370,346 - MPMX20_04167 0.67 -0.1
4,370,360 - MPMX20_04167 0.68 +1.7
4,370,392 - MPMX20_04167 0.72 -0.1
4,370,412 + MPMX20_04167 0.74 -1.2
4,370,412 + MPMX20_04167 0.74 -0.9
4,370,492 - MPMX20_04167 0.83 -1.5
4,370,586 + +0.3
4,370,655 + -2.5
4,370,655 + +0.9
4,370,663 - -3.2
4,370,667 + +0.1
4,370,673 - +2.1
4,370,675 - -0.9
4,370,681 + -0.3
4,370,744 + +0.1
4,370,763 - +0.7
4,370,818 + -1.5
4,370,829 + -2.2
4,370,829 + -1.6
4,370,837 - -1.1
4,370,843 - +1.5
4,370,847 - +0.5
4,370,849 - +1.5
4,370,857 + MPMX20_04168 0.11 +2.5
4,370,862 + MPMX20_04168 0.11 +0.8
4,370,894 + MPMX20_04168 0.16 +0.0
4,370,923 + MPMX20_04168 0.20 -0.3
4,370,969 + MPMX20_04168 0.26 -1.6
4,370,969 + MPMX20_04168 0.26 -1.5
4,370,977 - MPMX20_04168 0.27 +0.4
4,370,977 - MPMX20_04168 0.27 +0.6
4,371,012 - MPMX20_04168 0.32 +0.2
4,371,031 + MPMX20_04168 0.34 +4.0
4,371,039 - MPMX20_04168 0.35 +0.4
4,371,067 + MPMX20_04168 0.39 +0.4
4,371,068 + MPMX20_04168 0.39 -1.5
4,371,094 - MPMX20_04168 0.43 -0.6
4,371,094 - MPMX20_04168 0.43 +1.5
4,371,094 - MPMX20_04168 0.43 +0.3
4,371,104 - MPMX20_04168 0.44 +0.9
4,371,259 - MPMX20_04168 0.65 -1.2
4,371,260 + MPMX20_04168 0.65 -0.4
4,371,265 + MPMX20_04168 0.66 -0.1
4,371,265 + MPMX20_04168 0.66 +0.6
4,371,265 + MPMX20_04168 0.66 -2.5
4,371,265 + MPMX20_04168 0.66 +1.5
4,371,273 - MPMX20_04168 0.67 +0.3
4,371,273 - MPMX20_04168 0.67 +0.5
4,371,273 - MPMX20_04168 0.67 -0.7
4,371,273 - MPMX20_04168 0.67 +1.8
4,371,273 - MPMX20_04168 0.67 +0.7
4,371,273 - MPMX20_04168 0.67 +1.5
4,371,273 - MPMX20_04168 0.67 -2.1
4,371,365 + MPMX20_04168 0.79 +0.5
4,371,367 + MPMX20_04168 0.79 +1.5
4,371,388 + MPMX20_04168 0.82 -1.5
4,371,392 + MPMX20_04168 0.83 -1.1
4,371,432 - MPMX20_04168 0.88 -1.5
4,371,435 - MPMX20_04168 0.89 +0.1
4,371,472 - -0.6
4,371,491 - -1.7
4,371,492 + -1.2

Or see this region's nucleotide sequence