Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04112

Experiment: 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04110 and MPMX20_04111 are separated by 45 nucleotidesMPMX20_04111 and MPMX20_04112 overlap by 4 nucleotidesMPMX20_04112 and MPMX20_04113 are separated by 38 nucleotidesMPMX20_04113 and MPMX20_04114 overlap by 4 nucleotides MPMX20_04110: MPMX20_04110 - Nitrogen regulatory protein, at 4,302,679 to 4,303,170 _04110 MPMX20_04111: MPMX20_04111 - RNase adapter protein RapZ, at 4,303,216 to 4,304,070 _04111 MPMX20_04112: MPMX20_04112 - Phosphocarrier protein NPr, at 4,304,067 to 4,304,339 _04112 MPMX20_04113: MPMX20_04113 - Biosynthetic peptidoglycan transglycosylase, at 4,304,378 to 4,305,103 _04113 MPMX20_04114: MPMX20_04114 - Glyoxalase ElbB, at 4,305,100 to 4,305,756 _04114 Position (kb) 4304 4305Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4303.105 kb on + strand, within MPMX20_04110at 4303.105 kb on + strand, within MPMX20_04110at 4303.105 kb on + strand, within MPMX20_04110at 4303.105 kb on + strand, within MPMX20_04110at 4303.113 kb on - strand, within MPMX20_04110at 4303.113 kb on - strand, within MPMX20_04110at 4303.113 kb on - strand, within MPMX20_04110at 4303.114 kb on + strand, within MPMX20_04110at 4303.196 kb on + strandat 4303.267 kb on - strandat 4303.316 kb on - strand, within MPMX20_04111at 4303.459 kb on - strand, within MPMX20_04111at 4303.486 kb on + strand, within MPMX20_04111at 4303.486 kb on + strand, within MPMX20_04111at 4303.494 kb on - strand, within MPMX20_04111at 4303.726 kb on - strand, within MPMX20_04111at 4303.818 kb on + strand, within MPMX20_04111at 4303.889 kb on + strand, within MPMX20_04111at 4303.897 kb on - strand, within MPMX20_04111at 4303.897 kb on - strand, within MPMX20_04111at 4304.095 kb on + strand, within MPMX20_04112at 4304.166 kb on + strand, within MPMX20_04112at 4304.217 kb on - strand, within MPMX20_04112at 4304.320 kb on - strandat 4304.320 kb on - strandat 4304.320 kb on - strandat 4304.355 kb on + strandat 4304.360 kb on + strandat 4304.360 kb on + strandat 4304.368 kb on - strandat 4304.368 kb on - strandat 4304.412 kb on + strandat 4304.465 kb on + strand, within MPMX20_04113at 4304.471 kb on + strand, within MPMX20_04113at 4304.473 kb on - strand, within MPMX20_04113at 4304.481 kb on + strand, within MPMX20_04113at 4304.694 kb on + strand, within MPMX20_04113at 4304.713 kb on - strand, within MPMX20_04113at 4304.837 kb on - strand, within MPMX20_04113at 4304.891 kb on + strand, within MPMX20_04113at 4304.891 kb on + strand, within MPMX20_04113at 4304.899 kb on - strand, within MPMX20_04113at 4304.906 kb on + strand, within MPMX20_04113at 4304.909 kb on - strand, within MPMX20_04113at 4304.909 kb on - strand, within MPMX20_04113at 4304.910 kb on - strand, within MPMX20_04113at 4305.024 kb on + strand, within MPMX20_04113at 4305.024 kb on + strand, within MPMX20_04113at 4305.032 kb on - strandat 4305.223 kb on + strand, within MPMX20_04114at 4305.231 kb on - strand, within MPMX20_04114at 4305.259 kb on - strand, within MPMX20_04114at 4305.276 kb on - strand, within MPMX20_04114

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, 1:1 coculture with Bacillus zanthoxyli TBS_040
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4,303,105 + MPMX20_04110 0.87 -2.0
4,303,105 + MPMX20_04110 0.87 -2.4
4,303,105 + MPMX20_04110 0.87 -1.7
4,303,105 + MPMX20_04110 0.87 -0.5
4,303,113 - MPMX20_04110 0.88 -0.3
4,303,113 - MPMX20_04110 0.88 -0.3
4,303,113 - MPMX20_04110 0.88 -0.7
4,303,114 + MPMX20_04110 0.88 -2.0
4,303,196 + -2.7
4,303,267 - +1.5
4,303,316 - MPMX20_04111 0.12 -2.8
4,303,459 - MPMX20_04111 0.28 -3.3
4,303,486 + MPMX20_04111 0.32 -0.5
4,303,486 + MPMX20_04111 0.32 -0.0
4,303,494 - MPMX20_04111 0.33 -0.2
4,303,726 - MPMX20_04111 0.60 -2.6
4,303,818 + MPMX20_04111 0.70 -2.2
4,303,889 + MPMX20_04111 0.79 -2.6
4,303,897 - MPMX20_04111 0.80 -1.1
4,303,897 - MPMX20_04111 0.80 -0.1
4,304,095 + MPMX20_04112 0.10 -1.4
4,304,166 + MPMX20_04112 0.36 -1.6
4,304,217 - MPMX20_04112 0.55 -0.7
4,304,320 - -0.3
4,304,320 - -2.6
4,304,320 - -0.8
4,304,355 + -0.4
4,304,360 + +1.5
4,304,360 + -1.2
4,304,368 - +0.2
4,304,368 - +2.5
4,304,412 + -0.7
4,304,465 + MPMX20_04113 0.12 -0.1
4,304,471 + MPMX20_04113 0.13 +1.4
4,304,473 - MPMX20_04113 0.13 -1.6
4,304,481 + MPMX20_04113 0.14 -0.1
4,304,694 + MPMX20_04113 0.44 -2.0
4,304,713 - MPMX20_04113 0.46 -2.1
4,304,837 - MPMX20_04113 0.63 +1.2
4,304,891 + MPMX20_04113 0.71 +0.7
4,304,891 + MPMX20_04113 0.71 +0.8
4,304,899 - MPMX20_04113 0.72 -0.7
4,304,906 + MPMX20_04113 0.73 -0.1
4,304,909 - MPMX20_04113 0.73 -1.9
4,304,909 - MPMX20_04113 0.73 -0.8
4,304,910 - MPMX20_04113 0.73 -0.5
4,305,024 + MPMX20_04113 0.89 -2.0
4,305,024 + MPMX20_04113 0.89 +0.3
4,305,032 - -1.7
4,305,223 + MPMX20_04114 0.19 +0.4
4,305,231 - MPMX20_04114 0.20 +0.2
4,305,259 - MPMX20_04114 0.24 -0.8
4,305,276 - MPMX20_04114 0.27 -0.1

Or see this region's nucleotide sequence