Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04148

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04146 and MPMX20_04147 are separated by 5 nucleotidesMPMX20_04147 and MPMX20_04148 are separated by 7 nucleotidesMPMX20_04148 and MPMX20_04149 are separated by 179 nucleotides MPMX20_04146: MPMX20_04146 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 4,345,215 to 4,347,182 _04146 MPMX20_04147: MPMX20_04147 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 4,347,188 to 4,348,120 _04147 MPMX20_04148: MPMX20_04148 - Protein AaeX, at 4,348,128 to 4,348,331 _04148 MPMX20_04149: MPMX20_04149 - HTH-type transcriptional regulator DmlR, at 4,348,511 to 4,349,437 _04149 Position (kb) 4348 4349Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4347.274 kb on - strandat 4347.274 kb on - strandat 4347.294 kb on + strand, within MPMX20_04147at 4347.305 kb on + strand, within MPMX20_04147at 4347.336 kb on + strand, within MPMX20_04147at 4347.342 kb on + strand, within MPMX20_04147at 4347.346 kb on + strand, within MPMX20_04147at 4347.346 kb on + strand, within MPMX20_04147at 4347.346 kb on + strand, within MPMX20_04147at 4347.354 kb on - strand, within MPMX20_04147at 4347.367 kb on + strand, within MPMX20_04147at 4347.400 kb on + strand, within MPMX20_04147at 4347.408 kb on - strand, within MPMX20_04147at 4347.408 kb on - strand, within MPMX20_04147at 4347.408 kb on - strand, within MPMX20_04147at 4347.408 kb on - strand, within MPMX20_04147at 4347.408 kb on - strand, within MPMX20_04147at 4347.422 kb on - strand, within MPMX20_04147at 4347.424 kb on + strand, within MPMX20_04147at 4347.549 kb on + strand, within MPMX20_04147at 4347.552 kb on - strand, within MPMX20_04147at 4347.568 kb on + strand, within MPMX20_04147at 4347.640 kb on - strand, within MPMX20_04147at 4347.661 kb on + strand, within MPMX20_04147at 4347.666 kb on + strand, within MPMX20_04147at 4347.684 kb on - strand, within MPMX20_04147at 4347.743 kb on - strand, within MPMX20_04147at 4347.743 kb on - strand, within MPMX20_04147at 4347.745 kb on + strand, within MPMX20_04147at 4347.745 kb on + strand, within MPMX20_04147at 4347.890 kb on + strand, within MPMX20_04147at 4347.947 kb on + strand, within MPMX20_04147at 4347.947 kb on + strand, within MPMX20_04147at 4347.955 kb on - strand, within MPMX20_04147at 4347.955 kb on - strand, within MPMX20_04147at 4347.961 kb on + strand, within MPMX20_04147at 4347.995 kb on - strand, within MPMX20_04147at 4348.023 kb on + strand, within MPMX20_04147at 4348.025 kb on + strand, within MPMX20_04147at 4348.030 kb on + strandat 4348.066 kb on - strandat 4348.162 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.177 kb on + strand, within MPMX20_04148at 4348.185 kb on - strand, within MPMX20_04148at 4348.185 kb on - strand, within MPMX20_04148at 4348.185 kb on - strand, within MPMX20_04148at 4348.185 kb on - strand, within MPMX20_04148at 4348.185 kb on - strand, within MPMX20_04148at 4348.232 kb on - strand, within MPMX20_04148at 4348.232 kb on - strand, within MPMX20_04148at 4348.313 kb on - strandat 4348.352 kb on + strandat 4348.352 kb on + strandat 4348.358 kb on + strandat 4348.359 kb on - strandat 4348.360 kb on - strandat 4348.360 kb on - strandat 4348.384 kb on + strandat 4348.456 kb on + strandat 4348.586 kb on + strandat 4348.610 kb on + strand, within MPMX20_04149at 4348.662 kb on - strand, within MPMX20_04149at 4348.682 kb on - strand, within MPMX20_04149at 4348.682 kb on - strand, within MPMX20_04149at 4348.682 kb on - strand, within MPMX20_04149at 4348.699 kb on + strand, within MPMX20_04149at 4348.736 kb on + strand, within MPMX20_04149at 4348.736 kb on + strand, within MPMX20_04149at 4348.764 kb on - strand, within MPMX20_04149at 4348.771 kb on + strand, within MPMX20_04149at 4348.880 kb on + strand, within MPMX20_04149at 4348.885 kb on + strand, within MPMX20_04149at 4348.893 kb on - strand, within MPMX20_04149at 4348.931 kb on - strand, within MPMX20_04149at 4348.931 kb on - strand, within MPMX20_04149at 4348.967 kb on - strand, within MPMX20_04149at 4348.981 kb on + strand, within MPMX20_04149at 4349.027 kb on + strand, within MPMX20_04149at 4349.027 kb on + strand, within MPMX20_04149at 4349.035 kb on - strand, within MPMX20_04149at 4349.040 kb on - strand, within MPMX20_04149at 4349.071 kb on + strand, within MPMX20_04149at 4349.079 kb on - strand, within MPMX20_04149at 4349.079 kb on - strand, within MPMX20_04149at 4349.080 kb on + strand, within MPMX20_04149at 4349.080 kb on + strand, within MPMX20_04149at 4349.114 kb on - strand, within MPMX20_04149at 4349.165 kb on + strand, within MPMX20_04149at 4349.220 kb on + strand, within MPMX20_04149at 4349.228 kb on + strand, within MPMX20_04149at 4349.228 kb on + strand, within MPMX20_04149at 4349.228 kb on + strand, within MPMX20_04149at 4349.251 kb on + strand, within MPMX20_04149at 4349.259 kb on + strand, within MPMX20_04149at 4349.262 kb on - strand, within MPMX20_04149at 4349.264 kb on + strand, within MPMX20_04149at 4349.264 kb on + strand, within MPMX20_04149at 4349.278 kb on + strand, within MPMX20_04149at 4349.278 kb on - strand, within MPMX20_04149at 4349.292 kb on + strand, within MPMX20_04149at 4349.292 kb on + strand, within MPMX20_04149at 4349.295 kb on - strand, within MPMX20_04149at 4349.303 kb on + strand, within MPMX20_04149at 4349.303 kb on + strand, within MPMX20_04149at 4349.308 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.309 kb on + strand, within MPMX20_04149at 4349.311 kb on - strand, within MPMX20_04149at 4349.311 kb on - strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.315 kb on + strand, within MPMX20_04149at 4349.317 kb on + strand, within MPMX20_04149at 4349.317 kb on + strand, within MPMX20_04149at 4349.317 kb on + strand, within MPMX20_04149at 4349.317 kb on + strand, within MPMX20_04149at 4349.317 kb on - strand, within MPMX20_04149at 4349.318 kb on + strand, within MPMX20_04149at 4349.323 kb on - strand, within MPMX20_04149

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,347,274 - -1.3
4,347,274 - -0.5
4,347,294 + MPMX20_04147 0.11 -0.1
4,347,305 + MPMX20_04147 0.13 -2.4
4,347,336 + MPMX20_04147 0.16 +0.1
4,347,342 + MPMX20_04147 0.17 -2.3
4,347,346 + MPMX20_04147 0.17 -0.2
4,347,346 + MPMX20_04147 0.17 +2.3
4,347,346 + MPMX20_04147 0.17 -0.2
4,347,354 - MPMX20_04147 0.18 -2.0
4,347,367 + MPMX20_04147 0.19 -1.2
4,347,400 + MPMX20_04147 0.23 +1.6
4,347,408 - MPMX20_04147 0.24 -2.7
4,347,408 - MPMX20_04147 0.24 -1.1
4,347,408 - MPMX20_04147 0.24 -1.6
4,347,408 - MPMX20_04147 0.24 +0.4
4,347,408 - MPMX20_04147 0.24 +2.5
4,347,422 - MPMX20_04147 0.25 +0.5
4,347,424 + MPMX20_04147 0.25 +2.2
4,347,549 + MPMX20_04147 0.39 -0.3
4,347,552 - MPMX20_04147 0.39 +0.9
4,347,568 + MPMX20_04147 0.41 -2.1
4,347,640 - MPMX20_04147 0.48 -2.8
4,347,661 + MPMX20_04147 0.51 +0.5
4,347,666 + MPMX20_04147 0.51 -2.3
4,347,684 - MPMX20_04147 0.53 +0.8
4,347,743 - MPMX20_04147 0.59 +1.5
4,347,743 - MPMX20_04147 0.59 -0.6
4,347,745 + MPMX20_04147 0.60 -0.3
4,347,745 + MPMX20_04147 0.60 +0.6
4,347,890 + MPMX20_04147 0.75 +1.7
4,347,947 + MPMX20_04147 0.81 +2.5
4,347,947 + MPMX20_04147 0.81 +0.9
4,347,955 - MPMX20_04147 0.82 -1.0
4,347,955 - MPMX20_04147 0.82 +0.9
4,347,961 + MPMX20_04147 0.83 -1.4
4,347,995 - MPMX20_04147 0.86 +0.3
4,348,023 + MPMX20_04147 0.89 -1.1
4,348,025 + MPMX20_04147 0.90 -2.0
4,348,030 + -1.1
4,348,066 - +1.5
4,348,162 + MPMX20_04148 0.17 -3.4
4,348,177 + MPMX20_04148 0.24 -1.0
4,348,177 + MPMX20_04148 0.24 +1.0
4,348,177 + MPMX20_04148 0.24 -0.5
4,348,177 + MPMX20_04148 0.24 -0.1
4,348,177 + MPMX20_04148 0.24 -0.2
4,348,177 + MPMX20_04148 0.24 -1.0
4,348,177 + MPMX20_04148 0.24 -2.8
4,348,177 + MPMX20_04148 0.24 +0.7
4,348,185 - MPMX20_04148 0.28 -3.1
4,348,185 - MPMX20_04148 0.28 +0.2
4,348,185 - MPMX20_04148 0.28 -1.4
4,348,185 - MPMX20_04148 0.28 +0.0
4,348,185 - MPMX20_04148 0.28 +1.4
4,348,232 - MPMX20_04148 0.51 -1.2
4,348,232 - MPMX20_04148 0.51 -0.7
4,348,313 - +0.3
4,348,352 + +1.5
4,348,352 + +0.3
4,348,358 + -0.0
4,348,359 - -0.4
4,348,360 - -0.3
4,348,360 - -0.3
4,348,384 + -3.1
4,348,456 + +0.9
4,348,586 + -0.0
4,348,610 + MPMX20_04149 0.11 +1.7
4,348,662 - MPMX20_04149 0.16 -0.5
4,348,682 - MPMX20_04149 0.18 +1.0
4,348,682 - MPMX20_04149 0.18 -2.1
4,348,682 - MPMX20_04149 0.18 -1.0
4,348,699 + MPMX20_04149 0.20 -0.7
4,348,736 + MPMX20_04149 0.24 +0.3
4,348,736 + MPMX20_04149 0.24 +0.5
4,348,764 - MPMX20_04149 0.27 +0.1
4,348,771 + MPMX20_04149 0.28 +0.0
4,348,880 + MPMX20_04149 0.40 -2.0
4,348,885 + MPMX20_04149 0.40 -0.1
4,348,893 - MPMX20_04149 0.41 +0.1
4,348,931 - MPMX20_04149 0.45 -2.2
4,348,931 - MPMX20_04149 0.45 +1.3
4,348,967 - MPMX20_04149 0.49 +0.9
4,348,981 + MPMX20_04149 0.51 -2.2
4,349,027 + MPMX20_04149 0.56 -0.9
4,349,027 + MPMX20_04149 0.56 -0.1
4,349,035 - MPMX20_04149 0.57 -2.3
4,349,040 - MPMX20_04149 0.57 +2.0
4,349,071 + MPMX20_04149 0.60 -2.1
4,349,079 - MPMX20_04149 0.61 +1.1
4,349,079 - MPMX20_04149 0.61 -0.3
4,349,080 + MPMX20_04149 0.61 +0.3
4,349,080 + MPMX20_04149 0.61 -2.4
4,349,114 - MPMX20_04149 0.65 -1.8
4,349,165 + MPMX20_04149 0.71 -2.1
4,349,220 + MPMX20_04149 0.76 -0.8
4,349,228 + MPMX20_04149 0.77 +1.0
4,349,228 + MPMX20_04149 0.77 +0.1
4,349,228 + MPMX20_04149 0.77 +0.2
4,349,251 + MPMX20_04149 0.80 +0.5
4,349,259 + MPMX20_04149 0.81 -2.4
4,349,262 - MPMX20_04149 0.81 -0.9
4,349,264 + MPMX20_04149 0.81 -0.6
4,349,264 + MPMX20_04149 0.81 +0.2
4,349,278 + MPMX20_04149 0.83 -0.2
4,349,278 - MPMX20_04149 0.83 +1.3
4,349,292 + MPMX20_04149 0.84 +0.0
4,349,292 + MPMX20_04149 0.84 +0.1
4,349,295 - MPMX20_04149 0.85 +0.1
4,349,303 + MPMX20_04149 0.85 +0.6
4,349,303 + MPMX20_04149 0.85 +1.6
4,349,308 + MPMX20_04149 0.86 -0.4
4,349,309 + MPMX20_04149 0.86 -2.1
4,349,309 + MPMX20_04149 0.86 -1.6
4,349,309 + MPMX20_04149 0.86 -4.0
4,349,309 + MPMX20_04149 0.86 +0.4
4,349,309 + MPMX20_04149 0.86 -1.1
4,349,309 + MPMX20_04149 0.86 -1.7
4,349,309 + MPMX20_04149 0.86 -2.1
4,349,309 + MPMX20_04149 0.86 -0.5
4,349,311 - MPMX20_04149 0.86 +0.1
4,349,311 - MPMX20_04149 0.86 +0.1
4,349,315 + MPMX20_04149 0.87 +0.3
4,349,315 + MPMX20_04149 0.87 -0.7
4,349,315 + MPMX20_04149 0.87 -0.5
4,349,315 + MPMX20_04149 0.87 -0.6
4,349,315 + MPMX20_04149 0.87 +1.0
4,349,315 + MPMX20_04149 0.87 +0.2
4,349,315 + MPMX20_04149 0.87 +3.8
4,349,315 + MPMX20_04149 0.87 -2.6
4,349,315 + MPMX20_04149 0.87 -1.0
4,349,315 + MPMX20_04149 0.87 -1.8
4,349,317 + MPMX20_04149 0.87 -0.3
4,349,317 + MPMX20_04149 0.87 -0.5
4,349,317 + MPMX20_04149 0.87 +1.7
4,349,317 + MPMX20_04149 0.87 +0.1
4,349,317 - MPMX20_04149 0.87 +0.3
4,349,318 + MPMX20_04149 0.87 +2.5
4,349,323 - MPMX20_04149 0.88 -1.0

Or see this region's nucleotide sequence