Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04110 and MPMX20_04111 are separated by 45 nucleotides MPMX20_04111 and MPMX20_04112 overlap by 4 nucleotides MPMX20_04112 and MPMX20_04113 are separated by 38 nucleotides MPMX20_04113 and MPMX20_04114 overlap by 4 nucleotides
MPMX20_04110: MPMX20_04110 - Nitrogen regulatory protein, at 4,302,679 to 4,303,170
_04110
MPMX20_04111: MPMX20_04111 - RNase adapter protein RapZ, at 4,303,216 to 4,304,070
_04111
MPMX20_04112: MPMX20_04112 - Phosphocarrier protein NPr, at 4,304,067 to 4,304,339
_04112
MPMX20_04113: MPMX20_04113 - Biosynthetic peptidoglycan transglycosylase, at 4,304,378 to 4,305,103
_04113
MPMX20_04114: MPMX20_04114 - Glyoxalase ElbB, at 4,305,100 to 4,305,756
_04114
Position (kb)
4304
4305 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4303.105 kb on + strand, within MPMX20_04110 at 4303.105 kb on + strand, within MPMX20_04110 at 4303.105 kb on + strand, within MPMX20_04110 at 4303.105 kb on + strand, within MPMX20_04110 at 4303.113 kb on - strand, within MPMX20_04110 at 4303.113 kb on - strand, within MPMX20_04110 at 4303.113 kb on - strand, within MPMX20_04110 at 4303.114 kb on + strand, within MPMX20_04110 at 4303.196 kb on + strand at 4303.267 kb on - strand at 4303.316 kb on - strand, within MPMX20_04111 at 4303.459 kb on - strand, within MPMX20_04111 at 4303.486 kb on + strand, within MPMX20_04111 at 4303.486 kb on + strand, within MPMX20_04111 at 4303.494 kb on - strand, within MPMX20_04111 at 4303.726 kb on - strand, within MPMX20_04111 at 4303.818 kb on + strand, within MPMX20_04111 at 4303.889 kb on + strand, within MPMX20_04111 at 4303.897 kb on - strand, within MPMX20_04111 at 4303.897 kb on - strand, within MPMX20_04111 at 4304.095 kb on + strand, within MPMX20_04112 at 4304.166 kb on + strand, within MPMX20_04112 at 4304.217 kb on - strand, within MPMX20_04112 at 4304.320 kb on - strand at 4304.320 kb on - strand at 4304.320 kb on - strand at 4304.355 kb on + strand at 4304.360 kb on + strand at 4304.360 kb on + strand at 4304.368 kb on - strand at 4304.368 kb on - strand at 4304.412 kb on + strand at 4304.465 kb on + strand, within MPMX20_04113 at 4304.471 kb on + strand, within MPMX20_04113 at 4304.473 kb on - strand, within MPMX20_04113 at 4304.481 kb on + strand, within MPMX20_04113 at 4304.694 kb on + strand, within MPMX20_04113 at 4304.713 kb on - strand, within MPMX20_04113 at 4304.837 kb on - strand, within MPMX20_04113 at 4304.891 kb on + strand, within MPMX20_04113 at 4304.891 kb on + strand, within MPMX20_04113 at 4304.899 kb on - strand, within MPMX20_04113 at 4304.906 kb on + strand, within MPMX20_04113 at 4304.909 kb on - strand, within MPMX20_04113 at 4304.909 kb on - strand, within MPMX20_04113 at 4304.910 kb on - strand, within MPMX20_04113 at 4305.024 kb on + strand, within MPMX20_04113 at 4305.024 kb on + strand, within MPMX20_04113 at 4305.032 kb on - strand at 4305.223 kb on + strand, within MPMX20_04114 at 4305.231 kb on - strand, within MPMX20_04114 at 4305.259 kb on - strand, within MPMX20_04114 at 4305.276 kb on - strand, within MPMX20_04114
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040 remove 4,303,105 + MPMX20_04110 0.87 -2.0 4,303,105 + MPMX20_04110 0.87 -2.4 4,303,105 + MPMX20_04110 0.87 -1.7 4,303,105 + MPMX20_04110 0.87 -0.5 4,303,113 - MPMX20_04110 0.88 -0.3 4,303,113 - MPMX20_04110 0.88 -0.3 4,303,113 - MPMX20_04110 0.88 -0.7 4,303,114 + MPMX20_04110 0.88 -2.0 4,303,196 + -2.7 4,303,267 - +1.5 4,303,316 - MPMX20_04111 0.12 -2.8 4,303,459 - MPMX20_04111 0.28 -3.3 4,303,486 + MPMX20_04111 0.32 -0.5 4,303,486 + MPMX20_04111 0.32 -0.0 4,303,494 - MPMX20_04111 0.33 -0.2 4,303,726 - MPMX20_04111 0.60 -2.6 4,303,818 + MPMX20_04111 0.70 -2.2 4,303,889 + MPMX20_04111 0.79 -2.6 4,303,897 - MPMX20_04111 0.80 -1.1 4,303,897 - MPMX20_04111 0.80 -0.1 4,304,095 + MPMX20_04112 0.10 -1.4 4,304,166 + MPMX20_04112 0.36 -1.6 4,304,217 - MPMX20_04112 0.55 -0.7 4,304,320 - -0.3 4,304,320 - -2.6 4,304,320 - -0.8 4,304,355 + -0.4 4,304,360 + +1.5 4,304,360 + -1.2 4,304,368 - +0.2 4,304,368 - +2.5 4,304,412 + -0.7 4,304,465 + MPMX20_04113 0.12 -0.1 4,304,471 + MPMX20_04113 0.13 +1.4 4,304,473 - MPMX20_04113 0.13 -1.6 4,304,481 + MPMX20_04113 0.14 -0.1 4,304,694 + MPMX20_04113 0.44 -2.0 4,304,713 - MPMX20_04113 0.46 -2.1 4,304,837 - MPMX20_04113 0.63 +1.2 4,304,891 + MPMX20_04113 0.71 +0.7 4,304,891 + MPMX20_04113 0.71 +0.8 4,304,899 - MPMX20_04113 0.72 -0.7 4,304,906 + MPMX20_04113 0.73 -0.1 4,304,909 - MPMX20_04113 0.73 -1.9 4,304,909 - MPMX20_04113 0.73 -0.8 4,304,910 - MPMX20_04113 0.73 -0.5 4,305,024 + MPMX20_04113 0.89 -2.0 4,305,024 + MPMX20_04113 0.89 +0.3 4,305,032 - -1.7 4,305,223 + MPMX20_04114 0.19 +0.4 4,305,231 - MPMX20_04114 0.20 +0.2 4,305,259 - MPMX20_04114 0.24 -0.8 4,305,276 - MPMX20_04114 0.27 -0.1
Or see this region's nucleotide sequence