Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04166 and MPMX20_04167 are separated by 11 nucleotides MPMX20_04167 and MPMX20_04168 are separated by 137 nucleotides
MPMX20_04166: MPMX20_04166 - Sodium/pantothenate symporter, at 4,368,296 to 4,369,747
_04166
MPMX20_04167: MPMX20_04167 - Ribosomal protein L11 methyltransferase, at 4,369,759 to 4,370,640
_04167
MPMX20_04168: MPMX20_04168 - Carbonic anhydrase, at 4,370,778 to 4,371,518
_04168
Position (kb)
4369
4370
4371 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4368.786 kb on + strand, within MPMX20_04166 at 4368.798 kb on + strand, within MPMX20_04166 at 4368.806 kb on - strand, within MPMX20_04166 at 4368.808 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.920 kb on + strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166 at 4368.928 kb on - strand, within MPMX20_04166 at 4368.979 kb on + strand, within MPMX20_04166 at 4368.986 kb on + strand, within MPMX20_04166 at 4369.005 kb on + strand, within MPMX20_04166 at 4369.018 kb on + strand, within MPMX20_04166 at 4369.035 kb on + strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.043 kb on - strand, within MPMX20_04166 at 4369.054 kb on + strand, within MPMX20_04166 at 4369.088 kb on - strand, within MPMX20_04166 at 4369.090 kb on + strand, within MPMX20_04166 at 4369.098 kb on - strand, within MPMX20_04166 at 4369.141 kb on + strand, within MPMX20_04166 at 4369.159 kb on + strand, within MPMX20_04166 at 4369.194 kb on + strand, within MPMX20_04166 at 4369.194 kb on + strand, within MPMX20_04166 at 4369.225 kb on - strand, within MPMX20_04166 at 4369.259 kb on + strand, within MPMX20_04166 at 4369.350 kb on + strand, within MPMX20_04166 at 4369.357 kb on + strand, within MPMX20_04166 at 4369.372 kb on + strand, within MPMX20_04166 at 4369.441 kb on - strand, within MPMX20_04166 at 4369.476 kb on + strand, within MPMX20_04166 at 4369.550 kb on - strand, within MPMX20_04166 at 4369.552 kb on + strand, within MPMX20_04166 at 4369.559 kb on - strand, within MPMX20_04166 at 4369.576 kb on - strand, within MPMX20_04166 at 4369.590 kb on + strand, within MPMX20_04166 at 4369.597 kb on + strand, within MPMX20_04166 at 4369.605 kb on - strand at 4369.639 kb on + strand at 4369.688 kb on + strand at 4369.780 kb on - strand at 4369.809 kb on + strand at 4369.817 kb on - strand at 4369.817 kb on - strand at 4369.822 kb on - strand at 4369.840 kb on + strand at 4369.919 kb on - strand, within MPMX20_04167 at 4369.989 kb on + strand, within MPMX20_04167 at 4370.219 kb on + strand, within MPMX20_04167 at 4370.338 kb on + strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.346 kb on - strand, within MPMX20_04167 at 4370.360 kb on - strand, within MPMX20_04167 at 4370.392 kb on - strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.412 kb on + strand, within MPMX20_04167 at 4370.492 kb on - strand, within MPMX20_04167 at 4370.586 kb on + strand at 4370.655 kb on + strand at 4370.655 kb on + strand at 4370.663 kb on - strand at 4370.667 kb on + strand at 4370.673 kb on - strand at 4370.675 kb on - strand at 4370.681 kb on + strand at 4370.744 kb on + strand at 4370.763 kb on - strand at 4370.818 kb on + strand at 4370.829 kb on + strand at 4370.829 kb on + strand at 4370.837 kb on - strand at 4370.843 kb on - strand at 4370.847 kb on - strand at 4370.849 kb on - strand at 4370.857 kb on + strand, within MPMX20_04168 at 4370.862 kb on + strand, within MPMX20_04168 at 4370.894 kb on + strand, within MPMX20_04168 at 4370.923 kb on + strand, within MPMX20_04168 at 4370.969 kb on + strand, within MPMX20_04168 at 4370.969 kb on + strand, within MPMX20_04168 at 4370.977 kb on - strand, within MPMX20_04168 at 4370.977 kb on - strand, within MPMX20_04168 at 4371.012 kb on - strand, within MPMX20_04168 at 4371.031 kb on + strand, within MPMX20_04168 at 4371.039 kb on - strand, within MPMX20_04168 at 4371.067 kb on + strand, within MPMX20_04168 at 4371.068 kb on + strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.094 kb on - strand, within MPMX20_04168 at 4371.104 kb on - strand, within MPMX20_04168 at 4371.259 kb on - strand, within MPMX20_04168 at 4371.260 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.265 kb on + strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.273 kb on - strand, within MPMX20_04168 at 4371.365 kb on + strand, within MPMX20_04168 at 4371.367 kb on + strand, within MPMX20_04168 at 4371.388 kb on + strand, within MPMX20_04168 at 4371.392 kb on + strand, within MPMX20_04168 at 4371.432 kb on - strand, within MPMX20_04168 at 4371.435 kb on - strand, within MPMX20_04168 at 4371.472 kb on - strand at 4371.491 kb on - strand at 4371.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,368,786 + MPMX20_04166 0.34 -1.5 4,368,798 + MPMX20_04166 0.35 -0.4 4,368,806 - MPMX20_04166 0.35 -0.3 4,368,808 + MPMX20_04166 0.35 +0.6 4,368,920 + MPMX20_04166 0.43 -2.4 4,368,920 + MPMX20_04166 0.43 -0.3 4,368,920 + MPMX20_04166 0.43 -0.3 4,368,920 + MPMX20_04166 0.43 -1.6 4,368,920 + MPMX20_04166 0.43 -1.3 4,368,928 - MPMX20_04166 0.44 -1.0 4,368,928 - MPMX20_04166 0.44 +1.5 4,368,979 + MPMX20_04166 0.47 -0.5 4,368,986 + MPMX20_04166 0.48 -0.0 4,369,005 + MPMX20_04166 0.49 +0.1 4,369,018 + MPMX20_04166 0.50 -1.2 4,369,035 + MPMX20_04166 0.51 -2.5 4,369,043 - MPMX20_04166 0.51 -1.8 4,369,043 - MPMX20_04166 0.51 -0.1 4,369,043 - MPMX20_04166 0.51 +0.1 4,369,054 + MPMX20_04166 0.52 +1.0 4,369,088 - MPMX20_04166 0.55 -3.2 4,369,090 + MPMX20_04166 0.55 -1.7 4,369,098 - MPMX20_04166 0.55 +1.2 4,369,141 + MPMX20_04166 0.58 -0.4 4,369,159 + MPMX20_04166 0.59 -0.5 4,369,194 + MPMX20_04166 0.62 -3.0 4,369,194 + MPMX20_04166 0.62 -3.0 4,369,225 - MPMX20_04166 0.64 +3.3 4,369,259 + MPMX20_04166 0.66 +0.9 4,369,350 + MPMX20_04166 0.73 -1.5 4,369,357 + MPMX20_04166 0.73 -1.0 4,369,372 + MPMX20_04166 0.74 -1.1 4,369,441 - MPMX20_04166 0.79 +0.5 4,369,476 + MPMX20_04166 0.81 +0.9 4,369,550 - MPMX20_04166 0.86 -0.5 4,369,552 + MPMX20_04166 0.87 -1.6 4,369,559 - MPMX20_04166 0.87 -1.0 4,369,576 - MPMX20_04166 0.88 +1.9 4,369,590 + MPMX20_04166 0.89 -2.2 4,369,597 + MPMX20_04166 0.90 -2.7 4,369,605 - +2.5 4,369,639 + +1.5 4,369,688 + -0.6 4,369,780 - -1.4 4,369,809 + +1.5 4,369,817 - -0.5 4,369,817 - -3.0 4,369,822 - -0.6 4,369,840 + -0.1 4,369,919 - MPMX20_04167 0.18 +1.5 4,369,989 + MPMX20_04167 0.26 -2.6 4,370,219 + MPMX20_04167 0.52 +1.5 4,370,338 + MPMX20_04167 0.66 +0.1 4,370,346 - MPMX20_04167 0.67 -2.7 4,370,346 - MPMX20_04167 0.67 -0.1 4,370,360 - MPMX20_04167 0.68 +1.7 4,370,392 - MPMX20_04167 0.72 -0.1 4,370,412 + MPMX20_04167 0.74 -1.2 4,370,412 + MPMX20_04167 0.74 -0.9 4,370,492 - MPMX20_04167 0.83 -1.5 4,370,586 + +0.3 4,370,655 + -2.5 4,370,655 + +0.9 4,370,663 - -3.2 4,370,667 + +0.1 4,370,673 - +2.1 4,370,675 - -0.9 4,370,681 + -0.3 4,370,744 + +0.1 4,370,763 - +0.7 4,370,818 + -1.5 4,370,829 + -2.2 4,370,829 + -1.6 4,370,837 - -1.1 4,370,843 - +1.5 4,370,847 - +0.5 4,370,849 - +1.5 4,370,857 + MPMX20_04168 0.11 +2.5 4,370,862 + MPMX20_04168 0.11 +0.8 4,370,894 + MPMX20_04168 0.16 +0.0 4,370,923 + MPMX20_04168 0.20 -0.3 4,370,969 + MPMX20_04168 0.26 -1.6 4,370,969 + MPMX20_04168 0.26 -1.5 4,370,977 - MPMX20_04168 0.27 +0.4 4,370,977 - MPMX20_04168 0.27 +0.6 4,371,012 - MPMX20_04168 0.32 +0.2 4,371,031 + MPMX20_04168 0.34 +4.0 4,371,039 - MPMX20_04168 0.35 +0.4 4,371,067 + MPMX20_04168 0.39 +0.4 4,371,068 + MPMX20_04168 0.39 -1.5 4,371,094 - MPMX20_04168 0.43 -0.6 4,371,094 - MPMX20_04168 0.43 +1.5 4,371,094 - MPMX20_04168 0.43 +0.3 4,371,104 - MPMX20_04168 0.44 +0.9 4,371,259 - MPMX20_04168 0.65 -1.2 4,371,260 + MPMX20_04168 0.65 -0.4 4,371,265 + MPMX20_04168 0.66 -0.1 4,371,265 + MPMX20_04168 0.66 +0.6 4,371,265 + MPMX20_04168 0.66 -2.5 4,371,265 + MPMX20_04168 0.66 +1.5 4,371,273 - MPMX20_04168 0.67 +0.3 4,371,273 - MPMX20_04168 0.67 +0.5 4,371,273 - MPMX20_04168 0.67 -0.7 4,371,273 - MPMX20_04168 0.67 +1.8 4,371,273 - MPMX20_04168 0.67 +0.7 4,371,273 - MPMX20_04168 0.67 +1.5 4,371,273 - MPMX20_04168 0.67 -2.1 4,371,365 + MPMX20_04168 0.79 +0.5 4,371,367 + MPMX20_04168 0.79 +1.5 4,371,388 + MPMX20_04168 0.82 -1.5 4,371,392 + MPMX20_04168 0.83 -1.1 4,371,432 - MPMX20_04168 0.88 -1.5 4,371,435 - MPMX20_04168 0.89 +0.1 4,371,472 - -0.6 4,371,491 - -1.7 4,371,492 + -1.2
Or see this region's nucleotide sequence